Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

1683303 .. 1683931

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGGATCGAAGTCTGAATCCGTTTGTGTCACTGGCGCGTCCGGTTTCATCAGCTCCTGGCTCGTCATGAGACTCCTCGAGCGCGGTTACACCGTCCGCGCCACCGTGCGTGACCCCACGAATCGGAAGAAGGTGAAGCATATGTTGGACTTGCTGAAGGCGGAGACGCACCTGACGCTGTGGAAGGCGGATCTGGCGGACGAGGGAAGCTTTGATGAAGCCATACAAGGCTGCACCGGAGTGTTCCATGTTGCTACACCTATGGACTTTGAGCCCAAGGACCCCGAGAATGAAGTGATCAAGCCAACAATCAATGGACTTTTGGACATCCTGAAGGCATGCCAGAAAGTTAAAACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

121

Amino Acids

13.28

Weight (kDa)

6.82

Isoelectric Point (pI)

13.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	38, 84, 99
AciI	CCGC	5 cut(s)	84, 97, 161, 188, 197
AclWI	GGATC	2 cut(s)	13, 198
AcuI	CTGAAG	2 cut(s)	176, 353
AfiI	CCNNNNNNNGG	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	2 cut(s)	54, 210
AluI	AGCT	2 cut(s)	54, 210
Alw26I	GTCTC	2 cut(s)	64, 158
AlwI	GGATC	2 cut(s)	13, 198
AlwNI	CAGNNNCTG	1 cut(s)	57
Ama87I	CYCGRG	2 cut(s)	77, 284
ApeKI	GCWGC	1 cut(s)	231
AspLEI	GCGC	3 cut(s)	38, 84, 101
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	145
AvaI	CYCGRG	2 cut(s)	77, 284
AvaII	GGWCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	58
BclI	TGATCA	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	64, 158
BisI	GCNGC	1 cut(s)	232
BlsI	GCNGC	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	280
BmeT110I	CYCGRG	2 cut(s)	77, 284
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	2 cut(s)	41, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	3 cut(s)	38, 84, 99
BsiHKCI	CYCGRG	2 cut(s)	77, 284
BsiSI	CCGG	2 cut(s)	42, 237
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	64, 158
BsmBI	CGTCTC	1 cut(s)	158
BsoBI	CYCGRG	2 cut(s)	77, 284
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	5, 190, 297
BspACI	CCGC	5 cut(s)	84, 97, 161, 188, 197
BspFNI	CGCG	3 cut(s)	38, 84, 99
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	13, 198
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	5, 190, 297
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	3 cut(s)	94, 106, 358
BstC8I	GCNNGC	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	3 cut(s)	38, 84, 99
BstHHI	GCGC	3 cut(s)	38, 84, 101
BstKTI	GATC	3 cut(s)	8, 193, 300
BstMAI	GTCTC	2 cut(s)	64, 158
BstMBI	GATC	3 cut(s)	5, 190, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 194
BstNI	CCWGG	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	56
BstUI	CGCG	3 cut(s)	38, 84, 99
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	66
CfoI	GCGC	3 cut(s)	38, 84, 101
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	3 cut(s)	27, 175, 184
CviAII	CATG	3 cut(s)	67, 248, 339
CviJI	RGCY	7 cut(s)	54, 61, 210, 221, 231, 274, 304
CviKI_1	RGCY	7 cut(s)	54, 61, 210, 221, 231, 274, 304
DpnI	GATC	3 cut(s)	7, 192, 299
DpnII	GATC	3 cut(s)	5, 190, 297
EciI	GGCGGA	3 cut(s)	176, 203, 212
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	176, 353
Eco88I	CYCGRG	2 cut(s)	77, 284
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	3 cut(s)	70, 251, 342
FaiI	YATR	7 cut(s)	68, 141, 143, 224, 249, 263, 340
FatI	CATG	3 cut(s)	66, 247, 338
FauNDI	CATATG	1 cut(s)	141
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	232
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	232
GlaI	GCGC	3 cut(s)	37, 83, 100
GluI	GCNGC	1 cut(s)	232
HapII	CCGG	2 cut(s)	42, 237
HgaI	GACGC	3 cut(s)	27, 175, 184
HhaI	GCGC	3 cut(s)	38, 84, 101
Hin1II	CATG	3 cut(s)	70, 251, 342
Hin6I	GCGC	3 cut(s)	36, 82, 99
HinP1I	GCGC	3 cut(s)	36, 82, 99
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	3 cut(s)	17, 72, 121
HpaII	CCGG	2 cut(s)	42, 237
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	16, 126
Hpy188III	TCNNGA	2 cut(s)	67, 331
HpyAV	CCTTC	4 cut(s)	124, 151, 178, 328
HpyCH4III	ACNGT	3 cut(s)	94, 106, 358
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 194
Hsp92II	CATG	3 cut(s)	70, 251, 342
HspAI	GCGC	3 cut(s)	36, 82, 99
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	5, 190, 297
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	18, 43, 55, 70, 179, 185, 250, 344, 356
Lsp1109I	GCAGC	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	28, 86, 110
MalI	GATC	3 cut(s)	7, 192, 299
MboI	GATC	3 cut(s)	5, 190, 297
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	2 cut(s)	86, 196
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	2 cut(s)	42, 237
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MvnI	CGCG	3 cut(s)	38, 84, 99
MwoI	GCNNNNNNNGC	2 cut(s)	175, 194
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	3 cut(s)	5, 190, 297
NlaIII	CATG	3 cut(s)	70, 251, 342
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	28, 110
NspI	RCATGY	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	77
PagI	TCATGA	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	17, 121
PkrI	GCNGC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	280
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	280
PspPPI	RGGWCCY	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	232
Sau3AI	GATC	3 cut(s)	5, 190, 297
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	5 cut(s)	56, 135, 174, 212, 262
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	342
SsiI	CCGC	5 cut(s)	84, 97, 161, 188, 197
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	94, 106, 358
TaqI	TCGA	2 cut(s)	8, 78
TfiI	GAWTC	2 cut(s)	17, 121
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	2 cut(s)	28, 110
TseI	GCWGC	1 cut(s)	231
Tsp45I	GTSAC	2 cut(s)	28, 110
TspDTI	ATGAA	3 cut(s)	37, 231, 306
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	280
XceI	RCATGY	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.