Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

8023572 .. 8025282

Gene Structure 1711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGGTTGGGATCAGAGTCCGGAGCCGTTTGTGTGATGGGCACCTCCGGTATCGTCGGCTCATGGCTCGTCATGAGACTTCTAGCGCGCGGCTGCACTGTCCGAGCCACCGTGCGAGACCCTGCGAACATGAAGAAGGTGAAGCATCTGCTGGACTTACCGAAGGCAGTGAGGCAACTGACGCTGTGGAAGGCGGACCTGGATGTGGAGGGAAGCTTTGATGAAGCCATTAAGGGCTGTGTTGGAGTATTTCATGTCGCCACGCCTATGGATTTCGAGTCTGAGGAAACAGAGATGTATTTTGCATCAAAAACTCTGGCTGAGCAAGCAGCATGGGAGTTTGCCAAAGAATACAACATTGACTTTTTTGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

126

Amino Acids

13.81

Weight (kDa)

4.99

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	9 - 93	3.9e-08	NmrA-like family
Epimerase	PF01370	10 - 88	2.8e-06	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	12 - 80	9.6e-06	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	14 - 92	1.7e-06	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccII	CGCG	2 cut(s)	88, 90
AccIII	TCCGGA	1 cut(s)	20
AciI	CCGC	2 cut(s)	90, 194
AclWI	GGATC	1 cut(s)	19
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	70, 111
AlwI	GGATC	1 cut(s)	19
Aor13HI	TCCGGA	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	93, 329
AspLEI	GCGC	2 cut(s)	88, 90
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	80, 341
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	70, 111
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	3 cut(s)	91, 94, 330
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	3 cut(s)	92, 95, 331
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	25, 43
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	154, 314
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	111
BsaWI	WCCGGW	2 cut(s)	20, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
BseAI	TCCGGA	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	273, 312
BsePI	GCGCGC	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	80, 341
BsgI	GTGCAG	1 cut(s)	79
Bsh1236I	CGCG	2 cut(s)	88, 90
BshNI	GGYRCC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	21, 48
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	70, 111
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	20
Bsp143I	GATC	1 cut(s)	11
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	2 cut(s)	90, 194
BspCNI	CTCAG	2 cut(s)	274, 313
BspEI	TCCGGA	1 cut(s)	20
BspFNI	CGCG	2 cut(s)	88, 90
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	25, 43
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	111
BssHII	GCGCGC	1 cut(s)	86
BssMI	GATC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	100, 112
BstC8I	GCNNGC	2 cut(s)	88, 327
BstDEI	CTNAG	2 cut(s)	282, 321
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	2 cut(s)	88, 90
BstHHI	GCGC	2 cut(s)	88, 90
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	2 cut(s)	70, 111
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 326
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	2 cut(s)	88, 90
BstV1I	GCAGC	2 cut(s)	80, 341
BstXI	CCANNNNNNTGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	96, 174
Cac8I	GCNNGC	2 cut(s)	88, 327
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	2 cut(s)	88, 90
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	1 cut(s)	190
CviAII	CATG	5 cut(s)	63, 73, 130, 254, 333
CviJI	RGCY	9 cut(s)	26, 60, 67, 93, 107, 216, 227, 237, 320
CviKI_1	RGCY	9 cut(s)	26, 60, 67, 93, 107, 216, 227, 237, 320
DdeI	CTNAG	2 cut(s)	282, 321
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EciI	GGCGGA	1 cut(s)	209
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	198
FaeI	CATG	5 cut(s)	66, 76, 133, 257, 336
FaiI	YATR	6 cut(s)	64, 74, 131, 255, 269, 334
FatI	CATG	5 cut(s)	62, 72, 129, 253, 332
Fnu4HI	GCNGC	3 cut(s)	91, 94, 330
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	91, 94, 330
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	2 cut(s)	87, 89
GluI	GCNGC	3 cut(s)	91, 94, 330
HapII	CCGG	2 cut(s)	21, 48
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	2 cut(s)	88, 90
Hin1II	CATG	5 cut(s)	66, 76, 133, 257, 336
Hin6I	GCGC	2 cut(s)	86, 88
HinP1I	GCGC	2 cut(s)	86, 88
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	2 cut(s)	17, 278
HpaII	CCGG	2 cut(s)	21, 48
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	16, 104, 283
Hpy188III	TCNNGA	2 cut(s)	21, 73
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	130, 157, 184
HpyCH4III	ACNGT	2 cut(s)	100, 112
HpyCH4V	TGCA	2 cut(s)	96, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 326
HpyF3I	CTNAG	2 cut(s)	282, 321
Hsp92II	CATG	5 cut(s)	66, 76, 133, 257, 336
HspAI	GCGC	2 cut(s)	86, 88
Kpn2I	TCCGGA	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	7 cut(s)	34, 61, 135, 137, 185, 212, 302
Lsp1109I	GCAGC	2 cut(s)	80, 341
LweI	GCATC	2 cut(s)	154, 314
MaeI	CTAG	1 cut(s)	83
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	2 cut(s)	26, 287
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	55, 165, 202, 277
MroI	TCCGGA	1 cut(s)	20
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	2 cut(s)	21, 48
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	88, 90
MwoI	GCNNNNNNNGC	2 cut(s)	181, 326
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	5 cut(s)	66, 76, 133, 257, 336
NlaIV	GGNNCC	2 cut(s)	25, 43
PagI	TCATGA	1 cut(s)	72
PauI	GCGCGC	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	92, 95, 331
PleI	GAGTC	2 cut(s)	25, 286
PpsI	GAGTC	2 cut(s)	25, 286
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	25, 43
PspPI	GGNCC	1 cut(s)	196
PteI	GCGCGC	1 cut(s)	86
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	91, 94, 330
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	2 cut(s)	26, 287
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	4 cut(s)	47, 141, 201, 218
SfaNI	GCATC	2 cut(s)	154, 314
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	2 cut(s)	90, 194
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	100, 112
TaqI	TCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	373
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	103, 174
TseI	GCWGC	2 cut(s)	93, 329
TspDTI	ATGAA	3 cut(s)	146, 237, 242
TspRI	CASTG	2 cut(s)	103, 174
VpaK11BI	GGWCC	1 cut(s)	196
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.