Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002832

Physical Location & Seq

Genomic Coordinates Forward (+)

12789966 .. 12790404

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAGACTTCTAGAGCGCGGCTACACTGTCCGAGCCACCGTGCGAGACCCTGCGAACATGAAGAAGGTGAAGCATCTTCTGGACTTACCCAAGGCAGCTGCGAACCTGACGCTGTGGAAGGCGGACCTGGATGTGGAGGGAAGCTTTGAAGACGCCATTAAGGGCCACCTCGTAGAGTTCCATGTGGCCACGCCTATTTCGAGTCGGAGGACTCAAAATCCATTGGCGTGGCCACATGGAACACTCCGGTGTAGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0042175 GO:0042406 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045552 GO:0046148 GO:0046283 GO:0055114 GO:0071704 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00941 ko01100 ko01110 map00941 map01100 map01110

Pfam Domains

Protein Families

Epimerase

Protein Analysis

86

Amino Acids

9.66

Weight (kDa)

9.65

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42800
fragaria_vesca	FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520 FvH4_2g39520
malus_domestica	MD08G1028200.v1.1 MD08G1028400.v1.1 MD08G1028600.v1.1 MD15G1024100.v1.1
prunus_persica	Prupe.1G376400_v2.0.a1 Prupe.1G376400_v2.0.a1
pyrus_communis	pycom08g02250 pycom15g02070
rosa_chinensis	RchiOBHm_Chr6g0301421
rosa_laevigata	RLG00000011254 RLG00000011255
rosa_multiflora	Rmu_sc0003058.1_g000015 Rmu_sc0003058.1_g000017 Rmu_sc0014417.1_g000009 Rmu_sc0040371.1_g000001
rosa_roxburghii	Rroxscaffold_171G00441500 Rroxscaffold_7G00166830 Rroxscaffold_7G00172560
rosa_rugosa	Rorug06G0250100 Rorug06G0304400.1 Rorug06G0304500
rosa_samantha	Rh1BG361700 Rh6AG363400 Rh6AG418200 Rh6AG418300 Rh6BG371500 Rh6BG424500 Rh6CG378000 Rh6CG431700 Rh6DG417500 Rh6DG417600
rosa_wichuraiana	Rw6G031710 Rw6G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	18
AciI	CCGC	2 cut(s)	18, 122
AcoI	YGGCCR	2 cut(s)	186, 230
AcyI	GRCGYC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	126
AleI	CACNNNNGTG	1 cut(s)	247
AluBI	AGCT	2 cut(s)	98, 144
AluI	AGCT	2 cut(s)	98, 144
Alw26I	GTCTC	1 cut(s)	39
AoxI	GGCC	3 cut(s)	163, 186, 230
ApeKI	GCWGC	2 cut(s)	95, 98
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	124, 163
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	124
BalI	TGGCCA	2 cut(s)	188, 232
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	85, 107
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	3 cut(s)	19, 96, 99
BlsI	GCNGC	3 cut(s)	20, 97, 100
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	124, 163
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	85, 107
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	3 cut(s)	165, 188, 232
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	165, 188, 232
Bso31I	GGTCTC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	18, 122
BspANI	GGCC	3 cut(s)	165, 188, 232
BspFNI	CGCG	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	90
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	28, 40
BstACI	GRCGYC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	85, 107
BstV2I	GAAGAC	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	165, 188, 232
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	24
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	124, 163
CseI	GACGC	2 cut(s)	118, 161
CviAII	CATG	3 cut(s)	58, 182, 236
CviJI	RGCY	8 cut(s)	21, 35, 98, 144, 165, 188, 232, 255
CviKI_1	RGCY	8 cut(s)	21, 35, 98, 144, 165, 188, 232, 255
EaeI	YGGCCR	2 cut(s)	186, 230
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	3 cut(s)	61, 185, 239
FaiI	YATR	3 cut(s)	59, 183, 237
FatI	CATG	3 cut(s)	57, 181, 235
Fnu4HI	GCNGC	3 cut(s)	19, 96, 99
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	19, 96, 99
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	3 cut(s)	19, 96, 99
HaeIII	GGCC	3 cut(s)	165, 188, 232
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	2 cut(s)	118, 161
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	61, 185, 239
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	2 cut(s)	202, 211
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	32, 207
Hpy188III	TCNNGA	2 cut(s)	11, 80
HpyAV	CCTTC	2 cut(s)	58, 112
HpyCH4III	ACNGT	2 cut(s)	28, 40
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	61, 185, 239
HspAI	GCGC	1 cut(s)	16
LpnPI	CCDG	5 cut(s)	63, 65, 113, 119, 140
Lsp1109I	GCAGC	2 cut(s)	85, 107
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	1 cut(s)	11
MboII	GAAGA	3 cut(s)	68, 73, 161
MlsI	TGGCCA	2 cut(s)	188, 232
MluNI	TGGCCA	2 cut(s)	188, 232
MlyI	GAGTC	2 cut(s)	205, 211
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	3 cut(s)	130, 179, 201
Mox20I	TGGCCA	2 cut(s)	188, 232
MscI	TGGCCA	2 cut(s)	188, 232
MseI	TTAA	2 cut(s)	159, 259
MslI	CAYNNNNRTG	2 cut(s)	226, 247
Msp20I	TGGCCA	2 cut(s)	188, 232
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	18
NlaIII	CATG	3 cut(s)	61, 185, 239
OliI	CACNNNNGTG	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PkrI	GCNGC	3 cut(s)	20, 97, 100
PleI	GAGTC	2 cut(s)	205, 210
PpsI	GAGTC	2 cut(s)	205, 210
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	124, 163
PvuII	CAGCTG	1 cut(s)	98
RseI	CAYNNNNRTG	2 cut(s)	226, 247
SaqAI	TTAA	2 cut(s)	159, 259
SatI	GCNGC	3 cut(s)	19, 96, 99
Sau96I	GGNCC	2 cut(s)	124, 163
SchI	GAGTC	2 cut(s)	205, 211
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	6 cut(s)	69, 100, 108, 129, 146, 171
SfaNI	GCATC	1 cut(s)	82
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	2 cut(s)	226, 247
SsiI	CCGC	2 cut(s)	18, 122
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	28, 40
TaqI	TCGA	1 cut(s)	200
TauI	GCSGC	1 cut(s)	21
Tru1I	TTAA	2 cut(s)	159, 259
Tru9I	TTAA	2 cut(s)	159, 259
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	2 cut(s)	95, 98
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	124
XbaI	TCTAGA	1 cut(s)	10
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.