Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003058.1

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

71889 .. 72230

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003058.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgagacttctagagcgcggctacactgtccgagccaccgtgcgagaccctgcgaacatgaagaaggtgaagcatcttctggactttccgaaggcagctgtgaacctgacgctgtggaaggcggacctggatgtggagggaagctttgatgacgccattaagggccacgtcgtagtgttccatgtggccatgtctttttcgagtccgatgactcaaaattcattggcatggcaacatgaaacactccggtcagactcgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

87

Amino Acids

9.86

Weight (kDa)

9.16

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	18
AciI	CCGC	2 cut(s)	18, 122
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	98, 144
AluI	AGCT	2 cut(s)	98, 144
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	2 cut(s)	163, 186
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	124, 163
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	19, 96
BlsI	GCNGC	2 cut(s)	20, 97
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	124, 163
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	165, 188
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	165, 188
Bso31I	GGTCTC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	18, 122
BspANI	GGCC	2 cut(s)	165, 188
BspFNI	CGCG	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	28, 40
BstACI	GRCGYC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	165, 188
BtrI	CACGTC	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	24
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	124, 163
CseI	GACGC	2 cut(s)	118, 161
CviAII	CATG	5 cut(s)	58, 182, 190, 228, 236
CviJI	RGCY	6 cut(s)	21, 35, 98, 144, 165, 188
CviKI_1	RGCY	6 cut(s)	21, 35, 98, 144, 165, 188
EaeI	YGGCCR	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	5 cut(s)	61, 185, 193, 231, 239
FaiI	YATR	5 cut(s)	59, 183, 191, 229, 237
FatI	CATG	5 cut(s)	57, 181, 189, 227, 235
Fnu4HI	GCNGC	2 cut(s)	19, 96
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	19, 96
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	19, 96
HaeIII	GGCC	2 cut(s)	165, 188
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	2 cut(s)	118, 161
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	61, 185, 193, 231, 239
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	3 cut(s)	202, 211, 254
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	4 cut(s)	32, 90, 207, 253
Hpy188III	TCNNGA	2 cut(s)	11, 80
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	58, 85, 112
HpyCH4III	ACNGT	2 cut(s)	28, 40
HpyCH4IV	ACGT	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	61, 185, 193, 231, 239
HspAI	GCGC	1 cut(s)	16
LpnPI	CCDG	6 cut(s)	63, 65, 113, 119, 140, 260
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	168
MboII	GAAGA	2 cut(s)	68, 73
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	1 cut(s)	217
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	3 cut(s)	205, 211, 248
MnlI	CCTC	1 cut(s)	130
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	226
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	18
NlaIII	CATG	5 cut(s)	61, 185, 193, 231, 239
PkrI	GCNGC	2 cut(s)	20, 97
PleI	GAGTC	3 cut(s)	205, 210, 248
PpsI	GAGTC	3 cut(s)	205, 210, 248
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	124, 163
PvuII	CAGCTG	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	2 cut(s)	19, 96
Sau96I	GGNCC	2 cut(s)	124, 163
SchI	GAGTC	3 cut(s)	205, 211, 248
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	6 cut(s)	69, 100, 108, 129, 146, 171
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	18, 122
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	28, 40
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	200, 257
TasI	AATT	1 cut(s)	217
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	3 cut(s)	74, 210, 252
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	217
XbaI	TCTAGA	1 cut(s)	10
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.