Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Reverse (-)

56258910 .. 56259116

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG363400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGAAGAAGGTGAAGCATCTTCTGGACTTTCCGAAGGCAGCTGTGAACCTGACGCTGTGGAAGGCGGACCTGGATGTGGAAGGAAGCTTTGATGAAGCCATTAAGGGCCACGTCGTAGTGTTCCATGTGGCCAGGTCTATTTCGAGTCCGATGACTCAAAATTCATTGGCGTGGCCACATGAAACACTCCGGTTGGACTCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

68

Amino Acids

7.65

Weight (kDa)

8.14

Isoelectric Point (pI)

30.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AcoI	YGGCCR	2 cut(s)	129, 173
AcsI	RAATTY	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	69, 131
AluBI	AGCT	2 cut(s)	41, 87
AluI	AGCT	2 cut(s)	41, 87
AoxI	GGCC	3 cut(s)	106, 129, 173
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	67, 106
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	67
BalI	TGGCCA	2 cut(s)	131, 175
BbvI	GCAGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	71, 133
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	71, 133
Bme18I	GGWCC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	67, 106
BmrFI	CCNGG	2 cut(s)	71, 133
BmsI	GCATC	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	71, 133
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	3 cut(s)	108, 131, 175
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	3 cut(s)	108, 131, 175
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	3 cut(s)	108, 131, 175
Bst2UI	CCWGG	2 cut(s)	71, 133
BstF5I	GGATG	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	71, 133
BstSCI	CCNGG	2 cut(s)	69, 131
BstV1I	GCAGC	1 cut(s)	50
BsuRI	GGCC	3 cut(s)	108, 131, 175
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	67, 106
CseI	GACGC	1 cut(s)	61
CviAII	CATG	2 cut(s)	125, 179
CviJI	RGCY	6 cut(s)	41, 87, 98, 108, 131, 175
CviKI_1	RGCY	6 cut(s)	41, 87, 98, 108, 131, 175
EaeI	YGGCCR	2 cut(s)	129, 173
EciI	GGCGGA	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	69, 131
FaeI	CATG	2 cut(s)	128, 182
FaiI	YATR	2 cut(s)	126, 180
FatI	CATG	2 cut(s)	124, 178
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	108, 131, 175
HapII	CCGG	1 cut(s)	190
HgaI	GACGC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	128, 182
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	3 cut(s)	145, 154, 197
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	33, 150
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	28, 55, 74
HpyCH4IV	ACGT	1 cut(s)	111
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	128, 182
LpnPI	CCDG	7 cut(s)	8, 56, 62, 83, 118, 145, 203
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	1 cut(s)	25
MaeII	ACGT	1 cut(s)	111
MboII	GAAGA	2 cut(s)	11, 16
MlsI	TGGCCA	2 cut(s)	131, 175
MluCI	AATT	1 cut(s)	160
MluNI	TGGCCA	2 cut(s)	131, 175
MlyI	GAGTC	3 cut(s)	148, 154, 191
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	2 cut(s)	131, 175
MscI	TGGCCA	2 cut(s)	131, 175
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	169
Msp20I	TGGCCA	2 cut(s)	131, 175
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	2 cut(s)	71, 133
MvaI	CCWGG	2 cut(s)	71, 133
NlaIII	CATG	2 cut(s)	128, 182
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	3 cut(s)	148, 153, 191
PpsI	GAGTC	3 cut(s)	148, 153, 191
Psp6I	CCWGG	2 cut(s)	69, 131
PspGI	CCWGG	2 cut(s)	69, 131
PspPI	GGNCC	2 cut(s)	67, 106
PvuII	CAGCTG	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	39
Sau96I	GGNCC	2 cut(s)	67, 106
SchI	GAGTC	3 cut(s)	148, 154, 191
ScrFI	CCNGG	2 cut(s)	71, 133
SetI	ASST	7 cut(s)	12, 43, 51, 72, 89, 114, 137
SfaNI	GCATC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	69, 131
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	143, 200
TasI	AATT	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	4 cut(s)	17, 108, 153, 195
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.