Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

2064394 .. 2066020

Gene Structure 1627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1028400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTTCTATTGTTAATCTCATTAACCTATGGGCAGTGTGTTCACTTGGATGACCTCCGCCTTTCTCACATCTATTTGTACGAGCATCTGAAAGCTGAGGGCCGCTACATTTGTTTGTCACATGATGCAACAATTCACGACCTTGTAAAAATGCTTGGAGAAAAATATATACCCCGCGTACAATATTTCCATAAAGGCATTGACGACAACTTAGATACTATTCATTTTTCTTCAAAGAAGTTGAGGGACATAGGGTTTGAGTTCAAGTACAGCTTGGAGGACATGTTTATGGCTGTTGATACGTGCCAGGCAAAGGGCTTGATTCCGATTCCGGCCGAGAAAACTGAGGCTGCTGATGAAAGCAACGTCGTCAACGTCAAAATTTCCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

131

Amino Acids

14.86

Weight (kDa)

5.74

Isoelectric Point (pI)

15.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	177
AciI	CCGC	3 cut(s)	58, 103, 175
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	381
AfaI	GTAC	3 cut(s)	80, 180, 269
AfiI	CCNNNNNNNGG	1 cut(s)	313
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	234, 265
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	2 cut(s)	95, 273
AluI	AGCT	2 cut(s)	95, 273
AoxI	GGCC	2 cut(s)	100, 333
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	381
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	103, 351
BlsI	GCNGC	2 cut(s)	104, 352
Bme1390I	CCNGG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	94, 115
Bpu10I	CCTNAGC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	2 cut(s)	87, 336
BseX3I	CGGCCG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	102, 335
BsiEI	CGRYCG	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	332, 387
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	102, 335
BspACI	CCGC	3 cut(s)	58, 103, 175
BspANI	GGCC	2 cut(s)	102, 335
BspCNI	CTCAG	2 cut(s)	88, 337
BspFNI	CGCG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	96, 211, 345
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	177
BstMCI	CGRYCG	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	337
BstZI	CGGCCG	1 cut(s)	333
BsuRI	GGCC	2 cut(s)	102, 335
BtsCI	GGATG	1 cut(s)	55
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	79, 179, 268
CviAII	CATG	2 cut(s)	122, 283
CviJI	RGCY	7 cut(s)	95, 102, 273, 293, 318, 335, 350
CviKI_1	RGCY	7 cut(s)	95, 102, 273, 293, 318, 335, 350
CviQI	GTAC	3 cut(s)	79, 179, 268
DdeI	CTNAG	3 cut(s)	96, 211, 345
EaeI	YGGCCR	1 cut(s)	333
EagI	CGGCCG	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	47
EclXI	CGGCCG	1 cut(s)	333
Eco52I	CGGCCG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	125, 286
FaiI	YATR	8 cut(s)	30, 123, 168, 170, 192, 251, 284, 290
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	121, 282
FauI	CCCGC	1 cut(s)	182
Fnu4HI	GCNGC	2 cut(s)	103, 351
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	103, 351
GluI	GCNGC	2 cut(s)	103, 351
HaeIII	GGCC	2 cut(s)	102, 335
HapII	CCGG	2 cut(s)	332, 387
Hin1II	CATG	2 cut(s)	125, 286
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	2 cut(s)	322, 328
HpaII	CCGG	2 cut(s)	332, 387
Hpy166II	GTNNAC	2 cut(s)	43, 373
Hpy188I	TCNGA	2 cut(s)	90, 327
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	2 cut(s)	43, 373
Hpy99I	CGWCG	1 cut(s)	371
HpyCH4IV	ACGT	3 cut(s)	302, 366, 375
HpyCH4V	TGCA	1 cut(s)	128
HpyF3I	CTNAG	3 cut(s)	96, 211, 345
HpySE526I	ACGT	3 cut(s)	302, 366, 375
Hsp92II	CATG	2 cut(s)	125, 286
LpnPI	CCDG	3 cut(s)	293, 320, 345
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	94, 115
MaeII	ACGT	3 cut(s)	302, 366, 375
MaeIII	GTNAC	1 cut(s)	117
MboII	GAAGA	1 cut(s)	222
MluCI	AATT	2 cut(s)	132, 381
MnlI	CCTC	5 cut(s)	65, 91, 237, 271, 340
MseI	TTAA	3 cut(s)	14, 23, 391
MslI	CAYNNNNRTG	2 cut(s)	48, 287
MspI	CCGG	2 cut(s)	332, 387
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	177
NlaIII	CATG	2 cut(s)	125, 286
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	286
PciI	ACATGT	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	322, 328
PkrI	GCNGC	2 cut(s)	104, 352
Ppu21I	YACGTR	1 cut(s)	303
PscI	ACATGT	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	3 cut(s)	80, 180, 269
RsaNI	GTAC	3 cut(s)	79, 179, 268
RseI	CAYNNNNRTG	2 cut(s)	48, 287
SaqAI	TTAA	3 cut(s)	14, 23, 391
SatI	GCNGC	2 cut(s)	103, 351
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	8 cut(s)	29, 57, 97, 144, 275, 305, 369, 378
SfaNI	GCATC	2 cut(s)	94, 115
SmiMI	CAYNNNNRTG	2 cut(s)	48, 287
Sse9I	AATT	2 cut(s)	132, 381
SsiI	CCGC	3 cut(s)	58, 103, 175
SspI	AATATT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	306
TaiI	ACGT	3 cut(s)	305, 369, 378
TasI	AATT	2 cut(s)	132, 381
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	322, 328
Tru1I	TTAA	3 cut(s)	14, 23, 391
Tru9I	TTAA	3 cut(s)	14, 23, 391
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	212, 372
TspRI	CASTG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	381
XceI	RCATGY	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.