Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

2062964 .. 2063803

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1028200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGATCGAAGTCTGAATCCGTTTGTGTCACTGGCGCGTCCGGTTTCATCGGCTCCTGGCTCGTCATGAGACTCCTCGAGCGCGGTTACACCTTCCGTGCCACCGTGCGTGACCCCACGAATCAAAAGAAGGTGAAGCATCTGTTGGACTTGCCGAAGGCGGAGACGCACCTGACGCTGTGGAAGGCGGATCTGGCGGGCGAGGGAAGCTTTGATGAAGCCATACAAGGCAGCACCGGAGTGTTCCATGTTGCTACACCTATGGACTTTGAGTCCAAGGACCCCGAGCCAACAATCAATGGACTTTTGGACATCCTGAAGGCATGCCAGAAAATCAAAACAGTTCGAAGGTTGGTGTTCACATCCTCAGCAGGGGAATCGGATCCCAATAATTTGAGCCTAAGGATTAGTAAATCAGGATCGTTGAAATTTGATCAAATGGCTACAAACAGGGACCTTTCTAAAAGTTATAATAATTGTAGTCATTTGATCAAATTTCAACGGCCCGGATTCATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

174

Amino Acids

19.11

Weight (kDa)

9.01

Isoelectric Point (pI)

19.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	6 - 125	5.1e-11	NmrA-like family
Epimerase	PF01370	8 - 126	7.4e-14	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	10 - 135	1e-12	3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd	PF16363	10 - 124	3.3e-11	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	12 - 131	4.5e-11	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccII	CGCG	2 cut(s)	38, 84
AciI	CCGC	4 cut(s)	84, 161, 188, 197
AclWI	GGATC	5 cut(s)	13, 198, 377, 390, 427
AcsI	RAATTY	2 cut(s)	428, 494
AcuI	CTGAAG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	427, 500
AhdI	GACNNNNNGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	64, 158
AlwI	GGATC	5 cut(s)	13, 198, 377, 390, 427
Ama87I	CYCGRG	2 cut(s)	77, 284
AoxI	GGCC	1 cut(s)	503
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	2 cut(s)	428, 494
AspLEI	GCGC	2 cut(s)	38, 84
AspS9I	GGNCC	3 cut(s)	280, 454, 504
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	145
AsuII	TTCGAA	1 cut(s)	346
AvaI	CYCGRG	2 cut(s)	77, 284
AvaII	GGWCC	2 cut(s)	280, 454
AxyI	CCTNAGG	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	382
BbvCI	CCTCAGC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	243
BceAI	ACGGC	1 cut(s)	518
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BciT130I	CCWGG	1 cut(s)	58
BclI	TGATCA	2 cut(s)	433, 489
BcnI	CCSGG	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	64, 158
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	2 cut(s)	58, 507
Bme18I	GGWCC	2 cut(s)	280, 454
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	2 cut(s)	77, 284
BmgT120I	GGNCC	3 cut(s)	280, 454, 504
BmiI	GGNNCC	4 cut(s)	55, 282, 384, 455
BmrFI	CCNGG	2 cut(s)	58, 507
BmsI	GCATC	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	367
Bpu14I	TTCGAA	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	41, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	37
Bse21I	CCTNAGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	312, 362
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	243
Bsh1236I	CGCG	2 cut(s)	38, 84
BshFI	GGCC	1 cut(s)	505
BsiHKCI	CYCGRG	2 cut(s)	77, 284
BsiSI	CCGG	3 cut(s)	42, 237, 507
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	64, 158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	505
BsoBI	CYCGRG	2 cut(s)	77, 284
Bsp119I	TTCGAA	1 cut(s)	346
Bsp143I	GATC	6 cut(s)	5, 190, 382, 419, 433, 489
BspACI	CCGC	4 cut(s)	84, 161, 188, 197
BspANI	GGCC	1 cut(s)	505
BspCNI	CTCAG	1 cut(s)	380
BspFNI	CGCG	2 cut(s)	38, 84
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	4 cut(s)	55, 282, 384, 455
BspPI	GGATC	5 cut(s)	13, 198, 377, 390, 427
BspT104I	TTCGAA	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	6 cut(s)	5, 190, 382, 419, 433, 489
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	106, 343
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	199, 325
BstDEI	CTNAG	2 cut(s)	367, 401
BstF5I	GGATG	2 cut(s)	312, 362
BstFNI	CGCG	2 cut(s)	38, 84
BstHHI	GCGC	2 cut(s)	38, 84
BstKTI	GATC	6 cut(s)	8, 193, 385, 422, 436, 492
BstMAI	GTCTC	2 cut(s)	64, 158
BstMBI	GATC	6 cut(s)	5, 190, 382, 419, 433, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 194, 207
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	56, 505
BstUI	CGCG	2 cut(s)	38, 84
BstV1I	GCAGC	1 cut(s)	243
BstX2I	RGATCY	2 cut(s)	190, 382
BstYI	RGATCY	2 cut(s)	190, 382
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	312, 362
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	199, 325
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	2 cut(s)	38, 84
Cfr13I	GGNCC	3 cut(s)	280, 454, 504
CseI	GACGC	3 cut(s)	27, 175, 184
CviAII	CATG	3 cut(s)	67, 248, 324
CviJI	RGCY	8 cut(s)	54, 61, 210, 221, 289, 399, 443, 505
CviKI_1	RGCY	8 cut(s)	54, 61, 210, 221, 289, 399, 443, 505
DdeI	CTNAG	2 cut(s)	367, 401
DpnI	GATC	6 cut(s)	7, 192, 384, 421, 435, 491
DpnII	GATC	6 cut(s)	5, 190, 382, 419, 433, 489
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EciI	GGCGGA	2 cut(s)	176, 203
Eco130I	CCWWGG	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	280, 454
Eco57I	CTGAAG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	401
Eco88I	CYCGRG	2 cut(s)	77, 284
EcoO109I	RGGNCCY	2 cut(s)	280, 454
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	3 cut(s)	70, 251, 327
FaiI	YATR	6 cut(s)	68, 224, 249, 263, 325, 471
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	3 cut(s)	66, 247, 323
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	2 cut(s)	433, 489
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	2 cut(s)	299, 349
Fsp4HI	GCNGC	1 cut(s)	232
GlaI	GCGC	2 cut(s)	37, 83
GluI	GCNGC	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	505
HapII	CCGG	3 cut(s)	42, 237, 507
HgaI	GACGC	3 cut(s)	27, 175, 184
HhaI	GCGC	2 cut(s)	38, 84
Hin1II	CATG	3 cut(s)	70, 251, 327
Hin6I	GCGC	2 cut(s)	36, 82
HinP1I	GCGC	2 cut(s)	36, 82
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	6 cut(s)	17, 72, 121, 272, 377, 510
HpaII	CCGG	3 cut(s)	42, 237, 507
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	2 cut(s)	16, 382
Hpy188III	TCNNGA	3 cut(s)	67, 316, 417
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	6 cut(s)	103, 124, 151, 178, 313, 342
HpyCH4III	ACNGT	2 cut(s)	106, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 194, 207
HpyF3I	CTNAG	2 cut(s)	367, 401
Hsp92II	CATG	3 cut(s)	70, 251, 327
HspAI	GCGC	2 cut(s)	36, 82
Ksp22I	TGATCA	2 cut(s)	433, 489
Kzo9I	GATC	6 cut(s)	5, 190, 382, 419, 433, 489
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	148
MaeIII	GTNAC	3 cut(s)	28, 86, 110
MalI	GATC	6 cut(s)	7, 192, 384, 421, 435, 491
MboI	GATC	6 cut(s)	5, 190, 382, 419, 433, 489
MflI	RGATCY	2 cut(s)	190, 382
MluCI	AATT	4 cut(s)	391, 428, 475, 494
MlyI	GAGTC	2 cut(s)	66, 281
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	3 cut(s)	86, 196, 376
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	3 cut(s)	42, 237, 507
MspR9I	CCNGG	2 cut(s)	58, 507
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	2 cut(s)	38, 84
MwoI	GCNNNNNNNGC	3 cut(s)	175, 194, 207
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	6 cut(s)	5, 190, 382, 419, 433, 489
NlaIII	CATG	3 cut(s)	70, 251, 327
NlaIV	GGNNCC	4 cut(s)	55, 282, 384, 455
NmuCI	GTSAC	2 cut(s)	28, 110
NspI	RCATGY	1 cut(s)	327
NspV	TTCGAA	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	66
PfeI	GAWTC	4 cut(s)	17, 121, 377, 510
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	2 cut(s)	66, 280
PpsI	GAGTC	2 cut(s)	66, 280
PpuMI	RGGWCCY	2 cut(s)	280, 454
PsiI	TTATAA	1 cut(s)	471
Psp5II	RGGWCCY	2 cut(s)	280, 454
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	4 cut(s)	55, 282, 384, 455
PspPI	GGNCC	3 cut(s)	280, 454, 504
PspPPI	RGGWCCY	2 cut(s)	280, 454
PspXI	VCTCGAGB	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	190, 382
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	6 cut(s)	5, 190, 382, 419, 433, 489
Sau96I	GGNCC	3 cut(s)	280, 454, 504
SchI	GAGTC	2 cut(s)	66, 281
ScrFI	CCNGG	2 cut(s)	58, 507
SetI	ASST	7 cut(s)	95, 135, 174, 212, 262, 353, 459
SfaNI	GCATC	1 cut(s)	148
Sfr274I	CTCGAG	1 cut(s)	77
SfuI	TTCGAA	1 cut(s)	346
SinI	GGWCC	2 cut(s)	280, 454
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	4 cut(s)	391, 428, 475, 494
SsiI	CCGC	4 cut(s)	84, 161, 188, 197
StyD4I	CCNGG	2 cut(s)	56, 505
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	106, 343
TaqI	TCGA	3 cut(s)	8, 78, 346
TasI	AATT	4 cut(s)	391, 428, 475, 494
TfiI	GAWTC	4 cut(s)	17, 121, 377, 510
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	28, 110
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	2 cut(s)	28, 110
TspDTI	ATGAA	3 cut(s)	37, 231, 502
TspGWI	ACGGA	2 cut(s)	10, 86
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	280, 454
XapI	RAATTY	2 cut(s)	428, 494
XceI	RCATGY	1 cut(s)	327
XhoI	CTCGAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.