AT5G45275
ERF Family

Nodulin-like (InterPro IPR010658), Major facilitator superfamily, general substrate transporter (InterPro IPR016196)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
18334205 .. 18337396
3192 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G45275.1

Sequence Viewer

Length: 1713 bp
ATGGCGGGACAATCACGAAAATGGATGATTCTGGTAGCGACGATTTGGATTCAAGCATTCACCGGTACGAATTTCGATTTCTCGACGTATTCGTCGAATTTGAAATCGGTTCTAGGGATTTCGCAAGTACAATTGAATTATCTCGCCGTCGCTTCGGATCTTGGTAAAGTTTTCGGTTGGTCATCGGGACTTGCACTCTTGTATTTCCCTCTTTGGACGGTTCTTTTCGCGGCGGCGATTATGGGTTTCGTTGGTTATGGTGTTCAATGGCTCGTCATCACTAACGTCATCTCTTTGCCTTATATTCTGGTGTTTCTGTGTTGTTTGCTAGCTGGGCTAAGTATCTGTTGGTTCAACACAGTCTGCTTTGTGCTCTGCATCAGAAACTTCCCTGCAAACAGATCACTTGCACTTTCTCTCACAGTGAGCTTTAATGGTGTAAGTGCTGCTTTATACACTCTTGCTTACAACGCAATCAATCCTGTTTCTACAGAGCTATACCTACTCTTAAACGCTCTTGTACCTCTTTTTGTCTCATTTGCTGCACTCATCCCTATTCTTCGCCAACCGCCTCTTGAACCTCTTCCACCAGATGGAGTTCGAAGAGACTCTCTCATGTTTCTATTGCTTAACATATTAGCGGTCTTGAACGGTGTTTATCTGCTTCTCTTTCGTTCAAAGACTTCTGATGTAACTTCAGCTCGTCTTCTCTTTGGTGGATCAATACTTCTCTTGATTCTTCCTCTATGCCTCCCTGGTCTAGTCTACGCTCGCAATTGGTATCTACACAACATCCACTCCAGCTTCCGTTTAGAAGGTTCTGGTTTCATTCTTGTTGATGTTGATGAGCTTGAGATGCATAAAGGAATGGTGACACGTGAAGCCAGCCTTGAAGGCTACCAGTTGCTTAACGATGATGTAGTGCGAGCTGTCAATACTCCTGATCAGAAGAGTTTCATTGAAGATGACGACGGATGTTGTTGCACAAAGGTCATTACAAGAAATCAGCTTGGAATGTTGGGAGAGGAACATCCTCTATCTTTCCTCTTATGCAGATCAGATTTCTGGCTTTACTATATAGCCTATTTTTGCGGCGGCACGATTGGACTGGTTTACAGCAACAACCTGGGACAGATTGCACAATCTTTAGGACAAAGCTCTGAGACAACAACTCTTGTCACGCTTTATTCGTCTTTCTCATTCTTCGGTAGATTACTTTCAGCAACACCAGACTATATCAGAGCGAAGGTTTATTTTGCTAGAACTGGGTGGCTAGCCGTTGCTCTTTTACCAACCACAATTGCTCTTTTCTTGTTGGCATCATCAGGAAGCTTGGCAGCGTTACAAGCAGGAACTGCTCTAATCGGTCTAAGTTCGGGTTTCATATTTGCAGCAGCGGTTTCCATAACATCTGAGCTTTTTGGACCCAATAGCGTTGGGGTTAACCACAACATCCTCATCACAAACATACCGATAGGATCGTTGGTCTACGGTTTCTTAGCTGCTTTGGTCTATGAATCCCATAGCGTGGCTGGGTCAAAGACCGAGTCGGTTATATGTATGGGAAGAGACTGTTATCTCCAAACGTTTATGTGGTGGGGATGCTTGTCGGTGATTGGACTAGCTTCAAGTGTTGTCTTGTTTCTGAGAACCAGACGAGCCTATCAACGTTTTGAACAAGATCGGATAACTTCCAGCATGCTCTATTCTTAG

Protein Analysis

570

Amino Acids

62.54

Weight (kDa)

6.96

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 7 - 252 2.5e-91 Nodulin-like
NFD4_C PF23262 342 - 555 7.5e-51 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccB7I CCANNNNNTGG 2 cut(s) 593, 1528
AccI GTMKAC 2 cut(s) 765, 1488
AccII CGCG 1 cut(s) 230
AciI CCGC 8 cut(s) 5, 230, 233, 569, 641, 1092, 1095, 1397
AclI AACGTT 2 cut(s) 1586, 1669
AclWI GGATC 3 cut(s) 165, 727, 1486
AcsI RAATTY 2 cut(s) 70, 97
AcuI CTGAAG 1 cut(s) 681
AcvI CACGTG 1 cut(s) 878
AfaI GTAC 3 cut(s) 67, 129, 522
AfiI CCNNNNNNNGG 2 cut(s) 593, 1528
AflIII ACRYGT 1 cut(s) 875
AgeI ACCGGT 1 cut(s) 62
AjnI CCWGG 2 cut(s) 754, 1125
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 4 cut(s) 538, 600, 1157, 1563
AlwI GGATC 3 cut(s) 165, 727, 1486
AlwNI CAGNNNCTG 1 cut(s) 1355
ApeKI GCWGC 6 cut(s) 446, 542, 1337, 1391, 1394, 1502
ApoI RAATTY 2 cut(s) 70, 97
ArsI GACNNNNNNTTYG 2 cut(s) 1532, 1564
AsiGI ACCGGT 1 cut(s) 62
Asp700I GAANNNNTTC 2 cut(s) 582, 953
AspS9I GGNCC 1 cut(s) 1424
AsuHPI GGTGA 3 cut(s) 52, 883, 1624
AsuII TTCGAA 1 cut(s) 601
AsuNHI GCTAGC 2 cut(s) 328, 1273
AvaII GGWCC 1 cut(s) 1424
BbrPI CACGTG 1 cut(s) 878
BbsI GAAGAC 1 cut(s) 698
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 6 cut(s) 433, 529, 1349, 1403, 1406, 1489
BccI CCATC 1 cut(s) 587
BceAI ACGGC 2 cut(s) 131, 1262
BciT130I CCWGG 2 cut(s) 756, 1127
BclI TGATCA 1 cut(s) 943
BcoDI GTCTC 4 cut(s) 538, 600, 1157, 1563
BfaI CTAG 6 cut(s) 113, 329, 761, 1260, 1274, 1622
BfmI CTRYAG 1 cut(s) 489
BglI GCCNNNNNGGC 1 cut(s) 894
Bme1390I CCNGG 2 cut(s) 756, 1127
Bme18I GGWCC 1 cut(s) 1424
BmgT120I GGNCC 1 cut(s) 1424
BmiI GGNNCC 1 cut(s) 1426
BmrFI CCNGG 2 cut(s) 756, 1127
BmrI ACTGGG 1 cut(s) 1275
BmsI GCATC 4 cut(s) 387, 846, 1328, 1592
BmtI GCTAGC 2 cut(s) 332, 1277
BmuI ACTGGG 1 cut(s) 1275
BpiI GAAGAC 1 cut(s) 698
BplI GAGNNNNNCTC 2 cut(s) 597, 629
BpmI CTGGAG 1 cut(s) 784
Bpu14I TTCGAA 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 878
BsaJI CCNNGG 2 cut(s) 754, 1126
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 1528
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 901, 1113, 1270
BseBI CCWGG 2 cut(s) 756, 1127
BseDI CCNNGG 2 cut(s) 754, 1126
BseGI GGATG 7 cut(s) 30, 549, 792, 980, 1030, 1452, 1607
BseLI CCNNNNNNNGG 2 cut(s) 593, 1528
BseMII CTCAG 3 cut(s) 1152, 1404, 1637
BseNI ACTGG 3 cut(s) 901, 1113, 1270
BseXI GCAGC 6 cut(s) 433, 529, 1349, 1403, 1406, 1489
BseYI CCCAGC 2 cut(s) 332, 1532
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 230
BshTI ACCGGT 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 3 cut(s) 21, 201, 1143
BslI CCNNNNNNNGG 2 cut(s) 593, 1528
BsmAI GTCTC 4 cut(s) 538, 600, 1157, 1563
BsmFI GGGAC 3 cut(s) 21, 201, 1143
BsmI GAATGC 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 601
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 7 cut(s) 157, 401, 719, 943, 1055, 1478, 1681
BspACI CCGC 8 cut(s) 5, 230, 233, 569, 641, 1092, 1095, 1397
BspCNI CTCAG 3 cut(s) 1153, 1405, 1638
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 1426
BspOI GCTAGC 2 cut(s) 332, 1277
BspPI GGATC 3 cut(s) 165, 727, 1486
BspT104I TTCGAA 1 cut(s) 601
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 3 cut(s) 901, 1113, 1270
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 2 cut(s) 754, 1126
BssMI GATC 7 cut(s) 157, 401, 719, 943, 1055, 1478, 1681
Bst2UI CCWGG 2 cut(s) 756, 1127
Bst4CI ACNGT 6 cut(s) 220, 361, 424, 653, 1493, 1574
Bst6I CTCTTC 4 cut(s) 588, 598, 944, 1561
BstAPI GCANNNNNTGC 1 cut(s) 1355
BstBAI YACGTR 1 cut(s) 878
BstBI TTCGAA 1 cut(s) 601
BstC8I GCNNGC 6 cut(s) 330, 772, 886, 927, 1275, 1700
BstDEI CTNAG 7 cut(s) 338, 1161, 1370, 1413, 1498, 1646, 1710
BstF5I GGATG 7 cut(s) 30, 549, 792, 980, 1030, 1452, 1607
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 7 cut(s) 160, 404, 722, 946, 1058, 1481, 1684
BstMAI GTCTC 4 cut(s) 538, 600, 1157, 1563
BstMBI GATC 7 cut(s) 157, 401, 719, 943, 1055, 1478, 1681
BstMWI GCNNNNNNNGC 6 cut(s) 334, 470, 856, 894, 1346, 1355
BstNI CCWGG 2 cut(s) 756, 1127
BstNSI RCATGY 1 cut(s) 1702
BstSCI CCNGG 2 cut(s) 754, 1125
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 6 cut(s) 433, 529, 1349, 1403, 1406, 1489
BstV2I GAAGAC 1 cut(s) 698
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BtsCI GGATG 7 cut(s) 30, 549, 792, 980, 1030, 1452, 1607
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 6 cut(s) 330, 772, 886, 927, 1275, 1700
CaiI CAGNNNCTG 1 cut(s) 1355
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 1424
Csp6I GTAC 3 cut(s) 66, 128, 521
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 2 cut(s) 616, 1699
CviQI GTAC 3 cut(s) 66, 128, 521
DdeI CTNAG 7 cut(s) 338, 1161, 1370, 1413, 1498, 1646, 1710
DpnI GATC 7 cut(s) 159, 403, 721, 945, 1057, 1480, 1683
DpnII GATC 7 cut(s) 157, 401, 719, 943, 1055, 1478, 1681
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 4 cut(s) 588, 598, 944, 1561
EarI CTCTTC 4 cut(s) 588, 598, 944, 1561
Eco47I GGWCC 1 cut(s) 1424
Eco57I CTGAAG 1 cut(s) 681
Eco72I CACGTG 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 754, 1125
EcoT22I ATGCAT 1 cut(s) 861
FaeI CATG 2 cut(s) 619, 1702
FalI AAGNNNNNCTT 4 cut(s) 433, 465, 873, 905
FaqI GGGAC 3 cut(s) 21, 201, 1143
FatI CATG 2 cut(s) 615, 1698
FbaI TGATCA 1 cut(s) 943
FblI GTMKAC 2 cut(s) 765, 1488
FokI GGATG 7 cut(s) 37, 536, 779, 987, 1017, 1439, 1614
FspBI CTAG 6 cut(s) 113, 329, 761, 1260, 1274, 1622
GsaI CCCAGC 2 cut(s) 336, 1536
GsuI CTGGAG 1 cut(s) 784
HapII CCGG 1 cut(s) 63
Hin1II CATG 2 cut(s) 619, 1702
HincII GTYRAC 1 cut(s) 1444
HindII GTYRAC 1 cut(s) 1444
HindIII AAGCTT 1 cut(s) 1330
HinfI GANTC 6 cut(s) 28, 49, 608, 736, 1517, 1547
HpaI GTTAAC 1 cut(s) 1444
HpaII CCGG 1 cut(s) 63
HphI GGTGA 3 cut(s) 52, 883, 1624
Hpy166II GTNNAC 4 cut(s) 766, 1114, 1444, 1489
Hpy188III TCNNGA 8 cut(s) 15, 82, 186, 575, 646, 733, 941, 1326
Hpy8I GTNNAC 4 cut(s) 766, 1114, 1444, 1489
Hpy99I CGWCG 5 cut(s) 43, 88, 97, 152, 974
HpyAV CCTTC 3 cut(s) 809, 887, 1240
HpyCH4III ACNGT 6 cut(s) 220, 361, 424, 653, 1493, 1574
HpyCH4IV ACGT 5 cut(s) 86, 285, 877, 1586, 1669
HpyF10VI GCNNNNNNNGC 6 cut(s) 334, 470, 856, 894, 1346, 1355
HpyF3I CTNAG 7 cut(s) 338, 1161, 1370, 1413, 1498, 1646, 1710
HpySE526I ACGT 5 cut(s) 86, 285, 877, 1586, 1669
Hsp92II CATG 2 cut(s) 619, 1702
Ksp22I TGATCA 1 cut(s) 943
KspAI GTTAAC 1 cut(s) 1444
Kzo9I GATC 7 cut(s) 157, 401, 719, 943, 1055, 1478, 1681
Lsp1109I GCAGC 6 cut(s) 433, 529, 1349, 1403, 1406, 1489
LweI GCATC 4 cut(s) 387, 846, 1328, 1592
MaeI CTAG 6 cut(s) 113, 329, 761, 1260, 1274, 1622
MaeII ACGT 5 cut(s) 86, 285, 877, 1586, 1669
MaeIII GTNAC 4 cut(s) 691, 871, 1177, 1341
MalI GATC 7 cut(s) 159, 403, 721, 945, 1057, 1480, 1683
MboI GATC 7 cut(s) 157, 401, 719, 943, 1055, 1478, 1681
MboII GAAGA 9 cut(s) 551, 575, 615, 698, 731, 961, 974, 1195, 1578
MfeI CAATTG 3 cut(s) 131, 775, 1299
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 6 cut(s) 70, 97, 131, 136, 775, 1299
MlyI GAGTC 2 cut(s) 602, 1556
Mph1103I ATGCAT 1 cut(s) 861
MroXI GAANNNNTTC 2 cut(s) 582, 953
MseI TTAA 5 cut(s) 432, 509, 630, 909, 1443
MslI CAYNNNNRTG 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 1397
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 756, 1127
MunI CAATTG 3 cut(s) 131, 775, 1299
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 2 cut(s) 756, 1127
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 6 cut(s) 334, 470, 856, 894, 1346, 1355
NdeII GATC 7 cut(s) 157, 401, 719, 943, 1055, 1478, 1681
NheI GCTAGC 2 cut(s) 328, 1273
NlaIII CATG 2 cut(s) 619, 1702
NlaIV GGNNCC 1 cut(s) 1426
NmuCI GTSAC 2 cut(s) 871, 1177
NsiI ATGCAT 1 cut(s) 861
NspI RCATGY 1 cut(s) 1702
NspV TTCGAA 1 cut(s) 601
PaeI GCATGC 1 cut(s) 1702
PcsI WCGNNNNNNNCGW 3 cut(s) 89, 92, 1187
PctI GAATGC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 582, 953
PfeI GAWTC 4 cut(s) 28, 49, 736, 1517
PflFI GACNNNGTC 1 cut(s) 1546
PflMI CCANNNNNTGG 2 cut(s) 593, 1528
PinAI ACCGGT 1 cut(s) 62
PleI GAGTC 2 cut(s) 602, 1555
PmaCI CACGTG 1 cut(s) 878
PmlI CACGTG 1 cut(s) 878
PpsI GAGTC 2 cut(s) 602, 1555
Ppu21I YACGTR 1 cut(s) 878
Psp1406I AACGTT 2 cut(s) 1586, 1669
Psp6I CCWGG 2 cut(s) 754, 1125
PspCI CACGTG 1 cut(s) 878
PspFI CCCAGC 2 cut(s) 332, 1532
PspGI CCWGG 2 cut(s) 754, 1125
PspN4I GGNNCC 1 cut(s) 1426
PspPI GGNCC 1 cut(s) 1424
PstNI CAGNNNCTG 1 cut(s) 1355
PsuI RGATCY 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 1546
RsaI GTAC 3 cut(s) 67, 129, 522
RsaNI GTAC 3 cut(s) 66, 128, 521
RseI CAYNNNNRTG 1 cut(s) 19
SaqAI TTAA 5 cut(s) 432, 509, 630, 909, 1443
Sau3AI GATC 7 cut(s) 157, 401, 719, 943, 1055, 1478, 1681
Sau96I GGNCC 1 cut(s) 1424
SchI GAGTC 2 cut(s) 602, 1556
ScrFI CCNGG 2 cut(s) 756, 1127
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 4 cut(s) 387, 846, 1328, 1592
SfcI CTRYAG 1 cut(s) 489
SfuI TTCGAA 1 cut(s) 601
SinI GGWCC 1 cut(s) 1424
SmiMI CAYNNNNRTG 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SphI GCATGC 1 cut(s) 1702
Sse9I AATT 6 cut(s) 70, 97, 131, 136, 775, 1299
SsiI CCGC 8 cut(s) 5, 230, 233, 569, 641, 1092, 1095, 1397
SspMI CTAG 6 cut(s) 113, 329, 761, 1260, 1274, 1622
StyD4I CCNGG 2 cut(s) 754, 1125
TaaI ACNGT 6 cut(s) 220, 361, 424, 653, 1493, 1574
TaiI ACGT 5 cut(s) 89, 288, 880, 1589, 1672
TaqI TCGA 4 cut(s) 75, 83, 95, 601
TaqII GACCGA 2 cut(s) 1355, 1559
TasI AATT 6 cut(s) 70, 97, 131, 136, 775, 1299
TatI WGTACW 1 cut(s) 127
TauI GCSGC 4 cut(s) 233, 236, 1095, 1098
TfiI GAWTC 4 cut(s) 28, 49, 736, 1517
Tru1I TTAA 5 cut(s) 432, 509, 630, 909, 1443
Tru9I TTAA 5 cut(s) 432, 509, 630, 909, 1443
TscAI CASTG 1 cut(s) 429
TseFI GTSAC 2 cut(s) 871, 1177
TseI GCWGC 6 cut(s) 446, 542, 1337, 1391, 1394, 1502
Tsp45I GTSAC 2 cut(s) 871, 1177
TspDTI ATGAA 4 cut(s) 817, 946, 1372, 1530
TspGWI ACGGA 2 cut(s) 797, 987
TspRI CASTG 1 cut(s) 429
Tth111I GACNNNGTC 1 cut(s) 1546
Van91I CCANNNNNTGG 2 cut(s) 593, 1528
VpaK11BI GGWCC 1 cut(s) 1424
XapI RAATTY 2 cut(s) 70, 97
XceI RCATGY 1 cut(s) 1702
XcmI CCANNNNNNNNNTGG 1 cut(s) 1529
XmiI GTMKAC 2 cut(s) 765, 1488
XmnI GAANNNNTTC 2 cut(s) 582, 953
XspI CTAG 6 cut(s) 113, 329, 761, 1260, 1274, 1622
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.