Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Reverse (-)

56461103 .. 56468670

Gene Structure 7568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG378000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACTTCTAGAGCGCGGCTGCACTGTCCGAGCCACCGTGCTCTCCCCGGTCCGTCAATGAGTAGTAGTATTATATATGGATATGTTAGTTTGATGGATATATATATATCATATAATGAAATAATGTTTCTAACTGTAACAGCGAACATGAAGAAGGTGAAGCATCTTCTGGACTTTCCGAAGGCAGCTGTGAACCTGACGCTGTGGAAGGCGGACCTGGATGTGGAGGGAAGCTTTGATGACGCCATTAAGGGCCACGTCGTAGTGTTCCATATGGCCAGGTCTATTTCGAGTCCGATGACTCAAAATTCATTGGCGTGGCCACATGAAACACTCCGGTCGGACTCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

8.79

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	16
AciI	CCGC	2 cut(s)	16, 212
AcoI	YGGCCR	2 cut(s)	276, 320
AcsI	RAATTY	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	216, 278
AluBI	AGCT	2 cut(s)	188, 234
AluI	AGCT	2 cut(s)	188, 234
Alw21I	GWGCWC	1 cut(s)	43
AoxI	GGCC	3 cut(s)	253, 276, 320
ApeKI	GCWGC	2 cut(s)	19, 185
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	50, 214, 253
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	50, 214
BalI	TGGCCA	2 cut(s)	278, 322
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	6, 197
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	218, 280
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	9
BisI	GCNGC	3 cut(s)	17, 20, 186
BlsI	GCNGC	3 cut(s)	18, 21, 187
Bme1390I	CCNGG	3 cut(s)	48, 218, 280
Bme18I	GGWCC	2 cut(s)	50, 214
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	50, 214, 253
BmrFI	CCNGG	3 cut(s)	48, 218, 280
BmsI	GCATC	1 cut(s)	172
BpuMI	CCSGG	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
BseBI	CCWGG	2 cut(s)	218, 280
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseXI	GCAGC	2 cut(s)	6, 197
BsgI	GTGCAG	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	255, 278, 322
BsiEI	CGRYCG	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	48, 337
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	3 cut(s)	255, 278, 322
Bsp1286I	GDGCHC	1 cut(s)	43
BspACI	CCGC	2 cut(s)	16, 212
BspANI	GGCC	3 cut(s)	255, 278, 322
BspFNI	CGCG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	218, 280
Bst4CI	ACNGT	3 cut(s)	26, 38, 136
BstACI	GRCGYC	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	16
BstMCI	CGRYCG	1 cut(s)	341
BstNI	CCWGG	2 cut(s)	218, 280
BstSCI	CCNGG	3 cut(s)	46, 216, 278
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	6, 197
BsuRI	GGCC	3 cut(s)	255, 278, 322
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	50, 214, 253
CpoI	CGGWCCG	1 cut(s)	50
CseI	GACGC	2 cut(s)	208, 251
CspI	CGGWCCG	1 cut(s)	50
CviAII	CATG	2 cut(s)	148, 326
CviJI	RGCY	7 cut(s)	19, 33, 188, 234, 255, 278, 322
CviKI_1	RGCY	7 cut(s)	19, 33, 188, 234, 255, 278, 322
EaeI	YGGCCR	2 cut(s)	276, 320
EciI	GGCGGA	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	50, 214
EcoRII	CCWGG	2 cut(s)	216, 278
FaeI	CATG	2 cut(s)	151, 329
FatI	CATG	2 cut(s)	147, 325
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	17, 20, 186
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	17, 20, 186
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	3 cut(s)	17, 20, 186
HaeIII	GGCC	3 cut(s)	255, 278, 322
HapII	CCGG	2 cut(s)	48, 337
HgaI	GACGC	2 cut(s)	208, 251
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	151, 329
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	3 cut(s)	292, 301, 344
HpaII	CCGG	2 cut(s)	48, 337
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	4 cut(s)	30, 180, 297, 343
Hpy188III	TCNNGA	2 cut(s)	9, 170
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	148, 175, 202
HpyCH4III	ACNGT	3 cut(s)	26, 38, 136
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	151, 329
HspAI	GCGC	1 cut(s)	14
LpnPI	CCDG	8 cut(s)	61, 155, 203, 209, 230, 265, 292, 350
Lsp1109I	GCAGC	2 cut(s)	6, 197
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	158, 163
MhlI	GDGCHC	1 cut(s)	43
MlsI	TGGCCA	2 cut(s)	278, 322
MluCI	AATT	1 cut(s)	307
MluNI	TGGCCA	2 cut(s)	278, 322
MlyI	GAGTC	3 cut(s)	295, 301, 338
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	1 cut(s)	220
Mox20I	TGGCCA	2 cut(s)	278, 322
MscI	TGGCCA	2 cut(s)	278, 322
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	316
Msp20I	TGGCCA	2 cut(s)	278, 322
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	48, 337
MspR9I	CCNGG	3 cut(s)	48, 218, 280
MvaI	CCWGG	2 cut(s)	218, 280
MvnI	CGCG	1 cut(s)	16
NciI	CCSGG	1 cut(s)	48
NdeI	CATATG	1 cut(s)	273
NlaIII	CATG	2 cut(s)	151, 329
PkrI	GCNGC	3 cut(s)	18, 21, 187
PleI	GAGTC	3 cut(s)	295, 300, 338
PpsI	GAGTC	3 cut(s)	295, 300, 338
Psp6I	CCWGG	2 cut(s)	216, 278
PspGI	CCWGG	2 cut(s)	216, 278
PspPI	GGNCC	3 cut(s)	50, 214, 253
PvuII	CAGCTG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	316
Rsr2I	CGGWCCG	1 cut(s)	50
RsrII	CGGWCCG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	3 cut(s)	17, 20, 186
Sau96I	GGNCC	3 cut(s)	50, 214, 253
SchI	GAGTC	3 cut(s)	295, 301, 338
ScrFI	CCNGG	3 cut(s)	48, 218, 280
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	7 cut(s)	159, 190, 198, 219, 236, 261, 284
SfaNI	GCATC	1 cut(s)	172
SinI	GGWCC	2 cut(s)	50, 214
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	2 cut(s)	16, 212
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	46, 216, 278
TaaI	ACNGT	3 cut(s)	26, 38, 136
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	290, 347
TasI	AATT	1 cut(s)	307
TauI	GCSGC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	29
TseI	GCWGC	2 cut(s)	19, 185
TspDTI	ATGAA	4 cut(s)	132, 164, 300, 342
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	50, 214
XapI	RAATTY	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	8
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.