MD08G1028600.v1.1

Bifunctional dihydroflavonol 4-reductase flavanone

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
2087939 .. 2090678
2740 bp
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UTR
Exon/CDS
Intron
MD08G1028600.v1.1.491

Sequence Viewer

Length: 1044 bp
ATGGGATCGAAGTCTGAATCCGTTTGTGTCACTGGCGCGTCCGGTTTCATCGGCTCCTGGCTTGTCATGAGACTCCTCGAGCGCGGTTACACCGTCCGCGCCACCGTGCGTGACCCCACGAATCAGAAGAAGGTGAAGCATCTGTTGGACTTGCCGAAGGCGGAGACGCACCTGACGCTGTGGAAGGCGGACCTGGCGGACGAGGGAAGCTTTGATGAAGCCATACAAGGCTGCACCGGAGTATTCCATGTTGCTACACCTATGGACTTTGAGTCCAAGGACCCCGAGAATGAAGTGATCAAGCCAACAATCAATGGACTTTTGGACATCCTGAAGGCATGCCAGAAAGTTAAAACAGTTCGAAGGTTGGTCTTCACATCCTCAGCAGGAACCGTTATTATGGAAGAGCACAAAAAGCCGGTTTACGACGAATCCAACTGGAGCGACGTTGAATTTTGCCTCTCCGTCAAGATGACTGGTTGGATGTACTTCGTTTCCAAGACTCTAGCTGAGCAAGCTGCATGGAAGTATGCCAAAGAAAACAACATTGATTTCATCACCATTATCCCAACTCTTGTGATTGGTCCATTTCTCATGCCATCCATGCCACCAAGCCTCATCACTGGACTTTCACCAATCACACGAACTAAATCACATTATGGCATCATCAAGCAGGGGCAGTATGTTCACTTGGACGACCTCTGCAATTCTCACATCTATTTGTATGAGCATCCGAAAGCTGAGGGCCGTTACATTTGTTCGTCACATGATGCAACAATTCACGACCTTGTAAAAATGCTCAGAGAAAAATACCCTGCGTACAATATTCCCACAAAGTTCGAGGGCATTGACGACAACTTAGATACTATTCATTTTTCTTCAAAGAAGTTGAGGGACATAGGGTTTGAGTTCAAGTACAGCTTCGAGGACATGTTTGTGGGGGCTGTTGATACGTGCCGGGCAAAGGGATTGATTCCGATTCCGGCCGAGAAAACTGAGGCTGCTGATGAGAGCAACGTCGTCGACATCAAAATTGCCGCTTAA

Protein Analysis

348

Amino Acids

38.94

Weight (kDa)

6.02

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 6 - 130 9.6e-12 NmrA-like family
Epimerase PF01370 8 - 248 5.3e-28 NAD dependent epimerase/dehydratase family
KR PF08659 8 - 134 7.3e-06 KR domain
3Beta_HSD PF01073 10 - 176 2e-19 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 10 - 266 2.4e-17 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 10 - 202 1.3e-13 Male sterility protein
NAD_binding_10 PF13460 12 - 132 7e-13 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1023
AccII CGCG 3 cut(s) 38, 84, 99
AciI CCGC 6 cut(s) 84, 97, 161, 188, 197, 1038
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 1 cut(s) 452
AcuI CTGAAG 1 cut(s) 353
AfaI GTAC 3 cut(s) 488, 821, 917
AfiI CCNNNNNNNGG 1 cut(s) 964
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 3 cut(s) 452, 882, 913
AhdI GACNNNNNGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 56, 192
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 5 cut(s) 210, 509, 518, 740, 921
AluI AGCT 5 cut(s) 210, 509, 518, 740, 921
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 64, 158
AlwI GGATC 1 cut(s) 13
Ama87I CYCGRG 2 cut(s) 77, 284
AoxI GGCC 2 cut(s) 745, 984
ApeKI GCWGC 3 cut(s) 231, 518, 1001
ApoI RAATTY 1 cut(s) 452
ArsI GACNNNNNNTTYG 2 cut(s) 887, 919
AspLEI GCGC 3 cut(s) 38, 84, 101
AspS9I GGNCC 4 cut(s) 190, 280, 584, 745
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 3 cut(s) 145, 550, 624
AsuII TTCGAA 1 cut(s) 361
AvaI CYCGRG 2 cut(s) 77, 284
AvaII GGWCC 3 cut(s) 190, 280, 584
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 1 cut(s) 411
BbvCI CCTCAGC 2 cut(s) 382, 741
BbvI GCAGC 3 cut(s) 218, 505, 988
BccI CCATC 1 cut(s) 607
BceAI ACGGC 1 cut(s) 732
BcgI CGANNNNNNTGC 2 cut(s) 1003, 1037
BciT130I CCWGG 2 cut(s) 58, 194
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 1 cut(s) 959
BcoDI GTCTC 2 cut(s) 64, 158
BfaI CTAG 1 cut(s) 506
BisI GCNGC 4 cut(s) 232, 519, 1002, 1038
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 4 cut(s) 233, 520, 1003, 1039
Bme1390I CCNGG 3 cut(s) 58, 194, 959
Bme18I GGWCC 3 cut(s) 190, 280, 584
BmeRI GACNNNNNGTC 1 cut(s) 271
BmeT110I CYCGRG 2 cut(s) 77, 284
BmgT120I GGNCC 4 cut(s) 190, 280, 584, 745
BmiI GGNNCC 3 cut(s) 55, 282, 391
BmrFI CCNGG 3 cut(s) 58, 194, 959
BmsI GCATC 4 cut(s) 148, 672, 739, 760
BpiI GAAGAC 1 cut(s) 364
BpmI CTGGAG 1 cut(s) 460
Bpu10I CCTNAGC 2 cut(s) 382, 741
Bpu1102I GCTNAGC 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 361
BpuMI CCSGG 1 cut(s) 959
BsaAI YACGTR 1 cut(s) 954
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 2 cut(s) 41, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 964
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 4 cut(s) 37, 443, 481, 628
BseBI CCWGG 2 cut(s) 58, 194
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 5 cut(s) 327, 377, 489, 599, 730
BseLI CCNNNNNNNGG 1 cut(s) 964
BseMII CTCAG 5 cut(s) 396, 501, 732, 814, 987
BseNI ACTGG 4 cut(s) 37, 443, 481, 628
BseRI GAGGAG 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 984
BseXI GCAGC 3 cut(s) 218, 505, 988
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 3 cut(s) 38, 84, 99
Bsh1285I CGRYCG 1 cut(s) 987
BshFI GGCC 2 cut(s) 747, 986
BsiEI CGRYCG 1 cut(s) 987
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 2 cut(s) 77, 284
BsiSI CCGG 5 cut(s) 42, 237, 419, 958, 983
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 1 cut(s) 964
BsmAI GTCTC 2 cut(s) 64, 158
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 908
BsnI GGCC 2 cut(s) 747, 986
BsoBI CYCGRG 2 cut(s) 77, 284
Bsp119I TTCGAA 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 2 cut(s) 5, 297
Bsp1720I GCTNAGC 1 cut(s) 510
BspACI CCGC 6 cut(s) 84, 97, 161, 188, 197, 1038
BspANI GGCC 2 cut(s) 747, 986
BspCNI CTCAG 5 cut(s) 395, 502, 733, 813, 988
BspFNI CGCG 3 cut(s) 38, 84, 99
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 55, 282, 391
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 399
BspT104I TTCGAA 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 418
BsrI ACTGG 4 cut(s) 37, 443, 481, 628
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 5, 297
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 58, 194
Bst4CI ACNGT 4 cut(s) 94, 106, 358, 394
Bst6I CTCTTC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 954
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 340, 516
BstDEI CTNAG 6 cut(s) 382, 510, 741, 800, 859, 996
BstF5I GGATG 5 cut(s) 327, 377, 489, 599, 730
BstFNI CGCG 3 cut(s) 38, 84, 99
BstHHI GCGC 3 cut(s) 38, 84, 101
BstKTI GATC 2 cut(s) 8, 300
BstMAI GTCTC 2 cut(s) 64, 158
BstMBI GATC 2 cut(s) 5, 297
BstMCI CGRYCG 1 cut(s) 987
BstMWI GCNNNNNNNGC 5 cut(s) 175, 194, 415, 515, 604
BstNI CCWGG 2 cut(s) 58, 194
BstNSI RCATGY 2 cut(s) 342, 934
BstSCI CCNGG 3 cut(s) 56, 192, 957
BstUI CGCG 3 cut(s) 38, 84, 99
BstV1I GCAGC 3 cut(s) 218, 505, 988
BstV2I GAAGAC 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 984
BsuRI GGCC 2 cut(s) 747, 986
BtsCI GGATG 5 cut(s) 327, 377, 489, 599, 730
BtsIMutI CAGTG 2 cut(s) 30, 621
Cac8I GCNNGC 2 cut(s) 340, 516
CciI TCATGA 1 cut(s) 66
CfoI GCGC 3 cut(s) 38, 84, 101
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 4 cut(s) 190, 280, 584, 745
CseI GACGC 3 cut(s) 27, 175, 184
Csp6I GTAC 3 cut(s) 487, 820, 916
CviAII CATG 8 cut(s) 67, 248, 339, 522, 595, 604, 767, 931
CviQI GTAC 3 cut(s) 487, 820, 916
DdeI CTNAG 6 cut(s) 382, 510, 741, 800, 859, 996
DpnI GATC 2 cut(s) 7, 299
DpnII GATC 2 cut(s) 5, 297
DriI GACNNNNNGTC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 984
EagI CGGCCG 1 cut(s) 984
Eam1104I CTCTTC 1 cut(s) 399
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 3 cut(s) 176, 203, 212
EclXI CGGCCG 1 cut(s) 984
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 3 cut(s) 190, 280, 584
Eco52I CGGCCG 1 cut(s) 984
Eco57I CTGAAG 1 cut(s) 353
Eco88I CYCGRG 2 cut(s) 77, 284
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 2 cut(s) 56, 192
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 8 cut(s) 70, 251, 342, 525, 598, 607, 770, 934
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 1 cut(s) 908
FatI CATG 8 cut(s) 66, 247, 338, 521, 594, 603, 766, 930
FbaI TGATCA 1 cut(s) 297
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 4 cut(s) 232, 519, 1002, 1038
FokI GGATG 5 cut(s) 314, 364, 496, 586, 717
Fsp4HI GCNGC 4 cut(s) 232, 519, 1002, 1038
FspBI CTAG 1 cut(s) 506
GlaI GCGC 3 cut(s) 37, 83, 100
GluI GCNGC 4 cut(s) 232, 519, 1002, 1038
GsuI CTGGAG 1 cut(s) 460
HaeIII GGCC 2 cut(s) 747, 986
HapII CCGG 5 cut(s) 42, 237, 419, 958, 983
HgaI GACGC 3 cut(s) 27, 175, 184
HhaI GCGC 3 cut(s) 38, 84, 101
Hin1II CATG 8 cut(s) 70, 251, 342, 525, 598, 607, 770, 934
Hin6I GCGC 3 cut(s) 36, 82, 99
HinP1I GCGC 3 cut(s) 36, 82, 99
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HindIII AAGCTT 1 cut(s) 208
HinfI GANTC 8 cut(s) 17, 72, 121, 272, 431, 502, 973, 979
HpaII CCGG 5 cut(s) 42, 237, 419, 958, 983
HphI GGTGA 3 cut(s) 145, 550, 624
Hpy166II GTNNAC 3 cut(s) 424, 688, 1024
Hpy188I TCNGA 5 cut(s) 16, 126, 735, 803, 978
Hpy188III TCNNGA 4 cut(s) 67, 331, 469, 782
Hpy8I GTNNAC 3 cut(s) 424, 688, 1024
Hpy99I CGWCG 4 cut(s) 431, 449, 1022, 1025
HpyAV CCTTC 5 cut(s) 124, 151, 178, 328, 357
HpyCH4III ACNGT 4 cut(s) 94, 106, 358, 394
HpyCH4IV ACGT 3 cut(s) 447, 953, 1017
HpyCH4V TGCA 4 cut(s) 234, 521, 705, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 194, 415, 515, 604
HpyF3I CTNAG 6 cut(s) 382, 510, 741, 800, 859, 996
HpySE526I ACGT 3 cut(s) 447, 953, 1017
Hsp92II CATG 8 cut(s) 70, 251, 342, 525, 598, 607, 770, 934
HspAI GCGC 3 cut(s) 36, 82, 99
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 2 cut(s) 5, 297
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 2 cut(s) 59, 441
Lsp1109I GCAGC 3 cut(s) 218, 505, 988
LweI GCATC 4 cut(s) 148, 672, 739, 760
MaeI CTAG 1 cut(s) 506
MaeII ACGT 3 cut(s) 447, 953, 1017
MaeIII GTNAC 5 cut(s) 28, 86, 110, 749, 762
MalI GATC 2 cut(s) 7, 299
MboI GATC 2 cut(s) 5, 297
MboII GAAGA 4 cut(s) 139, 364, 416, 870
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 4 cut(s) 452, 706, 777, 1032
MlyI GAGTC 3 cut(s) 66, 281, 496
MmeI TCCRAC 3 cut(s) 126, 459, 461
MseI TTAA 2 cut(s) 351, 1042
MslI CAYNNNNRTG 1 cut(s) 935
MspI CCGG 5 cut(s) 42, 237, 419, 958, 983
MspR9I CCNGG 3 cut(s) 58, 194, 959
MvaI CCWGG 2 cut(s) 58, 194
MvnI CGCG 3 cut(s) 38, 84, 99
MwoI GCNNNNNNNGC 5 cut(s) 175, 194, 415, 515, 604
NciI CCSGG 1 cut(s) 959
NdeII GATC 2 cut(s) 5, 297
NlaIII CATG 8 cut(s) 70, 251, 342, 525, 598, 607, 770, 934
NlaIV GGNNCC 3 cut(s) 55, 282, 391
NmeAIII GCCGAG 1 cut(s) 1012
NmuCI GTSAC 3 cut(s) 28, 110, 762
NspI RCATGY 2 cut(s) 342, 934
NspV TTCGAA 1 cut(s) 361
PaeI GCATGC 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 66
PciI ACATGT 1 cut(s) 930
PciSI GCTCTTC 1 cut(s) 399
PfeI GAWTC 5 cut(s) 17, 121, 431, 973, 979
PkrI GCNGC 4 cut(s) 233, 520, 1003, 1039
PleI GAGTC 3 cut(s) 66, 280, 496
PpsI GAGTC 3 cut(s) 66, 280, 496
Ppu21I YACGTR 1 cut(s) 954
PpuMI RGGWCCY 1 cut(s) 280
PscI ACATGT 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 2 cut(s) 56, 192
PspGI CCWGG 2 cut(s) 56, 192
PspN4I GGNNCC 3 cut(s) 55, 282, 391
PspPI GGNCC 4 cut(s) 190, 280, 584, 745
PspPPI RGGWCCY 1 cut(s) 280
PspXI VCTCGAGB 1 cut(s) 77
RsaI GTAC 3 cut(s) 488, 821, 917
RsaNI GTAC 3 cut(s) 487, 820, 916
RseI CAYNNNNRTG 1 cut(s) 935
SalI GTCGAC 1 cut(s) 1022
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 351, 1042
SatI GCNGC 4 cut(s) 232, 519, 1002, 1038
Sau3AI GATC 2 cut(s) 5, 297
Sau96I GGNCC 4 cut(s) 190, 280, 584, 745
SchI GAGTC 3 cut(s) 66, 281, 496
ScrFI CCNGG 3 cut(s) 58, 194, 959
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 4 cut(s) 148, 672, 739, 760
Sfr274I CTCGAG 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 361
SinI GGWCC 3 cut(s) 190, 280, 584
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 935
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 342
Sse9I AATT 4 cut(s) 452, 706, 777, 1032
SsiI CCGC 6 cut(s) 84, 97, 161, 188, 197, 1038
SspI AATATT 1 cut(s) 826
SspMI CTAG 1 cut(s) 506
StyD4I CCNGG 3 cut(s) 56, 192, 957
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 4 cut(s) 94, 106, 358, 394
TaiI ACGT 3 cut(s) 450, 956, 1020
TaqI TCGA 6 cut(s) 8, 78, 361, 840, 924, 1023
TasI AATT 4 cut(s) 452, 706, 777, 1032
TatI WGTACW 2 cut(s) 486, 915
TauI GCSGC 1 cut(s) 1040
TfiI GAWTC 5 cut(s) 17, 121, 431, 973, 979
Tru1I TTAA 2 cut(s) 351, 1042
Tru9I TTAA 2 cut(s) 351, 1042
TscAI CASTG 2 cut(s) 37, 628
TseFI GTSAC 3 cut(s) 28, 110, 762
TseI GCWGC 3 cut(s) 231, 518, 1001
Tsp45I GTSAC 3 cut(s) 28, 110, 762
TspDTI ATGAA 5 cut(s) 37, 231, 306, 544, 860
TspGWI ACGGA 2 cut(s) 10, 454
TspRI CASTG 2 cut(s) 37, 628
VpaK11BI GGWCC 3 cut(s) 190, 280, 584
XapI RAATTY 1 cut(s) 452
XceI RCATGY 2 cut(s) 342, 934
XhoI CTCGAG 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 1023
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.