Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Reverse (-)

61211618 .. 61212231

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG418200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCGCCGAGCCTCATTACTGGACTTTCGCCGCTCACTGGAAATGAAGGTCATTATTCGATCATAAAGCAAGGCCAATTCATTCATCTAGACGACCTCTGCCAATCTCATATATACTTGTATGAGCATCCGAAAGCAGAGGGCCGCTACATTTGTTCATCGCACGATGCTACGATTCATGAACTTGCGAAATTGCTGAAGGAAAAGTACCCCGAGTACAATGTTCCTACAACGTTCAAGGGCATTGAGGAGAACTTGCCACAGGTCCATTTTTCTTCAGAGAAATTATTGGAAACAGGGTTCGAGTTCAAATACAGCTTGGAGGACATGTTTATTGGAGCTGTTGATGCTTGTAAAGCAAAGGGTTTGCTTCCTCCTCCTACTGAAAGAGTTGAAAAGCAGGAGGTTGATGAGAGCAGTGTCGTCCGTGTCAAAGTCAGAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

148

Amino Acids

16.72

Weight (kDa)

5.62

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	3 cut(s)	5, 32, 145
AclI	AACGTT	1 cut(s)	233
AcuI	CTGAAG	2 cut(s)	218, 261
AfaI	GTAC	2 cut(s)	209, 218
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	3 cut(s)	238, 310, 395
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	318, 341
AluI	AGCT	2 cut(s)	318, 341
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	73, 142
AspS9I	GGNCC	2 cut(s)	142, 265
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	265
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	3 cut(s)	5, 32, 145
BlsI	GCNGC	3 cut(s)	6, 33, 146
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	142, 265
BmsI	GCATC	3 cut(s)	136, 157, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	25, 43
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	25, 43
BseRI	GAGGAG	2 cut(s)	263, 366
BshFI	GGCC	2 cut(s)	75, 144
BsiHKCI	CYCGRG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	75, 144
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	3 cut(s)	5, 32, 145
BspANI	GGCC	2 cut(s)	75, 144
BspHI	TCATGA	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	25, 43
BssMI	GATC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 356
BstNSI	RCATGY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	75, 144
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	36, 424
CciI	TCATGA	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	142, 265
Csp6I	GTAC	2 cut(s)	208, 217
CviAII	CATG	2 cut(s)	179, 328
CviJI	RGCY	6 cut(s)	12, 75, 144, 318, 341, 444
CviKI_1	RGCY	6 cut(s)	12, 75, 144, 318, 341, 444
CviQI	GTAC	2 cut(s)	208, 217
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	218, 261
Eco88I	CYCGRG	1 cut(s)	212
FaeI	CATG	2 cut(s)	182, 331
FaiI	YATR	7 cut(s)	65, 111, 113, 115, 123, 180, 329
FatI	CATG	2 cut(s)	178, 327
Fnu4HI	GCNGC	3 cut(s)	5, 32, 145
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	5, 32, 145
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	3 cut(s)	5, 32, 145
HaeIII	GGCC	2 cut(s)	75, 144
Hin1II	CATG	2 cut(s)	182, 331
HinfI	GANTC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	132, 280, 440
Hpy188III	TCNNGA	2 cut(s)	89, 179
HpyAV	CCTTC	2 cut(s)	41, 193
HpyCH4IV	ACGT	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 356
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	182, 331
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	338
LpnPI	CCDG	5 cut(s)	6, 24, 248, 282, 386
LweI	GCATC	3 cut(s)	136, 157, 337
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	233
MalI	GATC	1 cut(s)	62
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	1 cut(s)	60
MboII	GAAGA	1 cut(s)	267
MluCI	AATT	3 cut(s)	77, 191, 284
MnlI	CCTC	9 cut(s)	23, 107, 133, 241, 316, 384, 387, 397, 434
MwoI	GCNNNNNNNGC	2 cut(s)	347, 356
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	2 cut(s)	182, 331
NmeAIII	GCCGAG	1 cut(s)	33
NspI	RCATGY	1 cut(s)	331
PagI	TCATGA	1 cut(s)	178
PciI	ACATGT	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	6, 33, 146
PscI	ACATGT	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	142, 265
RsaI	GTAC	2 cut(s)	209, 218
RsaNI	GTAC	2 cut(s)	208, 217
SatI	GCNGC	3 cut(s)	5, 32, 145
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	142, 265
SetI	ASST	7 cut(s)	52, 99, 236, 267, 320, 343, 408
SfaNI	GCATC	3 cut(s)	136, 157, 337
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	3 cut(s)	77, 191, 284
SsiI	CCGC	3 cut(s)	5, 32, 145
SspMI	CTAG	1 cut(s)	89
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	59, 303
TasI	AATT	3 cut(s)	77, 191, 284
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	3 cut(s)	7, 34, 147
TfiI	GAWTC	1 cut(s)	175
TscAI	CASTG	2 cut(s)	43, 424
TspDTI	ATGAA	6 cut(s)	60, 70, 74, 147, 167, 195
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	2 cut(s)	43, 424
VpaK11BI	GGWCC	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.