Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Reverse (-)

49158426 .. 49163261

Gene Structure 4836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG361700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATTTTGAGTCCAAGGACCCTGAGAACGAAGTGATCAAACCTACCATAAATGGGCTGCTAGACATCATGAAAGCATGTCTAAAAGCAAAGACTGTTAGAAGGCTAGTGTTTACAGCTTCGGCTGGATCTGTCAGTATTGAAGAGACCAAAAAGCCGGTCTACAACGAAAGCAACTGGAGTGATGTCGAATTTTGCCGGAGAGTGAAGATGACTGGTTGGATGTATTTTGTATCCAAAACTCTAGCTGAGCAAGAGGCATGGAAGTTTGCCAAAGAAAATAACATTGATTTCATCACCATTATCCCAACTCTCGTAATCGGTCCATTTATCATGCCTGCCATGCCGCCGAGCCTCGTTGCTGGACTTTCGCCACTCATTGGAAAAGAAAGTCATTATTCGATCATAAAGCAATGCCAATTCATTCATCTAGAGGACCTCTGCCAATCTCATATATACTTGTATGAGCATCCGAAAGCAGAGGGCCGCTACATTTGTTCATCGCACGATGCTACGATTCATGAAATTGCGAAATTGCTGAGGGAAAAGTACCCCGAGTACAATGTTCCTACAACGTTCAAGGGCATTGAGGAGAACTTGCCACAGGTCCATTTTTCTTCAAAGAAATTATTGGAAACAGGGTTCGAGTTCAAATACAGCTTGGAGGACATGTTTGTAGGAGCTGTTGATACTTGTAAAGCAAAAGGTTTGCTTCCTCCTCCTAGTGAAAGAGTTGAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

247

Amino Acids

28.14

Weight (kDa)

6.19

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	6 - 161	6.1e-09	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	2 cut(s)	347, 487
AclI	AACGTT	1 cut(s)	575
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	2 cut(s)	551, 560
AfiI	CCNNNNNNNGG	2 cut(s)	54, 380
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	5 cut(s)	143, 580, 621, 652, 737
AloI	GAACNNNNNNTCC	2 cut(s)	626, 658
AluBI	AGCT	4 cut(s)	119, 248, 660, 683
AluI	AGCT	4 cut(s)	119, 248, 660, 683
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspS9I	GGNCC	5 cut(s)	19, 323, 436, 484, 607
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	554
AvaII	GGWCC	4 cut(s)	19, 323, 436, 607
BbvCI	CCTCAGC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	244
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	5 cut(s)	62, 107, 245, 431, 723
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	3 cut(s)	59, 347, 487
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	3 cut(s)	60, 348, 488
Bme18I	GGWCC	4 cut(s)	19, 323, 436, 607
BmeT110I	CYCGRG	1 cut(s)	554
BmgT120I	GGNCC	5 cut(s)	19, 323, 436, 484, 607
BmiI	GGNNCC	1 cut(s)	21
BmsI	GCATC	2 cut(s)	478, 499
BpmI	CTGGAG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	539
Bpu1102I	GCTNAGC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	15
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 380
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	182, 220
Bse3DI	GCAATG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	15
BseGI	GGATG	2 cut(s)	228, 469
BseLI	CCNNNNNNNGG	2 cut(s)	54, 380
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	3 cut(s)	15, 240, 530
BseNI	ACTGG	2 cut(s)	182, 220
BseRI	GAGGAG	2 cut(s)	605, 708
BseXI	GCAGC	1 cut(s)	45
BshFI	GGCC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	2 cut(s)	158, 199
BslI	CCNNNNNNNGG	2 cut(s)	54, 380
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	486
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	36, 128, 402
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	2 cut(s)	347, 487
BspANI	GGCC	1 cut(s)	486
BspCNI	CTCAG	3 cut(s)	16, 241, 531
BspHI	TCATGA	2 cut(s)	69, 520
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	419
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	182, 220
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	3 cut(s)	36, 128, 402
BssT1I	CCWWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	3 cut(s)	24, 249, 539
BstF5I	GGATG	2 cut(s)	228, 469
BstKTI	GATC	3 cut(s)	39, 131, 405
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	36, 128, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNSI	RCATGY	2 cut(s)	81, 673
BstV1I	GCAGC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	228, 469
Cac8I	GCNNGC	1 cut(s)	339
CciI	TCATGA	2 cut(s)	69, 520
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	5 cut(s)	19, 323, 436, 484, 607
Csp6I	GTAC	2 cut(s)	550, 559
CviAII	CATG	7 cut(s)	70, 78, 261, 334, 343, 521, 670
CviQI	GTAC	2 cut(s)	550, 559
DdeI	CTNAG	3 cut(s)	24, 249, 539
DpnI	GATC	3 cut(s)	38, 130, 404
DpnII	GATC	3 cut(s)	36, 128, 402
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	4 cut(s)	19, 323, 436, 607
Eco88I	CYCGRG	1 cut(s)	554
EcoO109I	RGGNCCY	2 cut(s)	19, 436
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	7 cut(s)	73, 81, 264, 337, 346, 524, 673
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FatI	CATG	7 cut(s)	69, 77, 260, 333, 342, 520, 669
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	59, 347, 487
FokI	GGATG	2 cut(s)	235, 456
Fsp4HI	GCNGC	3 cut(s)	59, 347, 487
FspBI	CTAG	5 cut(s)	62, 107, 245, 431, 723
GluI	GCNGC	3 cut(s)	59, 347, 487
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	2 cut(s)	158, 199
Hin1II	CATG	7 cut(s)	73, 81, 264, 337, 346, 524, 673
HinfI	GANTC	2 cut(s)	11, 517
HpaII	CCGG	2 cut(s)	158, 199
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	114, 163
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	3 cut(s)	70, 431, 521
Hpy8I	GTNNAC	2 cut(s)	114, 163
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	3 cut(s)	24, 249, 539
HpySE526I	ACGT	1 cut(s)	575
Hsp92II	CATG	7 cut(s)	73, 81, 264, 337, 346, 524, 673
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	36, 128, 402
LmnI	GCTCC	1 cut(s)	680
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	2 cut(s)	478, 499
MaeI	CTAG	5 cut(s)	62, 107, 245, 431, 723
MaeII	ACGT	1 cut(s)	575
MalI	GATC	3 cut(s)	38, 130, 404
MboI	GATC	3 cut(s)	36, 128, 402
MboII	GAAGA	3 cut(s)	155, 220, 609
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	5 cut(s)	191, 419, 525, 533, 626
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	200
MspI	CCGG	2 cut(s)	158, 199
MwoI	GCNNNNNNNGC	1 cut(s)	343
NdeII	GATC	3 cut(s)	36, 128, 402
NlaIII	CATG	7 cut(s)	73, 81, 264, 337, 346, 524, 673
NlaIV	GGNNCC	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	375
NspI	RCATGY	2 cut(s)	81, 673
PagI	TCATGA	2 cut(s)	69, 520
PciI	ACATGT	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	517
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	60, 348, 488
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	2 cut(s)	19, 436
PscI	ACATGT	1 cut(s)	669
Psp1406I	AACGTT	1 cut(s)	575
Psp5II	RGGWCCY	2 cut(s)	19, 436
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	5 cut(s)	19, 323, 436, 484, 607
PspPPI	RGGWCCY	2 cut(s)	19, 436
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	551, 560
RsaNI	GTAC	2 cut(s)	550, 559
SatI	GCNGC	3 cut(s)	59, 347, 487
Sau3AI	GATC	3 cut(s)	36, 128, 402
Sau96I	GGNCC	5 cut(s)	19, 323, 436, 484, 607
SchI	GAGTC	1 cut(s)	20
SetI	ASST	9 cut(s)	46, 121, 250, 441, 578, 609, 662, 685, 709
SfaNI	GCATC	2 cut(s)	478, 499
SinI	GGWCC	4 cut(s)	19, 323, 436, 607
Sse9I	AATT	5 cut(s)	191, 419, 525, 533, 626
SsiI	CCGC	2 cut(s)	347, 487
SspMI	CTAG	5 cut(s)	62, 107, 245, 431, 723
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	578
TaqI	TCGA	3 cut(s)	189, 401, 645
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	5 cut(s)	191, 419, 525, 533, 626
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	2 cut(s)	349, 489
TfiI	GAWTC	1 cut(s)	517
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	7 cut(s)	86, 283, 412, 416, 489, 509, 537
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	4 cut(s)	19, 323, 436, 607
XapI	RAATTY	1 cut(s)	191
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	2 cut(s)	81, 673
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	5 cut(s)	62, 107, 245, 431, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.