Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001523

Physical Location & Seq

Genomic Coordinates Forward (+)

58371405 .. 58375199

Gene Structure 3795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG384000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCCTAGATGGGATGAACTGCACATTTTGTTCAAGAATGCTGGGGCTGTTGTTATATTTGGACTAAATGCACTGCAAGGCAGGACCATAGATTCCCATGGTGCTGCTGTGGGTGATTGGAATGCGAGTAATGCTGAATCTTTTATAAGATATACAGTCAACAAAGGATACACAATTCACGGTTGGGAGCTAGGTAATGAACTATGTGGGAATGGAGTTGGAACAAGAGTCACAGCAGACCAATACGCTTCGGACATAAACTCTCTCCATAACAAGGTGCAAGATATTTATTCAGGTTCTGAATTAGCTAAGCCACTAGTCTTGGCACCAGGAGGGTTCTTTGATTCCAGTTGGTTCTCAGATTTTGTTGATAAAGCACCTCAATCTGTTCAAGTACTCACACACCACATATACAACCTTGGTCCAGGTAGTGCCCCGGATCTTGTTGACAAGATCCTCGATCCATCTGTTCTTGATGGTATTTCCAAAACCTTCAGTGACCTACAAATGCTACTTAAGAATTCAAAAACTTCAGCAGTGGGATGGGTTGGTGAATCAGGAGGTGCTTACAACAGTGGTCACAATCTTGTTACAAATGCATTTGTATTCAGTTTCTGGTACCTGGACCAGCTTGGGATGGCAGCATCTTATGATACGAAAACATATTGCAGACAAACACTCATTGGTGGAAATTATGGCCTCCTTGACATCCAAACCTTTCAACCAAATCCTGATTATTACAGCGCTCTTCTTTGGCATCGTCTAATGGGAAACAATGTCCTGTCAACAAGCTTTTCGGGGACAAAGAAACTGCGCACTTACTCTCATTGTTCCAAGAAAACACAAGGAATCACAGTGCTGCTCATCAACTTAGACGGTAACACTACAGTTCAAATCGATGTTTCAACTGAAAATGGTGGCAGCCGCAGTAGTTTGAATTTGGAACAAGGCCTCAAGGATTCTAAAGCAACCAAGAACGATGTAAGAGAAGAATACCACCTAACAGCTAAAGATGGGGACTTGCACAGCCGAGTAATGCTTCTAAATGGGAAAGAACTGACCGTAGAATCAGCAGGGCAAATCCCAAGCTTGGAGCCAATGATAGTAGGGATGTCAGATCCCACCTCTGTGGCACCTTTCTCTATTGTATTTGTTCACATTCCCAACATAACTGTCCCTGCTTGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004566 GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0016787 GO:0016798 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

396

Amino Acids

43.11

Weight (kDa)

5.82

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_79n	PF03662	1 - 212	8.8e-95	Glycosyl hydrolase family 79, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G34940 AT5G34940 AT5G34940 AT5G34940
fragaria_vesca	FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_1g02100 FvH4_2g28720 FvH4_2g28720 FvH4_2g28730
malus_domestica	MD02G1019000.v1.1 MD15G1128700.v1.1 MD15G1162800.v1.1
prunus_persica	Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.1G483900_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1 Prupe.7G252000_v2.0.a1
pyrus_communis	pycom02g01700 pycom15g11580 pycom15g14640
rosa_chinensis	RchiOBHm_Chr2g0087151 RchiOBHm_Chr6g0297501
rosa_laevigata	RLG00000011589 RLG00000015837
rosa_multiflora	Rmu_sc0003367.1_g000005 Rmu_ssc0000239.1_g000009
rosa_roxburghii	Rroxscaffold_2G00153840 Rroxscaffold_7G00170420
rosa_rugosa	Rorug01G0472900 Rorug01G0473000 Rorug06G0272700 Rorug06G0272800
rosa_samantha	Rh2AG026100 Rh2BG026000 Rh2CG026600 Rh2CG372400 Rh2DG026400 Rh6AG384000 Rh6BG103300 Rh6BG114100 Rh6BG392100 Rh6CG112400 Rh6CG398000 Rh6DG384500
rosa_wichuraiana	Rw2G002090 Rw6G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	146
Acc16I	TGCGCA	1 cut(s)	815
Acc65I	GGTACC	1 cut(s)	618
AccB1I	GGYRCC	3 cut(s)	325, 618, 1132
AciI	CCGC	1 cut(s)	925
AclWI	GGATC	4 cut(s)	447, 448, 455, 1112
AcsI	RAATTY	2 cut(s)	520, 937
AcuI	CTGAAG	2 cut(s)	478, 516
AfaI	GTAC	2 cut(s)	396, 620
AfeI	AGCGCT	1 cut(s)	745
AfiI	CCNNNNNNNGG	2 cut(s)	274, 1090
AflII	CTTAAG	1 cut(s)	515
AgsI	TTSAA	7 cut(s)	34, 392, 525, 722, 893, 906, 937
AhlI	ACTAGT	1 cut(s)	316
AjnI	CCWGG	3 cut(s)	328, 424, 621
AleI	CACNNNNGTG	1 cut(s)	1127
AluBI	AGCT	6 cut(s)	190, 308, 631, 792, 1007, 1089
AluI	AGCT	6 cut(s)	190, 308, 631, 792, 1007, 1089
AlwI	GGATC	4 cut(s)	447, 448, 455, 1112
AlwNI	CAGNNNCTG	2 cut(s)	299, 615
Aor51HI	AGCGCT	1 cut(s)	745
AoxI	GGCC	2 cut(s)	697, 949
ApeKI	GCWGC	4 cut(s)	104, 641, 859, 921
ApoI	RAATTY	2 cut(s)	520, 937
Asp718I	GGTACC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	746, 816
AspS9I	GGNCC	3 cut(s)	84, 422, 625
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	2 cut(s)	125, 563
AvaII	GGWCC	3 cut(s)	84, 422, 625
BaeGI	GKGCMC	1 cut(s)	436
BanI	GGYRCC	3 cut(s)	325, 618, 1132
BbvI	GCAGC	4 cut(s)	91, 653, 846, 933
BccI	CCATC	6 cut(s)	3, 470, 472, 537, 631, 1007
BciT130I	CCWGG	3 cut(s)	330, 426, 623
BciVI	GTATCC	1 cut(s)	161
BcnI	CCSGG	1 cut(s)	437
BcuI	ACTAGT	1 cut(s)	316
BfaI	CTAG	3 cut(s)	6, 191, 317
BfmI	CTRYAG	1 cut(s)	885
BfoI	RGCGCY	1 cut(s)	747
BfrI	CTTAAG	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	5 cut(s)	105, 642, 860, 922, 925
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	5 cut(s)	106, 643, 861, 923, 926
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	4 cut(s)	330, 426, 437, 623
Bme18I	GGWCC	3 cut(s)	84, 422, 625
BmgT120I	GGNCC	3 cut(s)	84, 422, 625
BmiI	GGNNCC	4 cut(s)	327, 620, 1095, 1134
BmrFI	CCNGG	4 cut(s)	330, 426, 437, 623
BmsI	GCATC	2 cut(s)	653, 766
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	938
BpuMI	CCSGG	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	897
BsaJI	CCNNGG	3 cut(s)	97, 418, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 1090
Bse1I	ACTGG	1 cut(s)	348
BseBI	CCWGG	3 cut(s)	330, 426, 623
BseCI	ATCGAT	1 cut(s)	897
BseDI	CCNNGG	3 cut(s)	97, 418, 435
BseGI	GGATG	5 cut(s)	19, 548, 642, 708, 1116
BseLI	CCNNNNNNNGG	2 cut(s)	274, 1090
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	4 cut(s)	91, 653, 846, 933
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	5
BshFI	GGCC	2 cut(s)	699, 951
BshNI	GGYRCC	3 cut(s)	325, 618, 1132
BshVI	ATCGAT	1 cut(s)	897
BsiSI	CCGG	1 cut(s)	437
BslFI	GGGAC	3 cut(s)	814, 1031, 1160
BslI	CCNNNNNNNGG	2 cut(s)	274, 1090
BsmFI	GGGAC	3 cut(s)	814, 1031, 1160
BsmI	GAATGC	2 cut(s)	43, 127
BsnI	GGCC	2 cut(s)	699, 951
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	439, 453, 460, 1117
Bsp1720I	GCTNAGC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	1 cut(s)	925
BspANI	GGCC	2 cut(s)	699, 951
BspCNI	CTCAG	1 cut(s)	371
BspDI	ATCGAT	1 cut(s)	897
BspLI	GGNNCC	4 cut(s)	327, 620, 1095, 1134
BspPI	GGATC	4 cut(s)	447, 448, 455, 1112
BspQI	GCTCTTC	1 cut(s)	753
BspT107I	GGYRCC	3 cut(s)	325, 618, 1132
BspTI	CTTAAG	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	97, 418, 435
BssMI	GATC	4 cut(s)	439, 453, 460, 1117
BssT1I	CCWWGG	2 cut(s)	97, 418
Bst2UI	CCWGG	3 cut(s)	330, 426, 623
Bst4CI	ACNGT	8 cut(s)	157, 182, 575, 856, 878, 889, 1063, 1174
Bst6I	CTCTTC	1 cut(s)	753
BstAFI	CTTAAG	1 cut(s)	515
BstDEI	CTNAG	3 cut(s)	309, 358, 871
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	5 cut(s)	19, 548, 642, 708, 1116
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	2 cut(s)	746, 816
BstKTI	GATC	4 cut(s)	442, 456, 463, 1120
BstMBI	GATC	4 cut(s)	439, 453, 460, 1117
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	3 cut(s)	330, 426, 623
BstSCI	CCNGG	4 cut(s)	328, 424, 435, 621
BstSFI	CTRYAG	1 cut(s)	885
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	4 cut(s)	91, 653, 846, 933
BstX2I	RGATCY	3 cut(s)	439, 453, 1117
BstXI	CCANNNNNNTGG	1 cut(s)	1129
BstYI	RGATCY	3 cut(s)	439, 453, 1117
Bsu15I	ATCGAT	1 cut(s)	897
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	699, 951
BsuTUI	ATCGAT	1 cut(s)	897
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	5 cut(s)	19, 548, 642, 708, 1116
BtsI	GCAGTG	2 cut(s)	71, 543
BtsIMutI	CAGTG	5 cut(s)	71, 502, 543, 580, 861
CaiI	CAGNNNCTG	2 cut(s)	299, 615
CfoI	GCGC	2 cut(s)	746, 816
Cfr13I	GGNCC	3 cut(s)	84, 422, 625
ClaI	ATCGAT	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	395, 619
CspCI	CAANNNNNGTGG	2 cut(s)	303, 338
CviAII	CATG	1 cut(s)	98
CviQI	GTAC	2 cut(s)	395, 619
DdeI	CTNAG	3 cut(s)	309, 358, 871
DpnI	GATC	4 cut(s)	441, 455, 462, 1119
DpnII	GATC	4 cut(s)	439, 453, 460, 1117
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Eco130I	CCWWGG	2 cut(s)	97, 418
Eco147I	AGGCCT	1 cut(s)	951
Eco47I	GGWCC	3 cut(s)	84, 422, 625
Eco47III	AGCGCT	1 cut(s)	745
Eco57I	CTGAAG	2 cut(s)	478, 516
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	3 cut(s)	328, 424, 621
EcoT14I	CCWWGG	2 cut(s)	97, 418
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	2 cut(s)	97, 418
FaeI	CATG	1 cut(s)	101
FaqI	GGGAC	3 cut(s)	814, 1031, 1160
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	105, 642, 860, 922, 925
FokI	GGATG	5 cut(s)	26, 555, 649, 695, 1123
Fsp4HI	GCNGC	5 cut(s)	105, 642, 860, 922, 925
FspBI	CTAG	3 cut(s)	6, 191, 317
FspI	TGCGCA	1 cut(s)	815
GlaI	GCGC	2 cut(s)	745, 815
GluI	GCNGC	5 cut(s)	105, 642, 860, 922, 925
GsaI	CCCAGC	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	699, 951
HapII	CCGG	1 cut(s)	437
HhaI	GCGC	2 cut(s)	746, 816
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	2 cut(s)	744, 814
HinP1I	GCGC	2 cut(s)	744, 814
HincII	GTYRAC	3 cut(s)	160, 448, 786
HindII	GTYRAC	3 cut(s)	160, 448, 786
HindIII	AAGCTT	2 cut(s)	790, 1087
HinfI	GANTC	8 cut(s)	92, 137, 228, 344, 554, 849, 959, 1067
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	2 cut(s)	125, 563
Hpy166II	GTNNAC	4 cut(s)	160, 448, 786, 1156
Hpy188I	TCNGA	4 cut(s)	253, 301, 361, 1117
Hpy188III	TCNNGA	4 cut(s)	34, 473, 558, 731
Hpy8I	GTNNAC	4 cut(s)	160, 448, 786, 1156
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	8 cut(s)	157, 182, 575, 856, 878, 889, 1063, 1174
HpyCH4V	TGCA	7 cut(s)	22, 71, 76, 280, 599, 669, 1024
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	309, 358, 871
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	2 cut(s)	744, 814
KpnI	GGTACC	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	439, 453, 460, 1117
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	2 cut(s)	187, 1093
Lsp1109I	GCAGC	4 cut(s)	91, 653, 846, 933
LweI	GCATC	2 cut(s)	653, 766
MaeI	CTAG	3 cut(s)	6, 191, 317
MaeIII	GTNAC	5 cut(s)	229, 497, 578, 589, 878
MalI	GATC	4 cut(s)	441, 455, 462, 1119
MboI	GATC	4 cut(s)	439, 453, 460, 1117
MboII	GAAGA	2 cut(s)	740, 1001
MflI	RGATCY	3 cut(s)	439, 453, 1117
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	5 cut(s)	174, 302, 520, 691, 937
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	7 cut(s)	326, 390, 467, 554, 710, 962, 1135
Mph1103I	ATGCAT	1 cut(s)	601
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	1127
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	4 cut(s)	330, 426, 437, 623
Mva1269I	GAATGC	2 cut(s)	43, 127
MvaI	CCWGG	3 cut(s)	330, 426, 623
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	437
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	4 cut(s)	439, 453, 460, 1117
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	4 cut(s)	327, 620, 1095, 1134
NmeAIII	GCCGAG	1 cut(s)	1055
NmuCI	GTSAC	3 cut(s)	229, 497, 578
NsbI	TGCGCA	1 cut(s)	815
NsiI	ATGCAT	1 cut(s)	601
OliI	CACNNNNGTG	1 cut(s)	1127
PceI	AGGCCT	1 cut(s)	951
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	2 cut(s)	43, 127
PfeI	GAWTC	7 cut(s)	92, 137, 344, 554, 849, 959, 1067
PkrI	GCNGC	5 cut(s)	106, 643, 861, 923, 926
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	146
Psp6I	CCWGG	3 cut(s)	328, 424, 621
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	328, 424, 621
PspN4I	GGNNCC	4 cut(s)	327, 620, 1095, 1134
PspPI	GGNCC	3 cut(s)	84, 422, 625
PstNI	CAGNNNCTG	2 cut(s)	299, 615
PsuI	RGATCY	3 cut(s)	439, 453, 1117
RsaI	GTAC	2 cut(s)	396, 620
RsaNI	GTAC	2 cut(s)	395, 619
RseI	CAYNNNNRTG	1 cut(s)	1127
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	5 cut(s)	105, 642, 860, 922, 925
Sau3AI	GATC	4 cut(s)	439, 453, 460, 1117
Sau96I	GGNCC	3 cut(s)	84, 422, 625
ScaI	AGTACT	1 cut(s)	396
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	4 cut(s)	330, 426, 437, 623
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	653, 766
SfcI	CTRYAG	1 cut(s)	885
SinI	GGWCC	3 cut(s)	84, 422, 625
SmiMI	CAYNNNNRTG	1 cut(s)	1127
SmlI	CTYRAG	2 cut(s)	515, 953
SmoI	CTYRAG	2 cut(s)	515, 953
SpeI	ACTAGT	1 cut(s)	316
Sse9I	AATT	5 cut(s)	174, 302, 520, 691, 937
SseBI	AGGCCT	1 cut(s)	951
SsiI	CCGC	1 cut(s)	925
SspMI	CTAG	3 cut(s)	6, 191, 317
StuI	AGGCCT	1 cut(s)	951
StyD4I	CCNGG	4 cut(s)	328, 424, 435, 621
StyI	CCWWGG	2 cut(s)	97, 418
TaaI	ACNGT	8 cut(s)	157, 182, 575, 856, 878, 889, 1063, 1174
TaqI	TCGA	2 cut(s)	459, 897
TasI	AATT	5 cut(s)	174, 302, 520, 691, 937
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	1 cut(s)	927
TfiI	GAWTC	7 cut(s)	92, 137, 344, 554, 849, 959, 1067
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	5 cut(s)	78, 502, 543, 580, 861
TseFI	GTSAC	3 cut(s)	229, 497, 578
TseI	GCWGC	4 cut(s)	104, 641, 859, 921
Tsp45I	GTSAC	3 cut(s)	229, 497, 578
TspDTI	ATGAA	2 cut(s)	30, 213
TspRI	CASTG	5 cut(s)	78, 502, 543, 580, 861
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	3 cut(s)	84, 422, 625
XapI	RAATTY	2 cut(s)	520, 937
XspI	CTAG	3 cut(s)	6, 191, 317
ZrmI	AGTACT	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.