Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

45572462 .. 45573455

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0304500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTCGTCCTTTTCAACTGAGTCACCTCGTTCTTCTTCTTCTAGCTACTACCGCAACAGCCAGGCCGGGCTTTCTCTTCACTCGGACCACCGGCCGGTGCACACCGGACTACTGGGGCAGCCGGGTGGAGTCGTGGCCGAGGATGGTCCCGCAGACATCGACGGTGTCCAAGGTGTTCGGGTCCAGAGCCTACGAACGGTACAGATCCGATCTGACGCTGCTGGAAGCGACGGCAAGGAGCGACGACGAGAACGTCTTCCCTAGGCTGCTGAAGCAGGCGAGCGCGGCGCTGCTCAACTCGTACTCCAGGAAGGGGTTCCCGTACACGGCGTGGGAGGTGAAGACTCGGGTCATACAGGGCTTGGTGTCCGAGAGGGCGGCATCCCGTCAGGCCCAGCTATTCTCTCAGGCCAATGAGGCTTGTGATCTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

145

Amino Acids

16.39

Weight (kDa)

9.92

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccII	CGCG	1 cut(s)	287
AciI	CCGC	4 cut(s)	54, 152, 287, 380
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	2 cut(s)	94, 137
AcuI	CTGAAG	1 cut(s)	293
AdeI	CACNNNGTG	1 cut(s)	333
AfaI	GTAC	3 cut(s)	203, 305, 326
AfiI	CCNNNNNNNGG	4 cut(s)	96, 198, 315, 328
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	2 cut(s)	62, 308
AluBI	AGCT	2 cut(s)	47, 400
AluI	AGCT	2 cut(s)	47, 400
Alw21I	GWGCWC	1 cut(s)	104
Alw44I	GTGCAC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	5 cut(s)	65, 94, 137, 393, 411
ApaLI	GTGCAC	1 cut(s)	100
ApeKI	GCWGC	4 cut(s)	120, 220, 268, 292
Asp700I	GAANNNNTTC	2 cut(s)	257, 317
AspA2I	CCTAGG	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	287, 292
AspS9I	GGNCC	4 cut(s)	87, 148, 183, 394
AsuC2I	CCSGG	2 cut(s)	69, 125
AsuHPI	GGTGA	2 cut(s)	17, 352
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	3 cut(s)	87, 148, 183
AvrII	CCTAGG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	104
BbsI	GAAGAC	2 cut(s)	250, 350
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	4 cut(s)	132, 207, 255, 279
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	2 cut(s)	249, 345
BciT130I	CCWGG	2 cut(s)	64, 310
BcnI	CCSGG	2 cut(s)	69, 125
BfaI	CTAG	3 cut(s)	44, 264, 436
BfoI	RGCGCY	1 cut(s)	293
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	6 cut(s)	121, 221, 269, 288, 293, 381
BlnI	CCTAGG	1 cut(s)	263
BlsI	GCNGC	6 cut(s)	122, 222, 270, 289, 294, 382
Bme1390I	CCNGG	4 cut(s)	64, 69, 125, 310
Bme18I	GGWCC	3 cut(s)	87, 148, 183
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	4 cut(s)	87, 148, 183, 394
BmiI	GGNNCC	3 cut(s)	150, 184, 320
BmrFI	CCNGG	4 cut(s)	64, 69, 125, 310
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	392
BmuI	ACTGGG	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	350
BpiI	GAAGAC	2 cut(s)	250, 350
BpmI	CTGGAG	1 cut(s)	292
BpuMI	CCSGG	2 cut(s)	69, 125
BsaJI	CCNNGG	3 cut(s)	140, 171, 263
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 198, 315, 328
Bse118I	RCCGGY	2 cut(s)	92, 96
Bse1I	ACTGG	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	64, 310
BseDI	CCNNGG	3 cut(s)	140, 171, 263
BseGI	GGATG	2 cut(s)	150, 383
BseLI	CCNNNNNNNGG	4 cut(s)	96, 198, 315, 328
BseMII	CTCAG	2 cut(s)	11, 422
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	104
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	4 cut(s)	132, 207, 255, 279
BseYI	CCCAGC	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	5 cut(s)	67, 96, 139, 395, 413
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	5 cut(s)	68, 93, 97, 107, 124
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	4 cut(s)	96, 198, 315, 328
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	5 cut(s)	67, 96, 139, 395, 413
BsoBI	CYCGRG	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	3 cut(s)	206, 211, 427
BspACI	CCGC	4 cut(s)	54, 152, 287, 380
BspANI	GGCC	5 cut(s)	67, 96, 139, 395, 413
BspCNI	CTCAG	2 cut(s)	12, 421
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	3 cut(s)	150, 184, 320
BspPI	GGATC	1 cut(s)	201
BsrFI	RCCGGY	2 cut(s)	92, 96
BsrI	ACTGG	1 cut(s)	119
BssAI	RCCGGY	2 cut(s)	92, 96
BssECI	CCNNGG	3 cut(s)	140, 171, 263
BssMI	GATC	3 cut(s)	206, 211, 427
BssT1I	CCWWGG	2 cut(s)	171, 263
Bst2UI	CCWGG	2 cut(s)	64, 310
Bst4CI	ACNGT	2 cut(s)	166, 201
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	279, 283
BstDEI	CTNAG	2 cut(s)	20, 408
BstF5I	GGATG	2 cut(s)	150, 383
BstFNI	CGCG	1 cut(s)	287
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	287, 292
BstKTI	GATC	3 cut(s)	209, 214, 430
BstMBI	GATC	3 cut(s)	206, 211, 427
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 274, 287, 419
BstNI	CCWGG	2 cut(s)	64, 310
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	4 cut(s)	62, 67, 123, 308
BstSLI	GKGCMC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	4 cut(s)	132, 207, 255, 279
BstV2I	GAAGAC	2 cut(s)	250, 350
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	5 cut(s)	67, 96, 139, 395, 413
BtsCI	GGATG	2 cut(s)	150, 383
Cac8I	GCNNGC	2 cut(s)	279, 283
CfoI	GCGC	2 cut(s)	287, 292
Cfr10I	RCCGGY	2 cut(s)	92, 96
Cfr13I	GGNCC	4 cut(s)	87, 148, 183, 394
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	3 cut(s)	202, 304, 325
CviQI	GTAC	3 cut(s)	202, 304, 325
DdeI	CTNAG	2 cut(s)	20, 408
DpnI	GATC	3 cut(s)	208, 213, 429
DpnII	GATC	3 cut(s)	206, 211, 427
DraIII	CACNNNGTG	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	2 cut(s)	94, 137
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	171, 263
Eco47I	GGWCC	3 cut(s)	87, 148, 183
Eco52I	CGGCCG	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	62, 308
EcoT14I	CCWWGG	2 cut(s)	171, 263
ErhI	CCWWGG	2 cut(s)	171, 263
FaiI	YATR	1 cut(s)	356
FaqI	GGGAC	1 cut(s)	134
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	121, 221, 269, 288, 293, 381
FokI	GGATG	2 cut(s)	157, 370
Fsp4HI	GCNGC	6 cut(s)	121, 221, 269, 288, 293, 381
FspBI	CTAG	3 cut(s)	44, 264, 436
GlaI	GCGC	2 cut(s)	286, 291
GluI	GCNGC	6 cut(s)	121, 221, 269, 288, 293, 381
GsaI	CCCAGC	1 cut(s)	400
GsuI	CTGGAG	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	5 cut(s)	67, 96, 139, 395, 413
HapII	CCGG	5 cut(s)	68, 93, 97, 107, 124
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	2 cut(s)	287, 292
Hin6I	GCGC	2 cut(s)	285, 290
HinP1I	GCGC	2 cut(s)	285, 290
HinfI	GANTC	4 cut(s)	4, 22, 131, 346
HpaII	CCGG	5 cut(s)	68, 93, 97, 107, 124
HphI	GGTGA	2 cut(s)	17, 352
Hpy166II	GTNNAC	2 cut(s)	102, 327
Hpy188I	TCNGA	4 cut(s)	87, 211, 216, 373
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	2 cut(s)	102, 327
Hpy99I	CGWCG	4 cut(s)	166, 235, 248, 251
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	166, 201
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	102, 433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 274, 287, 419
HpyF3I	CTNAG	2 cut(s)	20, 408
HpySE526I	ACGT	1 cut(s)	255
HspAI	GCGC	2 cut(s)	285, 290
Kzo9I	GATC	3 cut(s)	206, 211, 427
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	4 cut(s)	132, 207, 255, 279
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	3 cut(s)	44, 264, 436
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	3 cut(s)	208, 213, 429
MboI	GATC	3 cut(s)	206, 211, 427
MboII	GAAGA	6 cut(s)	26, 29, 32, 70, 250, 355
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	104
MlyI	GAGTC	3 cut(s)	31, 140, 340
MnlI	CCTC	5 cut(s)	38, 135, 331, 369, 412
MroXI	GAANNNNTTC	2 cut(s)	257, 317
MspI	CCGG	5 cut(s)	68, 93, 97, 107, 124
MspR9I	CCNGG	4 cut(s)	64, 69, 125, 310
MteI	GCGCNGCGC	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	64, 310
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	4 cut(s)	53, 274, 287, 419
NciI	CCSGG	2 cut(s)	69, 125
NdeII	GATC	3 cut(s)	206, 211, 427
NlaIV	GGNNCC	3 cut(s)	150, 184, 320
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	257, 317
PflFI	GACNNNGTC	1 cut(s)	166
PfoI	TCCNGGA	1 cut(s)	308
PkrI	GCNGC	6 cut(s)	122, 222, 270, 289, 294, 382
PleI	GAGTC	3 cut(s)	30, 139, 340
PpsI	GAGTC	3 cut(s)	30, 139, 340
PshAI	GACNNNNGTC	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	62, 308
PspFI	CCCAGC	1 cut(s)	396
PspGI	CCWGG	2 cut(s)	62, 308
PspN4I	GGNNCC	3 cut(s)	150, 184, 320
PspPI	GGNCC	4 cut(s)	87, 148, 183, 394
PsuI	RGATCY	1 cut(s)	206
PsyI	GACNNNGTC	1 cut(s)	166
RsaI	GTAC	3 cut(s)	203, 305, 326
RsaNI	GTAC	3 cut(s)	202, 304, 325
SatI	GCNGC	6 cut(s)	121, 221, 269, 288, 293, 381
Sau3AI	GATC	3 cut(s)	206, 211, 427
Sau96I	GGNCC	4 cut(s)	87, 148, 183, 394
SchI	GAGTC	3 cut(s)	31, 140, 340
ScrFI	CCNGG	4 cut(s)	64, 69, 125, 310
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	6 cut(s)	30, 49, 177, 258, 342, 402
SfaNI	GCATC	1 cut(s)	392
SinI	GGWCC	3 cut(s)	87, 148, 183
SsiI	CCGC	4 cut(s)	54, 152, 287, 380
SspMI	CTAG	3 cut(s)	44, 264, 436
StyD4I	CCNGG	4 cut(s)	62, 67, 123, 308
StyI	CCWWGG	2 cut(s)	171, 263
TaaI	ACNGT	2 cut(s)	166, 201
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	161
TauI	GCSGC	2 cut(s)	290, 383
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	4 cut(s)	120, 220, 268, 292
Tsp45I	GTSAC	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	100
VpaK11BI	GGWCC	3 cut(s)	87, 148, 183
XmaJI	CCTAGG	1 cut(s)	263
XmnI	GAANNNNTTC	2 cut(s)	257, 317
XspI	CTAG	3 cut(s)	44, 264, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.