Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

28368322 .. 28375279

Gene Structure 6958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39520.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGATCGGAGTCCGAATCCGTTTGTGTCACCGGAGCCTCCGGTTTCGTCGGATCATGGCTGGTCATGAGACTCCTAGAGCGTGGCTACACTGTCCGAGCCACCGTGCGAGACCCTACTAATGCGAAGAAGGTGAAGCATCTGCTAGACTTGCCGAAGGCGGCGACTCACTTGACGCTGTGGAAGGCGGACCTGGCGGACGAGGGCAGCTTCGACGAAGCCATTAAGGGATGCACCGGTGTGTTCCATGTCGCCACACCTATGGATTTTGAGTCCAAGGACCCTGAGAATGAAGTGATAAAGCCAACAATAAACGGGGTGTTAGACATCATGAAAGCATGTCTGAAAGCAAAGACTGTGAGAAGGTTGGTGTTTACAGCTTCTGCTGGATCTGTAAATGTTGAAGAGACCCAAAAGCCGGTCTACAACGAAAGCAACTGGAGCGATGTCGAATTTTGCCGGAGAGTAAAGATGACTGGTTGGATGTATTTTGTATCAAAAACTCTGGCTGAGCAAGAGGCATGGAAGTTTGCAAAAGAAAACAACATTGATTTCATTACCATTATACCAACTCTGGTCATCGGTCCATTTCTCATGCCGGCTATGCCGCCGAGTCTCATTACCGGACTTTCGCCTCTATTTGGAAATGAAGGTCATTATTCGATCATAAAGCAAGGCCAGTTTGTGCATCTAGACGACCTCTGCCAGTCTCATATATACTTGTACGAGCATCCGAAAGCAGAGGGTCGCTACATTTGTTCATCGCACGATGCTACGATTCATGAAATTGGAAAATTGCTAAGAGAAAAGTATCCGGAATACAATGTTCCTACAAAGTTCAAGGGCATTGAAGATAACTTGACAAAGGTCCATTTTTCTTCAAAGAAATTGTTGGAAACAGGGTTTGAGTTCAAGTACAGCTTGGAGGACATGTTTGTAGGGGCAGTCGATGCTTGTAAAGCAAAGGGTTTGCTTCCACCTCCTACTGAAAGAGTTGAGAAGCAGGAGAATGGCGATAGCAGTGTCGTCCATGTCGAAGTCACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

350

Amino Acids

38.96

Weight (kDa)

6.03

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	6 - 136	8.3e-11	NmrA-like family
Epimerase	PF01370	8 - 248	9.3e-26	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	10 - 176	8e-17	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	10 - 200	6.9e-11	Male sterility protein
GDP_Man_Dehyd	PF16363	10 - 270	1.7e-11	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	12 - 136	8.7e-12	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	814
AciI	CCGC	4 cut(s)	161, 188, 197, 608
AclWI	GGATC	3 cut(s)	13, 61, 397
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	2 cut(s)	725, 917
AfiI	CCNNNNNNNGG	2 cut(s)	418, 641
AflIII	ACRYGT	1 cut(s)	930
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	5 cut(s)	404, 841, 851, 882, 913
AjnI	CCWGG	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	3 cut(s)	210, 380, 921
AluI	AGCT	3 cut(s)	210, 380, 921
Alw26I	GTCTC	5 cut(s)	64, 105, 401, 620, 714
AlwI	GGATC	3 cut(s)	13, 61, 397
AlwNI	CAGNNNCTG	1 cut(s)	383
Aor13HI	TCCGGA	1 cut(s)	814
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	452
AsiGI	ACCGGT	1 cut(s)	236
AspS9I	GGNCC	4 cut(s)	190, 280, 584, 868
AsuHPI	GGTGA	2 cut(s)	22, 145
AvaII	GGWCC	4 cut(s)	190, 280, 584, 868
BbvI	GCAGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	822
BcoDI	GTCTC	5 cut(s)	64, 105, 401, 620, 714
BfaI	CTAG	3 cut(s)	77, 146, 692
BfuI	GTATCC	1 cut(s)	822
BisI	GCNGC	3 cut(s)	162, 208, 608
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	3 cut(s)	163, 209, 609
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	4 cut(s)	190, 280, 584, 868
BmgT120I	GGNCC	4 cut(s)	190, 280, 584, 868
BmiI	GGNNCC	2 cut(s)	37, 282
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	6 cut(s)	148, 221, 697, 739, 760, 940
BoxI	GACNNNNGTC	1 cut(s)	866
BpmI	CTGGAG	1 cut(s)	460
Bpu1102I	GCTNAGC	1 cut(s)	510
BsaI	GGTCTC	2 cut(s)	105, 401
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	5 cut(s)	32, 41, 236, 623, 814
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 641
Bse118I	RCCGGY	3 cut(s)	236, 418, 598
Bse1I	ACTGG	5 cut(s)	443, 481, 679, 706, 1048
BseAI	TCCGGA	1 cut(s)	814
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	3 cut(s)	236, 489, 730
BseLI	CCNNNNNNNGG	2 cut(s)	418, 641
BseMII	CTCAG	2 cut(s)	276, 501
BseNI	ACTGG	5 cut(s)	443, 481, 679, 706, 1048
BseXI	GCAGC	1 cut(s)	219
BshFI	GGCC	1 cut(s)	678
BshTI	ACCGGT	1 cut(s)	236
BsiSI	CCGG	8 cut(s)	33, 42, 237, 419, 460, 599, 624, 815
BslI	CCNNNNNNNGG	2 cut(s)	418, 641
BsmAI	GTCTC	5 cut(s)	64, 105, 401, 620, 714
BsnI	GGCC	1 cut(s)	678
Bso31I	GGTCTC	2 cut(s)	105, 401
Bsp13I	TCCGGA	1 cut(s)	814
Bsp143I	GATC	4 cut(s)	5, 53, 389, 663
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	4 cut(s)	161, 188, 197, 608
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	2 cut(s)	277, 502
BspEI	TCCGGA	1 cut(s)	814
BspHI	TCATGA	3 cut(s)	66, 330, 781
BspLI	GGNNCC	2 cut(s)	37, 282
BspPI	GGATC	3 cut(s)	13, 61, 397
BspTNI	GGTCTC	2 cut(s)	105, 401
BsrFI	RCCGGY	3 cut(s)	236, 418, 598
BsrI	ACTGG	5 cut(s)	443, 481, 679, 706, 1048
BssAI	RCCGGY	3 cut(s)	236, 418, 598
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	4 cut(s)	5, 53, 389, 663
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	94, 106, 358
Bst6I	CTCTTC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	950
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	285, 510, 800
BstF5I	GGATG	3 cut(s)	236, 489, 730
BstKTI	GATC	4 cut(s)	8, 56, 392, 666
BstMAI	GTCTC	5 cut(s)	64, 105, 401, 620, 714
BstMBI	GATC	4 cut(s)	5, 53, 389, 663
BstMWI	GCNNNNNNNGC	6 cut(s)	151, 194, 441, 604, 950, 959
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	2 cut(s)	342, 934
BstPAI	GACNNNNGTC	1 cut(s)	866
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	822
BsuRI	GGCC	1 cut(s)	678
BtgZI	GCGATG	2 cut(s)	459, 747
BtsCI	GGATG	3 cut(s)	236, 489, 730
BtsI	GCAGTG	1 cut(s)	1027
BtsIMutI	CAGTG	3 cut(s)	90, 1027, 1041
Cac8I	GCNNGC	1 cut(s)	600
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	3 cut(s)	66, 330, 781
Cfr10I	RCCGGY	3 cut(s)	236, 418, 598
Cfr13I	GGNCC	4 cut(s)	190, 280, 584, 868
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	724, 916
CspAI	ACCGGT	1 cut(s)	236
CviQI	GTAC	2 cut(s)	724, 916
DdeI	CTNAG	3 cut(s)	285, 510, 800
DpnI	GATC	4 cut(s)	7, 55, 391, 665
DpnII	GATC	4 cut(s)	5, 53, 389, 663
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	2 cut(s)	203, 212
Eco130I	CCWWGG	1 cut(s)	276
Eco31I	GGTCTC	2 cut(s)	105, 401
Eco47I	GGWCC	4 cut(s)	190, 280, 584, 868
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FalI	AAGNNNNNCTT	2 cut(s)	905, 937
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	162, 208, 608
FokI	GGATG	3 cut(s)	243, 496, 717
Fsp4HI	GCNGC	3 cut(s)	162, 208, 608
FspBI	CTAG	3 cut(s)	77, 146, 692
GluI	GCNGC	3 cut(s)	162, 208, 608
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	8 cut(s)	33, 42, 237, 419, 460, 599, 624, 815
HgaI	GACGC	1 cut(s)	184
HinfI	GANTC	7 cut(s)	11, 17, 72, 166, 272, 613, 778
HpaII	CCGG	8 cut(s)	33, 42, 237, 419, 460, 599, 624, 815
HphI	GGTGA	2 cut(s)	22, 145
Hpy166II	GTNNAC	2 cut(s)	375, 424
Hpy188I	TCNGA	6 cut(s)	10, 16, 53, 98, 345, 735
Hpy188III	TCNNGA	5 cut(s)	67, 331, 692, 782, 815
Hpy8I	GTNNAC	2 cut(s)	375, 424
Hpy99I	CGWCG	2 cut(s)	53, 218
HpyAV	CCTTC	5 cut(s)	124, 151, 178, 357, 644
HpyCH4III	ACNGT	3 cut(s)	94, 106, 358
HpyCH4V	TGCA	3 cut(s)	234, 533, 688
HpyF10VI	GCNNNNNNNGC	6 cut(s)	151, 194, 441, 604, 950, 959
HpyF3I	CTNAG	3 cut(s)	285, 510, 800
Kpn2I	TCCGGA	1 cut(s)	814
KroI	GCCGGC	1 cut(s)	598
KroNI	GCCGGC	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	5, 53, 389, 663
LmnI	GCTCC	2 cut(s)	35, 441
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	6 cut(s)	148, 221, 697, 739, 760, 940
MaeI	CTAG	3 cut(s)	77, 146, 692
MaeIII	GTNAC	2 cut(s)	28, 1039
MalI	GATC	4 cut(s)	7, 55, 391, 665
MboI	GATC	4 cut(s)	5, 53, 389, 663
MboII	GAAGA	4 cut(s)	139, 416, 863, 870
MflI	RGATCY	1 cut(s)	389
MluCI	AATT	4 cut(s)	452, 786, 794, 887
MlyI	GAGTC	5 cut(s)	20, 66, 160, 281, 622
MmeI	TCCRAC	3 cut(s)	31, 461, 873
MnlI	CCTC	8 cut(s)	49, 196, 511, 645, 710, 736, 919, 990
MroI	TCCGGA	1 cut(s)	814
MroNI	GCCGGC	1 cut(s)	598
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	2 cut(s)	239, 260
MspI	CCGG	8 cut(s)	33, 42, 237, 419, 460, 599, 624, 815
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	6 cut(s)	151, 194, 441, 604, 950, 959
NaeI	GCCGGC	1 cut(s)	600
NdeII	GATC	4 cut(s)	5, 53, 389, 663
NgoMIV	GCCGGC	1 cut(s)	598
NlaIV	GGNNCC	2 cut(s)	37, 282
NmeAIII	GCCGAG	1 cut(s)	636
NmuCI	GTSAC	2 cut(s)	28, 1039
NspI	RCATGY	2 cut(s)	342, 934
OliI	CACNNNNGTG	1 cut(s)	239
PagI	TCATGA	3 cut(s)	66, 330, 781
PciI	ACATGT	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	1 cut(s)	1032
PdiI	GCCGGC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	17, 778
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	163, 209, 609
PleI	GAGTC	5 cut(s)	19, 66, 160, 280, 621
PpsI	GAGTC	5 cut(s)	19, 66, 160, 280, 621
PpuMI	RGGWCCY	1 cut(s)	280
PscI	ACATGT	1 cut(s)	930
PshAI	GACNNNNGTC	1 cut(s)	866
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	37, 282
PspPI	GGNCC	4 cut(s)	190, 280, 584, 868
PspPPI	RGGWCCY	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	2 cut(s)	725, 917
RsaNI	GTAC	2 cut(s)	724, 916
RseI	CAYNNNNRTG	2 cut(s)	239, 260
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	3 cut(s)	162, 208, 608
Sau3AI	GATC	4 cut(s)	5, 53, 389, 663
Sau96I	GGNCC	4 cut(s)	190, 280, 584, 868
SchI	GAGTC	5 cut(s)	20, 66, 160, 281, 622
ScrFI	CCNGG	1 cut(s)	194
SfaNI	GCATC	6 cut(s)	148, 221, 697, 739, 760, 940
SgrAI	CRCCGGYG	1 cut(s)	236
SinI	GGWCC	4 cut(s)	190, 280, 584, 868
SmiMI	CAYNNNNRTG	2 cut(s)	239, 260
Sse9I	AATT	4 cut(s)	452, 786, 794, 887
SsiI	CCGC	4 cut(s)	161, 188, 197, 608
SspMI	CTAG	3 cut(s)	77, 146, 692
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	94, 106, 358
TaqI	TCGA	5 cut(s)	213, 450, 662, 948, 1035
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	4 cut(s)	452, 786, 794, 887
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	2 cut(s)	164, 610
TfiI	GAWTC	2 cut(s)	17, 778
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	3 cut(s)	97, 1027, 1048
TseFI	GTSAC	2 cut(s)	28, 1039
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	2 cut(s)	28, 1039
TspDTI	ATGAA	7 cut(s)	306, 347, 544, 663, 750, 770, 798
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	3 cut(s)	97, 1027, 1048
VpaK11BI	GGWCC	4 cut(s)	190, 280, 584, 868
XapI	RAATTY	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	691
XceI	RCATGY	2 cut(s)	342, 934
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	3 cut(s)	77, 146, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.