Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Reverse (-)

39606471 .. 39609508

Gene Structure 3038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTATGGCTTTAAACAGTGTAATCCCCCACACTAGAGCTTTAAGCTTAAGCACTTCCTTGCCTTCTTCTCCTCATAAAAAGCCTTCAAGCCCTCAATTTCCACACCCACAAAATCGTCGCACTGCTGCTCAAGTTGTCCAGAGCGCTGCCTCTTCCTCAACCAAGACCACCCTTCCTGACCTTGAACACCAACTTCATGAGGATGATCGCAGTAACAGCTTCAATCCCACCTCCACTTCTGCCTCTGCGTGGTCCGAATTTGCCAGAAATGTGTCCGGTGAATGGGATGGCTATGGAGCAGACTTCACAACCGAAGGGAACCCGATTGAACTCCCAGAAAGGGTTGTGCCTGATGCTTACAGGGAGTGGGAGGTTAAGGTTTTCGACTGGCAGACACAATGTCCCACTCTTGCTGACCCAGAAGACCAAGTTCTTGCCTACAAGACCATAGAGCTACTTCCCACAGTTGGATGTGAAGCCGATGCTGCTACGCGGTACAGCATCCTCGAGAGGAATGTGGGTGGTGTGAACAACAAAGTTTCTGCCTTTGCATATCAGGCTAGTGGATGTTATGTGTCTGTTTTGCCAGTGGAGGATAAGAGTTTGAATAAGTTGTTGGAAGTAGAGTATTGCTTGATCAATCCTCAAGATAAGGAGTCTCGTGTGAGGATAATTCAGGTGATTCGCATAGACAATATGAAAATGGTATTGCAGAGTCTTAGAGTTCTTTGTGAACAGTGGTATGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGCCATCCGTGATTCTGCTTTTGCTTCTACGCCCGCATTGGAAGCTTCAAAAGTTGTTGGTACTTGGCGGAGCTCCAGTGCTGTTGCCAATTTTAATGGTTCTCAAAATGACTTTCAAGAACTTTCAGGGGATAGCGAGCAGAACTCAGTAAGAGATGAAAGTGGTCTCATATTGCTTCCCAAGCAATTGTGGTGTTCAGTAAAAGAAGGTAAAGATGGCATTACTTACAGCGAGGTGGGATGGCTATTTGATGAAGGGCGTGCCATCACATCAAGATGCACCTTCTCAAGCGCAGCAACTCTGAAGGAAATCTCAGTAGCCTCTGAAACTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

373

Amino Acids

40.96

Weight (kDa)

4.98

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	496
AciI	CCGC	3 cut(s)	496, 816, 850
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	1106
AfaI	GTAC	2 cut(s)	500, 844
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	90, 188, 226, 332, 610, 831, 899
AhdI	GACNNNNNGTC	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	6 cut(s)	41, 48, 222, 457, 827, 855
AluI	AGCT	6 cut(s)	41, 48, 222, 457, 827, 855
Alw21I	GWGCWC	1 cut(s)	857
Alw26I	GTCTC	2 cut(s)	666, 953
Ama87I	CYCGRG	1 cut(s)	509
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	5 cut(s)	128, 149, 488, 1076, 1115
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	149, 1076
AspS9I	GGNCC	2 cut(s)	255, 749
AsuHPI	GGTGA	2 cut(s)	293, 694
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	857
BauI	CACGAG	1 cut(s)	663
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	857
BbvI	GCAGC	4 cut(s)	115, 136, 475, 1088
BccI	CCATC	5 cut(s)	284, 794, 992, 1017, 1055
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	666, 953
BfaI	CTAG	2 cut(s)	36, 564
BfmI	CTRYAG	1 cut(s)	1113
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	49
BisI	GCNGC	5 cut(s)	129, 150, 489, 1077, 1116
BlsI	GCNGC	5 cut(s)	130, 151, 490, 1078, 1117
Bme18I	GGWCC	1 cut(s)	255
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	255, 749
BmiI	GGNNCC	1 cut(s)	323
BmsI	GCATC	4 cut(s)	346, 475, 513, 1049
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
BpmI	CTGGAG	1 cut(s)	841
BpuEI	CTTGAG	3 cut(s)	117, 633, 1054
BsaI	GGTCTC	1 cut(s)	953
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
Bse1I	ACTGG	3 cut(s)	395, 590, 858
BseGI	GGATG	8 cut(s)	211, 295, 479, 504, 575, 785, 786, 1028
BseLI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
BseMII	CTCAG	2 cut(s)	942, 1110
BseNI	ACTGG	3 cut(s)	395, 590, 858
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	4 cut(s)	115, 136, 475, 1088
Bsh1236I	CGCG	1 cut(s)	496
BshFI	GGCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	857
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
BsmAI	GTCTC	2 cut(s)	666, 953
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	751
Bso31I	GGTCTC	1 cut(s)	953
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	857
Bsp143I	GATC	2 cut(s)	208, 639
BspACI	CCGC	3 cut(s)	496, 816, 850
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	2 cut(s)	941, 1109
BspFNI	CGCG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	323
BspMAI	CTGCAG	1 cut(s)	1117
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	953
BsrI	ACTGG	3 cut(s)	395, 590, 858
BssMI	GATC	2 cut(s)	208, 639
BssSI	CACGAG	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	663
Bst4CI	ACNGT	3 cut(s)	20, 469, 741
Bst6I	CTCTTC	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	49
BstC8I	GCNNGC	3 cut(s)	816, 920, 1044
BstDEI	CTNAG	3 cut(s)	722, 928, 1096
BstF5I	GGATG	8 cut(s)	211, 295, 479, 504, 575, 785, 786, 1028
BstFNI	CGCG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 1076
BstKTI	GATC	2 cut(s)	211, 642
BstMAI	GTCTC	2 cut(s)	666, 953
BstMBI	GATC	2 cut(s)	208, 639
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 488, 560, 824, 964
BstSFI	CTRYAG	1 cut(s)	1113
BstUI	CGCG	1 cut(s)	496
BstV1I	GCAGC	4 cut(s)	115, 136, 475, 1088
BstV2I	GAAGAC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	751
BtsCI	GGATG	8 cut(s)	211, 295, 479, 504, 575, 785, 786, 1028
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	5 cut(s)	25, 123, 597, 746, 865
Cac8I	GCNNGC	3 cut(s)	816, 920, 1044
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	2 cut(s)	149, 1076
Cfr13I	GGNCC	2 cut(s)	255, 749
Csp6I	GTAC	2 cut(s)	499, 843
CviAII	CATG	2 cut(s)	200, 1119
CviQI	GTAC	2 cut(s)	499, 843
DdeI	CTNAG	3 cut(s)	722, 928, 1096
DpnI	GATC	2 cut(s)	210, 641
DpnII	GATC	2 cut(s)	208, 639
DraI	TTTAAA	1 cut(s)	15
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	865
Ecl136II	GAGCTC	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	857
Eco31I	GGTCTC	1 cut(s)	953
Eco47I	GGWCC	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	855
Eco57I	CTGAAG	1 cut(s)	1106
Eco88I	CYCGRG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	855
EcoT38I	GRGCYC	1 cut(s)	857
FaeI	CATG	2 cut(s)	203, 1122
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	2 cut(s)	199, 1118
FauI	CCCGC	1 cut(s)	823
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	5 cut(s)	129, 150, 489, 1077, 1116
FokI	GGATG	8 cut(s)	218, 302, 486, 491, 582, 773, 792, 1035
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	5 cut(s)	129, 150, 489, 1077, 1116
FspBI	CTAG	2 cut(s)	36, 564
GlaI	GCGC	2 cut(s)	148, 1075
GluI	GCNGC	5 cut(s)	129, 150, 489, 1077, 1116
GsuI	CTGGAG	1 cut(s)	841
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	2 cut(s)	149, 1076
Hin1II	CATG	2 cut(s)	203, 1122
Hin6I	GCGC	2 cut(s)	147, 1074
HinP1I	GCGC	2 cut(s)	147, 1074
HindIII	AAGCTT	2 cut(s)	46, 825
HinfI	GANTC	4 cut(s)	659, 685, 718, 794
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	293, 694
Hpy166II	GTNNAC	2 cut(s)	532, 737
Hpy188I	TCNGA	4 cut(s)	259, 758, 1086, 1108
Hpy188III	TCNNGA	7 cut(s)	142, 179, 200, 511, 650, 899, 1056
Hpy8I	GTNNAC	2 cut(s)	532, 737
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	8 cut(s)	75, 96, 185, 311, 983, 1031, 1075, 1081
HpyCH4III	ACNGT	3 cut(s)	20, 469, 741
HpyCH4V	TGCA	4 cut(s)	554, 715, 1062, 1115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 488, 560, 824, 964
HpyF3I	CTNAG	3 cut(s)	722, 928, 1096
Hsp92II	CATG	2 cut(s)	203, 1122
HspAI	GCGC	2 cut(s)	147, 1074
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	2 cut(s)	208, 639
LmnI	GCTCC	4 cut(s)	299, 766, 852, 860
Lsp1109I	GCAGC	4 cut(s)	115, 136, 475, 1088
LweI	GCATC	4 cut(s)	346, 475, 513, 1049
MaeI	CTAG	2 cut(s)	36, 564
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	210, 641
MboI	GATC	2 cut(s)	208, 639
MboII	GAAGA	3 cut(s)	60, 147, 437
MfeI	CAATTG	1 cut(s)	968
MhlI	GDGCHC	1 cut(s)	857
MluCI	AATT	6 cut(s)	98, 260, 675, 770, 871, 968
MlyI	GAGTC	2 cut(s)	668, 727
MmeI	TCCRAC	2 cut(s)	451, 600
MseI	TTAA	5 cut(s)	14, 44, 50, 378, 876
MslI	CAYNNNNRTG	2 cut(s)	204, 1057
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	968
MvnI	CGCG	1 cut(s)	496
MwoI	GCNNNNNNNGC	5 cut(s)	219, 488, 560, 824, 964
NdeII	GATC	2 cut(s)	208, 639
NlaIII	CATG	2 cut(s)	203, 1122
NlaIV	GGNNCC	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	509
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	685, 794
PkrI	GCNGC	5 cut(s)	130, 151, 490, 1078, 1117
PleI	GAGTC	2 cut(s)	667, 726
PpsI	GAGTC	2 cut(s)	667, 726
Psp124BI	GAGCTC	1 cut(s)	857
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	255, 749
PstI	CTGCAG	1 cut(s)	1117
RsaI	GTAC	2 cut(s)	500, 844
RsaNI	GTAC	2 cut(s)	499, 843
RseI	CAYNNNNRTG	2 cut(s)	204, 1057
SacI	GAGCTC	1 cut(s)	857
SaqAI	TTAA	5 cut(s)	14, 44, 50, 378, 876
SatI	GCNGC	5 cut(s)	129, 150, 489, 1077, 1116
Sau3AI	GATC	2 cut(s)	208, 639
Sau96I	GGNCC	2 cut(s)	255, 749
SchI	GAGTC	2 cut(s)	668, 727
SduI	GDGCHC	1 cut(s)	857
SfaNI	GCATC	4 cut(s)	346, 475, 513, 1049
SfcI	CTRYAG	1 cut(s)	1113
Sfr274I	CTCGAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	204, 1057
SmlI	CTYRAG	5 cut(s)	49, 132, 509, 648, 1069
SmoI	CTYRAG	5 cut(s)	49, 132, 509, 648, 1069
Sse9I	AATT	6 cut(s)	98, 260, 675, 770, 871, 968
SsiI	CCGC	3 cut(s)	496, 816, 850
SspMI	CTAG	2 cut(s)	36, 564
SstI	GAGCTC	1 cut(s)	857
TaaI	ACNGT	3 cut(s)	20, 469, 741
TaqI	TCGA	2 cut(s)	387, 510
TasI	AATT	6 cut(s)	98, 260, 675, 770, 871, 968
TfiI	GAWTC	2 cut(s)	685, 794
Tru1I	TTAA	5 cut(s)	14, 44, 50, 378, 876
Tru9I	TTAA	5 cut(s)	14, 44, 50, 378, 876
TscAI	CASTG	5 cut(s)	25, 130, 597, 746, 865
TseI	GCWGC	5 cut(s)	128, 149, 488, 1076, 1115
TspDTI	ATGAA	4 cut(s)	188, 716, 954, 1050
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	5 cut(s)	25, 130, 597, 746, 865
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	509
XspI	CTAG	2 cut(s)	36, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.