Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Reverse (-)

61212441 .. 61219866

Gene Structure 7426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG418300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCGACGAATACGAGAGAGATTAATTCAAAGCCGCCTAATAAGAAGAAGGTGAACCATCTGCTGGACTTACCAAAGGCGGCGACTCACTTGACGCTGTGGAAGGCAGACCTGGCGGAGGAGGGAAGCTTCGACGAGGCCATCAAGGGATGCACCGGAGTGTTCCATGTCGCCACTCCTATGGATTTTGAGTCCAAGGACCCTGAGAACGAAGTGATCAAACCTACTATAAATGGGGTCCTAGACATCATGCAAGCATGTCTAAAAGCAAAGACTGTTAGAAGGCTAGTGTTTACATCTTCGGCTGGATCTGTCAATGTTGAAGAGACCCAAAAGCCGGTCTACAACGAAAGCAACTGGAGTGATGTCGAATTTTGCCGGAGAGTGAAGATGACTGGTTGGGTAAGTACTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

138

Amino Acids

15.41

Weight (kDa)

6.83

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_10	PF13460	23 - 116	9.9e-06	NAD(P)H-binding
Epimerase	PF01370	24 - 105	7.2e-07	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	26 - 116	7.9e-11	3-beta hydroxysteroid dehydrogenase/isomerase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccI	GTMKAC	2 cut(s)	5, 342
AciI	CCGC	3 cut(s)	35, 80, 116
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	3 cut(s)	64, 118, 337
AgsI	TTSAA	2 cut(s)	30, 323
AjnI	CCWGG	1 cut(s)	111
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	371
AseI	ATTAAT	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	199, 238
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	199, 238
BccI	CCATC	2 cut(s)	66, 149
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	2 cut(s)	242, 287
BisI	GCNGC	2 cut(s)	35, 81
BlsI	GCNGC	2 cut(s)	36, 82
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	2 cut(s)	199, 238
BmgT120I	GGNCC	2 cut(s)	199, 238
BmiI	GGNNCC	2 cut(s)	201, 239
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	379
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 118, 337
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	362, 400
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	3 cut(s)	64, 118, 337
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	362, 400
BseRI	GAGGAG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	156, 338, 379
BslI	CCNNNNNNNGG	3 cut(s)	64, 118, 337
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	216, 308
BspACI	CCGC	3 cut(s)	35, 80, 116
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	201, 239
BspPI	GGATC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	362, 400
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	216, 308
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	219, 311
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	216, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	308
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	199, 238
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	3 cut(s)	167, 250, 258
CviJI	RGCY	6 cut(s)	34, 129, 140, 286, 305, 337
CviKI_1	RGCY	6 cut(s)	34, 129, 140, 286, 305, 337
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	218, 310
DpnII	GATC	2 cut(s)	216, 308
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	199, 238
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	2 cut(s)	199, 238
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	170, 253, 261
FaiI	YATR	5 cut(s)	168, 182, 230, 251, 259
FatI	CATG	3 cut(s)	166, 249, 257
FbaI	TGATCA	1 cut(s)	216
FblI	GTMKAC	2 cut(s)	5, 342
Fnu4HI	GCNGC	2 cut(s)	35, 81
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	35, 81
FspBI	CTAG	2 cut(s)	242, 287
GluI	GCNGC	2 cut(s)	35, 81
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	156, 338, 379
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	170, 253, 261
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	2 cut(s)	85, 191
HpaII	CCGG	3 cut(s)	156, 338, 379
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	4 cut(s)	6, 55, 294, 343
Hpy8I	GTNNAC	4 cut(s)	6, 55, 294, 343
Hpy99I	CGWCG	2 cut(s)	10, 137
HpyAV	CCTTC	3 cut(s)	43, 97, 276
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	2 cut(s)	153, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	170, 253, 261
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	216, 308
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	242, 287
MalI	GATC	2 cut(s)	218, 310
MboI	GATC	2 cut(s)	216, 308
MboII	GAAGA	4 cut(s)	58, 291, 335, 400
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	2 cut(s)	25, 371
MlyI	GAGTC	2 cut(s)	79, 200
MnlI	CCTC	3 cut(s)	112, 115, 130
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	2 cut(s)	158, 179
MspI	CCGG	3 cut(s)	156, 338, 379
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	216, 308
NlaIII	CATG	3 cut(s)	170, 253, 261
NlaIV	GGNNCC	2 cut(s)	201, 239
NspI	RCATGY	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	36, 82
PleI	GAGTC	2 cut(s)	79, 199
PpsI	GAGTC	2 cut(s)	79, 199
PpuMI	RGGWCCY	2 cut(s)	199, 238
PshBI	ATTAAT	1 cut(s)	24
Psp5II	RGGWCCY	2 cut(s)	199, 238
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	201, 239
PspPI	GGNCC	2 cut(s)	199, 238
PspPPI	RGGWCCY	2 cut(s)	199, 238
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	2 cut(s)	158, 179
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	2 cut(s)	35, 81
Sau3AI	GATC	2 cut(s)	216, 308
Sau96I	GGNCC	2 cut(s)	199, 238
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	2 cut(s)	79, 200
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	4 cut(s)	54, 114, 131, 226
SfaNI	GCATC	1 cut(s)	140
SinI	GGWCC	2 cut(s)	199, 238
SmiMI	CAYNNNNRTG	2 cut(s)	158, 179
Sse9I	AATT	2 cut(s)	25, 371
SsiI	CCGC	3 cut(s)	35, 80, 116
SspMI	CTAG	2 cut(s)	242, 287
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	5, 132, 369
TasI	AATT	2 cut(s)	25, 371
TatI	WGTACW	1 cut(s)	407
TauI	GCSGC	2 cut(s)	37, 83
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	199, 238
VspI	ATTAAT	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	261
XmiI	GTMKAC	2 cut(s)	5, 342
XspI	CTAG	2 cut(s)	242, 287
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.