Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

1227711 .. 1229380

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGATCCGAGTCCGAATCCGTTTGTGTCACCGGCGCGTCCGGTTTCATCGGCTCTTGGCTCGTCATGAGACTCCTAGAGCACGGGTACACCGTCCGCGCCACCGTACGTGACCCCACGAATCAGAAGAAGGTGAAGCATCTGTTGGACTTGCCGAAGGCGGAGACGCACCTGACACTGTGGAAGGCGGACTTGGCGGATGAGGGAAGCTTTGATGAAGCCATACAAGGCTGCAGCGGAGTGTTCCATGTTGCTACACCTATGGACTTTGAATCGAAGGACCCCGAGAATGAAGTGATCAAGCCAACAATCAATGGACTGTTGGACATCCTGAAGGCATGCCAGAAAGCAAAAACAGTTCGAAAGCTTGTGTTCACATCCTCAGCAGGAACTGTGAATGTGGAGGAGCACCAAAAGCCGGTCTACGACGAGTCCAACTGGAGTGACGTTGAATTTTGCCGCTCTGTCAAGATGACTGGTTGGGTACTTCGTCTCCAAGACTCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

170

Amino Acids

18.74

Weight (kDa)

5.53

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	2 cut(s)	38, 99
AciI	CCGC	6 cut(s)	97, 161, 188, 197, 237, 460
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	353
AfaI	GTAC	3 cut(s)	89, 108, 486
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	272, 452
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 176, 208
AluBI	AGCT	3 cut(s)	210, 367, 507
AluI	AGCT	3 cut(s)	210, 367, 507
Alw21I	GWGCWC	2 cut(s)	84, 411
Alw26I	GTCTC	3 cut(s)	64, 158, 497
AlwI	GGATC	1 cut(s)	13
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	231, 234
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	38, 101
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	22, 145
AsuII	TTCGAA	1 cut(s)	361
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	280
BamHI	GGATCC	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	84, 411
BbvCI	CCTCAGC	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	218, 246
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	64, 158, 497
BfaI	CTAG	2 cut(s)	77, 504
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	3 cut(s)	232, 235, 460
BlsI	GCNGC	3 cut(s)	233, 236, 461
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	7, 282
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	382
Bpu14I	TTCGAA	1 cut(s)	361
BsaAI	YACGTR	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	2 cut(s)	32, 418
Bse1I	ACTGG	2 cut(s)	443, 481
BseGI	GGATG	3 cut(s)	205, 327, 377
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	443, 481
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	218, 246
Bsh1236I	CGCG	2 cut(s)	38, 99
BsiHKAI	GWGCWC	2 cut(s)	84, 411
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	3 cut(s)	33, 42, 419
BsiWI	CGTACG	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	3 cut(s)	64, 158, 497
BsmBI	CGTCTC	2 cut(s)	158, 497
BsoBI	CYCGRG	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	84, 411
Bsp143I	GATC	2 cut(s)	5, 297
BspACI	CCGC	6 cut(s)	97, 161, 188, 197, 237, 460
BspCNI	CTCAG	1 cut(s)	395
BspFNI	CGCG	2 cut(s)	38, 99
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	7, 282
BspMAI	CTGCAG	1 cut(s)	236
BspPI	GGATC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	462
BsrFI	RCCGGY	2 cut(s)	32, 418
BsrI	ACTGG	2 cut(s)	443, 481
BssAI	RCCGGY	2 cut(s)	32, 418
BssMI	GATC	2 cut(s)	5, 297
Bst4CI	ACNGT	6 cut(s)	94, 106, 180, 321, 358, 394
BstBAI	YACGTR	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	382
BstF5I	GGATG	3 cut(s)	205, 327, 377
BstFNI	CGCG	2 cut(s)	38, 99
BstHHI	GCGC	2 cut(s)	38, 101
BstKTI	GATC	2 cut(s)	8, 300
BstMAI	GTCTC	3 cut(s)	64, 158, 497
BstMBI	GATC	2 cut(s)	5, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 415
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	232
BstUI	CGCG	2 cut(s)	38, 99
BstV1I	GCAGC	2 cut(s)	218, 246
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BtsCI	GGATG	3 cut(s)	205, 327, 377
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	2 cut(s)	38, 101
Cfr10I	RCCGGY	2 cut(s)	32, 418
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	2 cut(s)	27, 175
Csp6I	GTAC	3 cut(s)	88, 107, 485
CviAII	CATG	3 cut(s)	67, 248, 339
CviJI	RGCY	9 cut(s)	54, 61, 210, 221, 231, 304, 367, 418, 507
CviKI_1	RGCY	9 cut(s)	54, 61, 210, 221, 231, 304, 367, 418, 507
CviQI	GTAC	3 cut(s)	88, 107, 485
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	2 cut(s)	7, 299
DpnII	GATC	2 cut(s)	5, 297
EciI	GGCGGA	3 cut(s)	176, 203, 212
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	280
Esp3I	CGTCTC	2 cut(s)	158, 497
FaeI	CATG	3 cut(s)	70, 251, 342
FaiI	YATR	5 cut(s)	68, 224, 249, 263, 340
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	3 cut(s)	66, 247, 338
FbaI	TGATCA	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	232, 235, 460
FokI	GGATG	3 cut(s)	212, 314, 364
Fsp4HI	GCNGC	3 cut(s)	232, 235, 460
FspBI	CTAG	2 cut(s)	77, 504
GlaI	GCGC	2 cut(s)	37, 100
GluI	GCNGC	3 cut(s)	232, 235, 460
GsuI	CTGGAG	1 cut(s)	460
HapII	CCGG	3 cut(s)	33, 42, 419
HgaI	GACGC	2 cut(s)	27, 175
HhaI	GCGC	2 cut(s)	38, 101
Hin1II	CATG	3 cut(s)	70, 251, 342
Hin6I	GCGC	2 cut(s)	36, 99
HinP1I	GCGC	2 cut(s)	36, 99
HindIII	AAGCTT	2 cut(s)	208, 365
HinfI	GANTC	7 cut(s)	11, 17, 72, 121, 272, 431, 500
HpaII	CCGG	3 cut(s)	33, 42, 419
HphI	GGTGA	2 cut(s)	22, 145
Hpy166II	GTNNAC	3 cut(s)	90, 375, 424
Hpy188I	TCNGA	3 cut(s)	10, 16, 126
Hpy188III	TCNNGA	3 cut(s)	67, 331, 469
Hpy8I	GTNNAC	3 cut(s)	90, 375, 424
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	5 cut(s)	124, 151, 178, 271, 328
HpyCH4III	ACNGT	6 cut(s)	94, 106, 180, 321, 358, 394
HpyCH4IV	ACGT	2 cut(s)	109, 447
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 415
HpyF3I	CTNAG	1 cut(s)	382
HpySE526I	ACGT	2 cut(s)	109, 447
Hsp92II	CATG	3 cut(s)	70, 251, 342
HspAI	GCGC	2 cut(s)	36, 99
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	5, 297
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	9 cut(s)	46, 55, 185, 344, 356, 372, 424, 432, 462
Lsp1109I	GCAGC	2 cut(s)	218, 246
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	77, 504
MaeII	ACGT	2 cut(s)	109, 447
MaeIII	GTNAC	3 cut(s)	28, 110, 443
MalI	GATC	2 cut(s)	7, 299
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	2 cut(s)	5, 297
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	2 cut(s)	84, 411
MluCI	AATT	1 cut(s)	452
MlyI	GAGTC	4 cut(s)	20, 66, 440, 494
MmeI	TCCRAC	3 cut(s)	126, 303, 459
MnlI	CCTC	3 cut(s)	196, 391, 397
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	3 cut(s)	33, 42, 419
MvnI	CGCG	2 cut(s)	38, 99
MwoI	GCNNNNNNNGC	2 cut(s)	194, 415
NdeII	GATC	2 cut(s)	5, 297
NlaIII	CATG	3 cut(s)	70, 251, 342
NlaIV	GGNNCC	2 cut(s)	7, 282
NmuCI	GTSAC	3 cut(s)	28, 110, 443
NspI	RCATGY	1 cut(s)	342
NspV	TTCGAA	1 cut(s)	361
PaeI	GCATGC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	17, 121, 272
Pfl23II	CGTACG	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	233, 236, 461
PleI	GAGTC	4 cut(s)	19, 66, 439, 494
PpsI	GAGTC	4 cut(s)	19, 66, 439, 494
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
PspLI	CGTACG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	7, 282
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	236
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	3 cut(s)	89, 108, 486
RsaNI	GTAC	3 cut(s)	88, 107, 485
SatI	GCNGC	3 cut(s)	232, 235, 460
Sau3AI	GATC	2 cut(s)	5, 297
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	4 cut(s)	20, 66, 440, 494
SduI	GDGCHC	2 cut(s)	84, 411
SetI	ASST	8 cut(s)	112, 135, 174, 212, 262, 369, 450, 509
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	361
SgrAI	CRCCGGYG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	280
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	6 cut(s)	97, 161, 188, 197, 237, 460
SspMI	CTAG	2 cut(s)	77, 504
TaaI	ACNGT	6 cut(s)	94, 106, 180, 321, 358, 394
TaiI	ACGT	2 cut(s)	112, 450
TaqI	TCGA	2 cut(s)	275, 361
TasI	AATT	1 cut(s)	452
TauI	GCSGC	1 cut(s)	462
TfiI	GAWTC	3 cut(s)	17, 121, 272
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	3 cut(s)	28, 110, 443
TseI	GCWGC	2 cut(s)	231, 234
Tsp45I	GTSAC	3 cut(s)	28, 110, 443
TspDTI	ATGAA	3 cut(s)	37, 231, 306
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	2 cut(s)	77, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.