Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

34110835 .. 34113473

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G376400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGGCCAGAGTCTGAATCTGTTTGTGTGACGGGCGCTTCCGGTTTCATCGGCTCATGGCTCGTCATGAGACTCTTAGAGCGCGGTTACACTGTTCGAGCCACCGTGCGGGATCCTACGAATCAGAAGAAGGTGAAGCATCTGCTGGAGTTGCCAAAGGCCGAGACGCACTTGACGCTGTGGAAGGCTGACCTGGCGGACGAGGGAAGCTTTGATGAAGCCATTCAAGGCTGCACCGGAGTGTTCCATGTCGCCACTCCTATGGATTTTGAGTCCAAAGACCCCGAGAACGAAGTGATCAAGCCAACAATAAATGGGGTGCTAGACATCCTCAAGGCATGCCTCAAGGCAAAAACAGTTCGAAGGCTGGTGTTTACATCCTCAGCAGGAACCGTGAATGTCGAAGAGCACCAGAAGTCATACTATGACGAAACCGACTGGAGCGATGTTGAATTTTGCCGCTCTGTCAAAATGACTGGTTGGATGTACTTCGCCTCCAAGACTCTAGCTGAGCAAGCTGCATGGAAGTTTGCCAAAGAAAACAACATTGATTTCATTACCATTATCCCAACTCTTGTGATTGGCCCATTTCTCATGCCATCCATGCCACCAAGCCTCATCACCGGACTTTCCCCACTCACTGGAAATACATCTCATTATTCGATTATAAAGCGAGGGCAGTTCGTTCACTTGGACGACCTCTGCCTCTCTCACATATACTTGTACGAGCACCCTAAAGCTGAGGGCCGCTACATTTGTTCTTCCCATGATGCTACAATTTACGACATTGCAAAATTGCTGAGAGAAAAATACCCCGAGTACAATATTCCCACAAAGTTCGATAACATTGAGGAGAACTTGACCAATATCCATTTTTCTTCAAAGAAGTTGACGGACCACGGGTTTGAGTTCAAATACAGCTTGGAGGACATGTTCGTAGGGGCTGTTGATACCTGCAGAGCAAGGGGTTTGATCCCAATTCCTGCTGAGAAACATGAGGCTGACGACAACACCGTCGTCGATGTCAAAGTCTCCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

347

Amino Acids

38.88

Weight (kDa)

5.58

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
AasI	GACNNNNNNGTC	1 cut(s)	1013
Acc36I	ACCTGC	1 cut(s)	962
AccB7I	CCANNNNNTGG	1 cut(s)	641
AccBSI	CCGCTC	1 cut(s)	462
AccII	CGCG	1 cut(s)	84
AciI	CCGC	5 cut(s)	84, 109, 197, 460, 748
AclWI	GGATC	3 cut(s)	107, 120, 967
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	3 cut(s)	488, 725, 821
AfiI	CCNNNNNNNGG	2 cut(s)	108, 641
AflIII	ACRYGT	1 cut(s)	930
AgsI	TTSAA	4 cut(s)	227, 452, 882, 913
AjnI	CCWGG	1 cut(s)	192
AleI	CACNNNNGTG	1 cut(s)	239
AloI	GAACNNNNNNTCC	2 cut(s)	917, 949
AluBI	AGCT	5 cut(s)	210, 509, 518, 740, 921
AluI	AGCT	5 cut(s)	210, 509, 518, 740, 921
Alw21I	GWGCWC	2 cut(s)	411, 732
Alw26I	GTCTC	3 cut(s)	64, 158, 1036
AlwI	GGATC	3 cut(s)	107, 120, 967
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	2 cut(s)	284, 815
AoxI	GGCC	4 cut(s)	5, 159, 583, 745
ApeKI	GCWGC	2 cut(s)	231, 518
ApoI	RAATTY	1 cut(s)	452
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	38, 84
AspS9I	GGNCC	4 cut(s)	5, 584, 745, 895
AsuHPI	GGTGA	2 cut(s)	145, 613
AsuII	TTCGAA	1 cut(s)	361
AvaI	CYCGRG	2 cut(s)	284, 815
AvaII	GGWCC	1 cut(s)	895
BamHI	GGATCC	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	411, 732
BbvCI	CCTCAGC	2 cut(s)	382, 741
BbvI	GCAGC	2 cut(s)	218, 505
BccI	CCATC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	64, 158, 1036
BfaI	CTAG	2 cut(s)	323, 506
BfmI	CTRYAG	1 cut(s)	955
BfoI	RGCGCY	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	962
BisI	GCNGC	4 cut(s)	232, 460, 519, 748
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	4 cut(s)	233, 461, 520, 749
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	895
BmeT110I	CYCGRG	2 cut(s)	284, 815
BmgT120I	GGNCC	4 cut(s)	5, 584, 745, 895
BmiI	GGNNCC	3 cut(s)	6, 114, 391
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	148, 760
BpmI	CTGGAG	2 cut(s)	167, 460
Bpu10I	CCTNAGC	2 cut(s)	382, 741
Bpu1102I	GCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	361
BpuEI	CTTGAG	2 cut(s)	317, 329
BsaJI	CCNNGG	1 cut(s)	898
BsaWI	WCCGGW	4 cut(s)	41, 236, 623, 1034
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 509, 917, 947
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 641
Bse1I	ACTGG	3 cut(s)	443, 481, 646
Bse3DI	GCAATG	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	898
BseGI	GGATG	4 cut(s)	327, 377, 489, 599
BseLI	CCNNNNNNNGG	2 cut(s)	108, 641
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	5 cut(s)	396, 501, 732, 791, 978
BseNI	ACTGG	3 cut(s)	443, 481, 646
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	2 cut(s)	218, 505
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	7, 161, 585, 747
BsiHKAI	GWGCWC	2 cut(s)	411, 732
BsiHKCI	CYCGRG	2 cut(s)	284, 815
BsiSI	CCGG	4 cut(s)	42, 237, 624, 1035
BslI	CCNNNNNNNGG	2 cut(s)	108, 641
BsmAI	GTCTC	3 cut(s)	64, 158, 1036
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	4 cut(s)	7, 161, 585, 747
BsoBI	CYCGRG	2 cut(s)	284, 815
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	411, 732
Bsp143I	GATC	3 cut(s)	112, 297, 972
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	5 cut(s)	84, 109, 197, 460, 748
BspANI	GGCC	4 cut(s)	7, 161, 585, 747
BspCNI	CTCAG	5 cut(s)	395, 502, 733, 792, 979
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	6, 114, 391
BspMAI	CTGCAG	1 cut(s)	959
BspMI	ACCTGC	1 cut(s)	962
BspPI	GGATC	3 cut(s)	107, 120, 967
BspQI	GCTCTTC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	361
BsrBI	CCGCTC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	786
BsrI	ACTGG	3 cut(s)	443, 481, 646
BssECI	CCNNGG	1 cut(s)	898
BssMI	GATC	3 cut(s)	112, 297, 972
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	5 cut(s)	94, 106, 358, 394, 1015
Bst6I	CTCTTC	1 cut(s)	399
BstBI	TTCGAA	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	340, 516
BstDEI	CTNAG	6 cut(s)	76, 382, 510, 741, 800, 987
BstDSI	CCRYGG	1 cut(s)	898
BstF5I	GGATG	4 cut(s)	327, 377, 489, 599
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	2 cut(s)	38, 84
BstKTI	GATC	3 cut(s)	115, 300, 975
BstMAI	GTCTC	3 cut(s)	64, 158, 1036
BstMBI	GATC	3 cut(s)	112, 297, 972
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 175, 194, 515, 604
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	2 cut(s)	342, 934
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	955
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	218, 505
BstX2I	RGATCY	1 cut(s)	112
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	4 cut(s)	7, 161, 585, 747
BtgI	CCRYGG	1 cut(s)	898
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	4 cut(s)	327, 377, 489, 599
BtsIMutI	CAGTG	2 cut(s)	90, 639
BveI	ACCTGC	1 cut(s)	962
Cac8I	GCNNGC	2 cut(s)	340, 516
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	2 cut(s)	38, 84
Cfr13I	GGNCC	4 cut(s)	5, 584, 745, 895
CseI	GACGC	2 cut(s)	175, 184
Csp6I	GTAC	3 cut(s)	487, 724, 820
CviQI	GTAC	3 cut(s)	487, 724, 820
DdeI	CTNAG	6 cut(s)	76, 382, 510, 741, 800, 987
DpnI	GATC	3 cut(s)	114, 299, 974
DpnII	GATC	3 cut(s)	112, 297, 972
DrdI	GACNNNNNNGTC	1 cut(s)	1013
DseDI	GACNNNNNNGTC	1 cut(s)	1013
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EciI	GGCGGA	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	895
Eco88I	CYCGRG	2 cut(s)	284, 815
EcoRII	CCWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	158
FauI	CCCGC	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	4 cut(s)	232, 460, 519, 748
FokI	GGATG	4 cut(s)	314, 364, 496, 586
Fsp4HI	GCNGC	4 cut(s)	232, 460, 519, 748
FspBI	CTAG	2 cut(s)	323, 506
GlaI	GCGC	2 cut(s)	37, 83
GluI	GCNGC	4 cut(s)	232, 460, 519, 748
GsuI	CTGGAG	2 cut(s)	167, 460
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	4 cut(s)	7, 161, 585, 747
HapII	CCGG	4 cut(s)	42, 237, 624, 1035
HgaI	GACGC	2 cut(s)	175, 184
HhaI	GCGC	2 cut(s)	38, 84
Hin6I	GCGC	2 cut(s)	36, 82
HinP1I	GCGC	2 cut(s)	36, 82
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	6 cut(s)	11, 17, 72, 121, 272, 502
HpaII	CCGG	4 cut(s)	42, 237, 624, 1035
HphI	GGTGA	2 cut(s)	145, 613
Hpy166II	GTNNAC	3 cut(s)	375, 688, 891
Hpy188I	TCNGA	2 cut(s)	16, 126
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	3 cut(s)	375, 688, 891
Hpy99I	CGWCG	2 cut(s)	1019, 1022
HpyAV	CCTTC	3 cut(s)	124, 178, 357
HpyCH4III	ACNGT	5 cut(s)	94, 106, 358, 394, 1015
HpyCH4V	TGCA	4 cut(s)	234, 521, 791, 957
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 175, 194, 515, 604
HpyF3I	CTNAG	6 cut(s)	76, 382, 510, 741, 800, 987
HspAI	GCGC	2 cut(s)	36, 82
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	112, 297, 972
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	441
Lsp1109I	GCAGC	2 cut(s)	218, 505
LweI	GCATC	2 cut(s)	148, 760
MaeI	CTAG	2 cut(s)	323, 506
MaeIII	GTNAC	2 cut(s)	28, 86
MalI	GATC	3 cut(s)	114, 299, 974
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	3 cut(s)	112, 297, 972
MboII	GAAGA	4 cut(s)	139, 416, 753, 870
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	2 cut(s)	411, 732
MluCI	AATT	4 cut(s)	452, 777, 794, 978
MlyI	GAGTC	4 cut(s)	20, 66, 281, 496
MmeI	TCCRAC	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	1039
MslI	CAYNNNNRTG	2 cut(s)	239, 260
MspI	CCGG	4 cut(s)	42, 237, 624, 1035
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	5 cut(s)	151, 175, 194, 515, 604
NdeII	GATC	3 cut(s)	112, 297, 972
NlaIV	GGNNCC	3 cut(s)	6, 114, 391
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	2 cut(s)	342, 934
NspV	TTCGAA	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	66
PciI	ACATGT	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	1011
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	17, 121
PflMI	CCANNNNNTGG	1 cut(s)	641
PkrI	GCNGC	4 cut(s)	233, 461, 520, 749
PleI	GAGTC	4 cut(s)	19, 66, 280, 496
PpsI	GAGTC	4 cut(s)	19, 66, 280, 496
PscI	ACATGT	1 cut(s)	930
PsiI	TTATAA	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	6, 114, 391
PspPI	GGNCC	4 cut(s)	5, 584, 745, 895
PstI	CTGCAG	1 cut(s)	959
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	112
RsaI	GTAC	3 cut(s)	488, 725, 821
RsaNI	GTAC	3 cut(s)	487, 724, 820
RseI	CAYNNNNRTG	2 cut(s)	239, 260
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	1039
SatI	GCNGC	4 cut(s)	232, 460, 519, 748
Sau3AI	GATC	3 cut(s)	112, 297, 972
Sau96I	GGNCC	4 cut(s)	5, 584, 745, 895
SchI	GAGTC	4 cut(s)	20, 66, 281, 496
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	2 cut(s)	411, 732
SetI	ASST	9 cut(s)	135, 195, 212, 511, 520, 702, 742, 923, 956
SfaNI	GCATC	2 cut(s)	148, 760
SfcI	CTRYAG	1 cut(s)	955
SfuI	TTCGAA	1 cut(s)	361
SinI	GGWCC	1 cut(s)	895
SmiMI	CAYNNNNRTG	2 cut(s)	239, 260
SmlI	CTYRAG	2 cut(s)	332, 344
SmoI	CTYRAG	2 cut(s)	332, 344
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	4 cut(s)	452, 777, 794, 978
SsiI	CCGC	5 cut(s)	84, 109, 197, 460, 748
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	2 cut(s)	323, 506
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	5 cut(s)	94, 106, 358, 394, 1015
TaqI	TCGA	6 cut(s)	97, 361, 402, 662, 840, 1020
TasI	AATT	4 cut(s)	452, 777, 794, 978
TatI	WGTACW	2 cut(s)	486, 819
TauI	GCSGC	2 cut(s)	462, 750
TfiI	GAWTC	2 cut(s)	17, 121
Tru1I	TTAA	1 cut(s)	1039
Tru9I	TTAA	1 cut(s)	1039
TscAI	CASTG	2 cut(s)	97, 646
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	231, 518
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	3 cut(s)	37, 231, 544
TspGWI	ACGGA	1 cut(s)	908
TspRI	CASTG	2 cut(s)	97, 646
Van91I	CCANNNNNTGG	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	895
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	2 cut(s)	342, 934
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	2 cut(s)	323, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.