Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Reverse (-)

17164093 .. 17166032

Gene Structure 1940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGTTAGTCAGAAAGAGACCGTGTGTGTAACCGGCGCTTCGGGTTTCATCGGTTCATGGCTAGTGATGCGATTACTAGAACGTGGTTACTTTGTTCGTGCCACCGTTCGAGATCCCGGTAATTTGAAGAAAGTACAACATCTTCTTGATTTGCCAAACGCCAAGACGCTACTCACTTTATGGAAGGCTGATTTATCTGAGGAAGGAAGCTACGATGATGCCATAAACGGATGTGACGGTGTTTTCCACGTGGCAACACCCATGGATTTTGAATCAAAAGATCCTGAGAACGAAGTGATAAAGCCGACAGTGAATGGAATGTTGGGGATAATGAAAGCATGTGTTAAGGCAAAGACCGTACGAAGATTCGTATTTACTTCATCTGCCGGAACCGTTAATGTAGAAGAACATCAGAAGAATGTCTATGATGAAAATGATTGGAGTGATCTTGAGTTTATCATGTCCAAAAAGATGACAGGATGGATGTATTTCGTGTCAAAAACGTTAGCGGAGAAAGCAGCGTGGGATTTCGCCGAAGAGAAAGGATTAGATTTCATTAGTATTATTCCAACATTGGTGGTCGGTCCATTCATCACAACGTCTATGCCGCCTAGCCTTATCACCGCGCTCTCTCCTATCACTCGGAACGAGGCGCATTACTCGATCATAAGACAAGGACAGTATGTGCATTTGGACGACTTATGCAACGCTCATATCTTCTTATACGAACAAGCAGCCGCCAAGGGACGTTATATTTGTTCCTCTCATGATGCAACCATTCTTACTATCTCCAAATTTCTCAGGCCAAAATACCCCGAATATAACGTACCTTCAACGTTTGAAGGTGTTGATGAGAATCTAAAGAGCATTGAATTCAGTTCCAAGAAGCTGACGGACATGGGGTTTAACTTCAAGTATAGTCTCGAGGAAATGTTTATTGAATCTATTGAGACATGTCGTCAAAAGGGTTTTCTCCCGGTTTCATTATCGTACCAATCCATATCGGAGATCAAGACTAAGAATGAAAACATTGACGTCAAAACCGGAGATGGTTTAACCGATGGTATGAAGCCATGTAACAAGACAGAAACGGGGATAACCGGCGAGAGAACCGATGCTCCCATGCTAGCACAACAGATGTGTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

382

Amino Acids

42.77

Weight (kDa)

5.43

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	4 - 142	3.8e-12	NmrA-like family
Epimerase	PF01370	8 - 247	4e-27	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	10 - 173	7.5e-18	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	10 - 260	7.1e-14	GDP-mannose 4,6 dehydratase
NAD_binding_4	PF07993	10 - 195	3.4e-12	Male sterility protein
NAD_binding_10	PF13460	12 - 140	6.5e-13	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1038
AccII	CGCG	1 cut(s)	626
AciI	CCGC	4 cut(s)	509, 608, 624, 738
AclI	AACGTT	2 cut(s)	503, 836
AclWI	GGATC	2 cut(s)	107, 275
AcsI	RAATTY	2 cut(s)	794, 872
AcvI	CACGTG	1 cut(s)	250
AcyI	GRCGYC	1 cut(s)	1035
AfaI	GTAC	4 cut(s)	135, 360, 828, 992
AflIII	ACRYGT	1 cut(s)	953
AgsI	TTSAA	7 cut(s)	127, 272, 834, 842, 872, 913, 941
AhdI	GACNNNNNGTC	1 cut(s)	957
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AloI	GAACNNNNNNTCC	2 cut(s)	1102, 1134
AluBI	AGCT	2 cut(s)	210, 889
AluI	AGCT	2 cut(s)	210, 889
Alw26I	GTCTC	3 cut(s)	11, 926, 944
AlwI	GGATC	2 cut(s)	107, 275
Ama87I	CYCGRG	1 cut(s)	923
AoxI	GGCC	1 cut(s)	803
ApeKI	GCWGC	2 cut(s)	518, 734
ApoI	RAATTY	2 cut(s)	794, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	738, 770
AspLEI	GCGC	3 cut(s)	38, 628, 655
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	2 cut(s)	117, 977
AsuHPI	GGTGA	1 cut(s)	613
AsuNHI	GCTAGC	1 cut(s)	1126
AvaI	CYCGRG	1 cut(s)	923
AvaII	GGWCC	1 cut(s)	584
BarI	GAAGNNNNNNTAC	2 cut(s)	126, 158
BbrPI	CACGTG	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	530, 746
BccI	CCATC	3 cut(s)	474, 1043, 1055
BcnI	CCSGG	2 cut(s)	117, 977
BcoDI	GTCTC	3 cut(s)	11, 926, 944
BfaI	CTAG	5 cut(s)	62, 77, 612, 1127, 1147
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	4 cut(s)	519, 608, 735, 738
BlsI	GCNGC	4 cut(s)	520, 609, 736, 739
Bme1390I	CCNGG	2 cut(s)	117, 977
Bme18I	GGWCC	1 cut(s)	584
BmeRI	GACNNNNNGTC	1 cut(s)	957
BmeT110I	CYCGRG	1 cut(s)	923
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	2 cut(s)	117, 977
BmsI	GCATC	4 cut(s)	57, 208, 760, 1105
BmtI	GCTAGC	1 cut(s)	1130
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	117, 977
BsaAI	YACGTR	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	1035
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	261, 741
BsaWI	WCCGGW	1 cut(s)	1043
BsaXI	ACNNNNNCTCC	2 cut(s)	1102, 1132
Bse118I	RCCGGY	2 cut(s)	32, 1100
Bse8I	GATNNNNATC	1 cut(s)	855
BseDI	CCNNGG	2 cut(s)	261, 741
BseGI	GGATG	3 cut(s)	236, 485, 489
BseJI	GATNNNNATC	1 cut(s)	855
BseMII	CTCAG	3 cut(s)	189, 276, 814
BseXI	GCAGC	2 cut(s)	530, 746
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	1 cut(s)	805
BsiHKCI	CYCGRG	1 cut(s)	923
BsiSI	CCGG	6 cut(s)	33, 117, 387, 977, 1044, 1101
BsiWI	CGTACG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	759
BsmAI	GTCTC	3 cut(s)	11, 926, 944
BsmFI	GGGAC	1 cut(s)	759
BsnI	GGCC	1 cut(s)	805
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	923
Bsp143I	GATC	5 cut(s)	112, 280, 445, 663, 1008
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	4 cut(s)	509, 608, 624, 738
BspANI	GGCC	1 cut(s)	805
BspCNI	CTCAG	3 cut(s)	190, 277, 813
BspFNI	CGCG	1 cut(s)	626
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	391
BspOI	GCTAGC	1 cut(s)	1130
BspPI	GGATC	2 cut(s)	107, 275
BspTNI	GGTCTC	1 cut(s)	11
BsrFI	RCCGGY	2 cut(s)	32, 1100
BssAI	RCCGGY	2 cut(s)	32, 1100
BssECI	CCNNGG	2 cut(s)	261, 741
BssMI	GATC	5 cut(s)	112, 280, 445, 663, 1008
BssNI	GRCGYC	1 cut(s)	1035
BssT1I	CCWWGG	2 cut(s)	261, 741
Bst4CI	ACNGT	7 cut(s)	22, 106, 239, 310, 358, 394, 681
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	1035
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	1128
BstDEI	CTNAG	4 cut(s)	198, 285, 800, 1017
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	236, 485, 489
BstFNI	CGCG	1 cut(s)	626
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	3 cut(s)	38, 628, 655
BstKTI	GATC	5 cut(s)	115, 283, 448, 666, 1011
BstMAI	GTCTC	3 cut(s)	11, 926, 944
BstMBI	GATC	5 cut(s)	112, 280, 445, 663, 1008
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 515
BstNSI	RCATGY	2 cut(s)	342, 957
BstSCI	CCNGG	2 cut(s)	115, 975
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	2 cut(s)	530, 746
BstX2I	RGATCY	2 cut(s)	112, 280
BstYI	RGATCY	2 cut(s)	112, 280
BsuRI	GGCC	1 cut(s)	805
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	236, 485, 489
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	1128
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	3 cut(s)	38, 628, 655
Cfr10I	RCCGGY	2 cut(s)	32, 1100
Cfr13I	GGNCC	1 cut(s)	584
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	4 cut(s)	134, 359, 827, 991
CspCI	CAANNNNNGTGG	2 cut(s)	558, 593
CviAII	CATG	9 cut(s)	57, 262, 339, 460, 767, 898, 954, 1074, 1123
CviJI	RGCY	9 cut(s)	61, 188, 210, 304, 615, 737, 805, 889, 1072
CviKI_1	RGCY	9 cut(s)	61, 188, 210, 304, 615, 737, 805, 889, 1072
CviQI	GTAC	4 cut(s)	134, 359, 827, 991
DdeI	CTNAG	4 cut(s)	198, 285, 800, 1017
DpnI	GATC	5 cut(s)	114, 282, 447, 665, 1010
DpnII	GATC	5 cut(s)	112, 280, 445, 663, 1008
DriI	GACNNNNNGTC	1 cut(s)	957
Eam1104I	CTCTTC	1 cut(s)	531
Eam1105I	GACNNNNNGTC	1 cut(s)	957
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	261, 741
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	584
Eco72I	CACGTG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	923
EcoRI	GAATTC	1 cut(s)	872
EcoT14I	CCWWGG	2 cut(s)	261, 741
ErhI	CCWWGG	2 cut(s)	261, 741
FaeI	CATG	9 cut(s)	60, 265, 342, 463, 770, 901, 957, 1077, 1126
FaqI	GGGAC	1 cut(s)	759
FatI	CATG	9 cut(s)	56, 261, 338, 459, 766, 897, 953, 1073, 1122
Fnu4HI	GCNGC	4 cut(s)	519, 608, 735, 738
FokI	GGATG	3 cut(s)	243, 492, 496
Fsp4HI	GCNGC	4 cut(s)	519, 608, 735, 738
FspBI	CTAG	5 cut(s)	62, 77, 612, 1127, 1147
GlaI	GCGC	3 cut(s)	37, 627, 654
GluI	GCNGC	4 cut(s)	519, 608, 735, 738
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	805
HapII	CCGG	6 cut(s)	33, 117, 387, 977, 1044, 1101
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	38, 628, 655
Hin1I	GRCGYC	1 cut(s)	1035
Hin1II	CATG	9 cut(s)	60, 265, 342, 463, 770, 901, 957, 1077, 1126
Hin6I	GCGC	3 cut(s)	36, 626, 653
HinP1I	GCGC	3 cut(s)	36, 626, 653
HinfI	GANTC	4 cut(s)	272, 366, 856, 941
HpaII	CCGG	6 cut(s)	33, 117, 387, 977, 1044, 1101
HphI	GGTGA	1 cut(s)	613
Hpy188I	TCNGA	5 cut(s)	12, 199, 414, 645, 1006
Hpy188III	TCNNGA	7 cut(s)	110, 146, 284, 449, 767, 923, 1012
HpyAV	CCTTC	4 cut(s)	178, 197, 836, 840
HpyCH4III	ACNGT	7 cut(s)	22, 106, 239, 310, 358, 394, 681
HpyCH4IV	ACGT	8 cut(s)	82, 249, 503, 599, 748, 825, 836, 1035
HpyCH4V	TGCA	3 cut(s)	688, 705, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 515
HpyF3I	CTNAG	4 cut(s)	198, 285, 800, 1017
HpySE526I	ACGT	8 cut(s)	82, 249, 503, 599, 748, 825, 836, 1035
Hsp92I	GRCGYC	1 cut(s)	1035
Hsp92II	CATG	9 cut(s)	60, 265, 342, 463, 770, 901, 957, 1077, 1126
HspAI	GCGC	3 cut(s)	36, 626, 653
Kzo9I	GATC	5 cut(s)	112, 280, 445, 663, 1008
LmnI	GCTCC	1 cut(s)	1123
LpnPI	CCDG	9 cut(s)	46, 130, 297, 400, 462, 787, 990, 1057, 1114
Lsp1109I	GCAGC	2 cut(s)	530, 746
LweI	GCATC	4 cut(s)	57, 208, 760, 1105
MaeI	CTAG	5 cut(s)	62, 77, 612, 1127, 1147
MaeII	ACGT	8 cut(s)	82, 249, 503, 599, 748, 825, 836, 1035
MaeIII	GTNAC	4 cut(s)	28, 86, 233, 1076
MalI	GATC	5 cut(s)	114, 282, 447, 665, 1010
MboI	GATC	5 cut(s)	112, 280, 445, 663, 1008
MboII	GAAGA	7 cut(s)	134, 139, 375, 416, 427, 548, 709
MflI	RGATCY	2 cut(s)	112, 280
MluCI	AATT	3 cut(s)	121, 794, 872
MmeI	TCCRAC	1 cut(s)	593
MnlI	CCTC	4 cut(s)	193, 643, 772, 919
MseI	TTAA	4 cut(s)	345, 396, 906, 1055
MspI	CCGG	6 cut(s)	33, 117, 387, 977, 1044, 1101
MspR9I	CCNGG	2 cut(s)	117, 977
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	67, 515
NciI	CCSGG	2 cut(s)	117, 977
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	5 cut(s)	112, 280, 445, 663, 1008
NheI	GCTAGC	1 cut(s)	1126
NlaIII	CATG	9 cut(s)	60, 265, 342, 463, 770, 901, 957, 1077, 1126
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	2 cut(s)	342, 957
PaeR7I	CTCGAG	1 cut(s)	923
PagI	TCATGA	1 cut(s)	766
PciI	ACATGT	1 cut(s)	953
PfeI	GAWTC	4 cut(s)	272, 366, 856, 941
Pfl23II	CGTACG	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	520, 609, 736, 739
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
Ppu21I	YACGTR	1 cut(s)	250
PscI	ACATGT	1 cut(s)	953
Psp1406I	AACGTT	2 cut(s)	503, 836
PspCI	CACGTG	1 cut(s)	250
PspLI	CGTACG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	584
PsuI	RGATCY	2 cut(s)	112, 280
RsaI	GTAC	4 cut(s)	135, 360, 828, 992
RsaNI	GTAC	4 cut(s)	134, 359, 827, 991
SaqAI	TTAA	4 cut(s)	345, 396, 906, 1055
SatI	GCNGC	4 cut(s)	519, 608, 735, 738
Sau3AI	GATC	5 cut(s)	112, 280, 445, 663, 1008
Sau96I	GGNCC	1 cut(s)	584
ScrFI	CCNGG	2 cut(s)	117, 977
SfaNI	GCATC	4 cut(s)	57, 208, 760, 1105
Sfr274I	CTCGAG	1 cut(s)	923
SinI	GGWCC	1 cut(s)	584
SlaI	CTCGAG	1 cut(s)	923
SmlI	CTYRAG	2 cut(s)	449, 923
SmoI	CTYRAG	2 cut(s)	449, 923
Sse9I	AATT	3 cut(s)	121, 794, 872
SsiI	CCGC	4 cut(s)	509, 608, 624, 738
SspMI	CTAG	5 cut(s)	62, 77, 612, 1127, 1147
StyD4I	CCNGG	2 cut(s)	115, 975
StyI	CCWWGG	2 cut(s)	261, 741
TaaI	ACNGT	7 cut(s)	22, 106, 239, 310, 358, 394, 681
TaiI	ACGT	8 cut(s)	85, 252, 506, 602, 751, 828, 839, 1038
TaqI	TCGA	3 cut(s)	109, 662, 924
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	3 cut(s)	121, 794, 872
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	2 cut(s)	610, 740
TfiI	GAWTC	4 cut(s)	272, 366, 856, 941
Tru1I	TTAA	4 cut(s)	345, 396, 906, 1055
Tru9I	TTAA	4 cut(s)	345, 396, 906, 1055
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	518, 734
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	2 cut(s)	243, 908
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	2 cut(s)	794, 872
XceI	RCATGY	2 cut(s)	342, 957
XhoI	CTCGAG	1 cut(s)	923
XspI	CTAG	5 cut(s)	62, 77, 612, 1127, 1147
ZraI	GACGTC	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.