Nodulin-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G19450 AT4G19450 AT5G45275 |
| fragaria_vesca | FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 |
| malus_domestica | MD02G1233200.v1.1 MD06G1022100.v1.1 MD07G1080400.v1.1 MD16G1287800.v1.1 |
| prunus_persica | Prupe.2G104800_v2.0.a1 Prupe.5G016300_v2.0.a1 |
| pyrus_communis | pycom06g01600 pycom07g06400 |
| rosa_chinensis | RchiOBHm_Chr1g0342361 RchiOBHm_Chr7g0214811 |
| rosa_laevigata | RLG00000002719 RLG00000002720 RLG00000029156 |
| rosa_multiflora | Rmu_co8462433.1_g000001 Rmu_sc0002308.1_g000032 Rmu_sc0012155.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00245010 Rroxscaffold_4G00312980 |
| rosa_rugosa | Rorug01G0151600.1 Rorug07G0147200 Rorug07G0147300 Rorug07G0147400 |
| rosa_samantha | Rh1AG166000 Rh1BG132500 Rh1CG154600 Rh1DG167400 Rh7AG284200 Rh7BG275100 Rh7CG303600 Rh7DG287500 |
| rosa_wichuraiana | Rw1G013870 Rw7G024250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 887 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 761 |
| AccBSI | CCGCTC | 1 cut(s) | 1140 |
| AccI | GTMKAC | 1 cut(s) | 933 |
| AccII | CGCG | 1 cut(s) | 774 |
| AclWI | GGATC | 3 cut(s) | 293, 712, 1081 |
| AcoI | YGGCCR | 1 cut(s) | 1390 |
| AcsI | RAATTY | 1 cut(s) | 1430 |
| AcuI | CTGAAG | 1 cut(s) | 687 |
| AcvI | CACGTG | 1 cut(s) | 1046 |
| AcyI | GRCGYC | 1 cut(s) | 320 |
| AfaI | GTAC | 4 cut(s) | 390, 1233, 1282, 1298 |
| AfeI | AGCGCT | 1 cut(s) | 1227 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 316, 761, 1785 |
| AflII | CTTAAG | 2 cut(s) | 1729, 1837 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 250, 652 |
| AjnI | CCWGG | 2 cut(s) | 309, 922 |
| Alw21I | GWGCWC | 4 cut(s) | 1154, 1343, 1559, 1715 |
| Alw26I | GTCTC | 4 cut(s) | 11, 19, 878, 1267 |
| AlwI | GGATC | 3 cut(s) | 293, 712, 1081 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1538, 1580 |
| Aor51HI | AGCGCT | 1 cut(s) | 1227 |
| AoxI | GGCC | 3 cut(s) | 5, 1390, 1607 |
| ApeKI | GCWGC | 6 cut(s) | 51, 614, 1406, 1574, 1577, 1685 |
| ApoI | RAATTY | 1 cut(s) | 1430 |
| AspLEI | GCGC | 3 cut(s) | 113, 119, 1228 |
| AspS9I | GGNCC | 2 cut(s) | 1446, 1607 |
| AsuHPI | GGTGA | 1 cut(s) | 1076 |
| AsuNHI | GCTAGC | 1 cut(s) | 1498 |
| AvaII | GGWCC | 1 cut(s) | 1446 |
| BanI | GGYRCC | 1 cut(s) | 887 |
| BanII | GRGCYC | 3 cut(s) | 1343, 1559, 1715 |
| BauI | CACGAG | 1 cut(s) | 1221 |
| BbrPI | CACGTG | 1 cut(s) | 1046 |
| BbsI | GAAGAC | 1 cut(s) | 1215 |
| Bbv12I | GWGCWC | 4 cut(s) | 1154, 1343, 1559, 1715 |
| BbvI | GCAGC | 6 cut(s) | 63, 626, 1393, 1586, 1589, 1697 |
| BccI | CCATC | 4 cut(s) | 163, 755, 1446, 1697 |
| BceAI | ACGGC | 2 cut(s) | 333, 442 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1782, 1816 |
| BciT130I | CCWGG | 2 cut(s) | 311, 924 |
| BclI | TGATCA | 1 cut(s) | 1858 |
| BcoDI | GTCTC | 4 cut(s) | 11, 19, 878, 1267 |
| BfaI | CTAG | 5 cut(s) | 743, 939, 969, 1310, 1499 |
| BfoI | RGCGCY | 3 cut(s) | 114, 120, 1229 |
| BfrI | CTTAAG | 2 cut(s) | 1729, 1837 |
| BglII | AGATCT | 1 cut(s) | 1106 |
| Bme1390I | CCNGG | 2 cut(s) | 311, 924 |
| Bme18I | GGWCC | 1 cut(s) | 1446 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 250, 652 |
| BmgT120I | GGNCC | 2 cut(s) | 1446, 1607 |
| BmiI | GGNNCC | 1 cut(s) | 889 |
| BmrFI | CCNGG | 2 cut(s) | 311, 924 |
| BmrI | ACTGGG | 2 cut(s) | 30, 1475 |
| BmsI | GCATC | 2 cut(s) | 519, 628 |
| BmtI | GCTAGC | 1 cut(s) | 1502 |
| BmuI | ACTGGG | 2 cut(s) | 30, 1475 |
| BpiI | GAAGAC | 1 cut(s) | 1215 |
| Bpu10I | CCTNAGC | 1 cut(s) | 574 |
| BpuEI | CTTGAG | 1 cut(s) | 1040 |
| BsaAI | YACGTR | 3 cut(s) | 11, 1046, 1424 |
| BsaHI | GRCGYC | 1 cut(s) | 320 |
| BsaWI | WCCGGW | 1 cut(s) | 1448 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 316, 761, 1785 |
| Bse1I | ACTGG | 3 cut(s) | 25, 823, 1481 |
| BseBI | CCWGG | 2 cut(s) | 311, 924 |
| BseGI | GGATG | 3 cut(s) | 198, 960, 1457 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 316, 761, 1785 |
| BseMII | CTCAG | 1 cut(s) | 1416 |
| BseNI | ACTGG | 3 cut(s) | 25, 823, 1481 |
| BseRI | GAGGAG | 2 cut(s) | 120, 866 |
| BseXI | GCAGC | 6 cut(s) | 63, 626, 1393, 1586, 1589, 1697 |
| BseYI | CCCAGC | 4 cut(s) | 100, 500, 559, 987 |
| BsgI | GTGCAG | 4 cut(s) | 317, 633, 1392, 1524 |
| Bsh1236I | CGCG | 1 cut(s) | 774 |
| BshFI | GGCC | 3 cut(s) | 7, 1392, 1609 |
| BshNI | GGYRCC | 1 cut(s) | 887 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1154, 1343, 1559, 1715 |
| BsiSI | CCGG | 1 cut(s) | 1449 |
| BslFI | GGGAC | 3 cut(s) | 247, 426, 1775 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 316, 761, 1785 |
| BsmAI | GTCTC | 4 cut(s) | 11, 19, 878, 1267 |
| BsmBI | CGTCTC | 3 cut(s) | 19, 878, 1267 |
| BsmFI | GGGAC | 3 cut(s) | 247, 426, 1775 |
| BsmI | GAATGC | 2 cut(s) | 546, 685 |
| BsnI | GGCC | 3 cut(s) | 7, 1392, 1609 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1154, 1343, 1559, 1715 |
| Bsp1407I | TGTACA | 1 cut(s) | 1296 |
| Bsp143I | GATC | 8 cut(s) | 285, 325, 717, 1015, 1073, 1106, 1186, 1858 |
| BspANI | GGCC | 3 cut(s) | 7, 1392, 1609 |
| BspCNI | CTCAG | 1 cut(s) | 1415 |
| BspFNI | CGCG | 1 cut(s) | 774 |
| BspLI | GGNNCC | 1 cut(s) | 889 |
| BspOI | GCTAGC | 1 cut(s) | 1502 |
| BspPI | GGATC | 3 cut(s) | 293, 712, 1081 |
| BspQI | GCTCTTC | 1 cut(s) | 1130 |
| BspT107I | GGYRCC | 1 cut(s) | 887 |
| BspTI | CTTAAG | 2 cut(s) | 1729, 1837 |
| BsrBI | CCGCTC | 1 cut(s) | 1140 |
| BsrGI | TGTACA | 1 cut(s) | 1296 |
| BsrI | ACTGG | 3 cut(s) | 25, 823, 1481 |
| BssMI | GATC | 8 cut(s) | 285, 325, 717, 1015, 1073, 1106, 1186, 1858 |
| BssNI | GRCGYC | 1 cut(s) | 320 |
| BssSI | CACGAG | 1 cut(s) | 1221 |
| Bst2BI | CACGAG | 1 cut(s) | 1221 |
| Bst2UI | CCWGG | 2 cut(s) | 311, 924 |
| Bst4CI | ACNGT | 5 cut(s) | 81, 393, 529, 592, 1055 |
| Bst6I | CTCTTC | 1 cut(s) | 1130 |
| BstACI | GRCGYC | 1 cut(s) | 320 |
| BstAFI | CTTAAG | 2 cut(s) | 1729, 1837 |
| BstAUI | TGTACA | 1 cut(s) | 1296 |
| BstBAI | YACGTR | 3 cut(s) | 11, 1046, 1424 |
| BstC8I | GCNNGC | 6 cut(s) | 115, 121, 360, 431, 1500, 1795 |
| BstDEI | CTNAG | 4 cut(s) | 574, 805, 880, 1402 |
| BstEII | GGTNACC | 1 cut(s) | 1082 |
| BstF5I | GGATG | 3 cut(s) | 198, 960, 1457 |
| BstFNI | CGCG | 1 cut(s) | 774 |
| BstH2I | RGCGCY | 3 cut(s) | 114, 120, 1229 |
| BstHHI | GCGC | 3 cut(s) | 113, 119, 1228 |
| BstKTI | GATC | 8 cut(s) | 288, 328, 720, 1018, 1076, 1109, 1189, 1861 |
| BstMAI | GTCTC | 4 cut(s) | 11, 19, 878, 1267 |
| BstMBI | GATC | 8 cut(s) | 285, 325, 717, 1015, 1073, 1106, 1186, 1858 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 123, 924, 984, 1198 |
| BstNI | CCWGG | 2 cut(s) | 311, 924 |
| BstNSI | RCATGY | 3 cut(s) | 433, 1797, 1853 |
| BstPI | GGTNACC | 1 cut(s) | 1082 |
| BstSCI | CCNGG | 2 cut(s) | 309, 922 |
| BstUI | CGCG | 1 cut(s) | 774 |
| BstV1I | GCAGC | 6 cut(s) | 63, 626, 1393, 1586, 1589, 1697 |
| BstV2I | GAAGAC | 1 cut(s) | 1215 |
| BstX2I | RGATCY | 3 cut(s) | 285, 1073, 1106 |
| BstYI | RGATCY | 3 cut(s) | 285, 1073, 1106 |
| BsuRI | GGCC | 3 cut(s) | 7, 1392, 1609 |
| BtsCI | GGATG | 3 cut(s) | 198, 960, 1457 |
| BtsI | GCAGTG | 2 cut(s) | 440, 1536 |
| BtsIMutI | CAGTG | 2 cut(s) | 440, 1536 |
| Cac8I | GCNNGC | 6 cut(s) | 115, 121, 360, 431, 1500, 1795 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1538, 1580 |
| CfoI | GCGC | 3 cut(s) | 113, 119, 1228 |
| Cfr13I | GGNCC | 2 cut(s) | 1446, 1607 |
| CseI | GACGC | 2 cut(s) | 36, 309 |
| Csp6I | GTAC | 4 cut(s) | 389, 1232, 1281, 1297 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 65, 100 |
| CviAII | CATG | 7 cut(s) | 367, 397, 409, 430, 1753, 1794, 1850 |
| CviQI | GTAC | 4 cut(s) | 389, 1232, 1281, 1297 |
| DdeI | CTNAG | 4 cut(s) | 574, 805, 880, 1402 |
| DpnI | GATC | 8 cut(s) | 287, 327, 719, 1017, 1075, 1108, 1188, 1860 |
| DpnII | GATC | 8 cut(s) | 285, 325, 717, 1015, 1073, 1106, 1186, 1858 |
| DriI | GACNNNNNGTC | 2 cut(s) | 250, 652 |
| EaeI | YGGCCR | 1 cut(s) | 1390 |
| Eam1104I | CTCTTC | 1 cut(s) | 1130 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 250, 652 |
| EarI | CTCTTC | 1 cut(s) | 1130 |
| EciI | GGCGGA | 2 cut(s) | 391, 719 |
| Ecl136II | GAGCTC | 3 cut(s) | 1341, 1557, 1713 |
| Eco24I | GRGCYC | 3 cut(s) | 1343, 1559, 1715 |
| Eco32I | GATATC | 1 cut(s) | 1145 |
| Eco47I | GGWCC | 1 cut(s) | 1446 |
| Eco47III | AGCGCT | 1 cut(s) | 1227 |
| Eco53kI | GAGCTC | 3 cut(s) | 1341, 1557, 1713 |
| Eco57I | CTGAAG | 1 cut(s) | 687 |
| Eco72I | CACGTG | 1 cut(s) | 1046 |
| Eco91I | GGTNACC | 1 cut(s) | 1082 |
| EcoICRI | GAGCTC | 3 cut(s) | 1341, 1557, 1713 |
| EcoO65I | GGTNACC | 1 cut(s) | 1082 |
| EcoRII | CCWGG | 2 cut(s) | 309, 922 |
| EcoRV | GATATC | 1 cut(s) | 1145 |
| EcoT22I | ATGCAT | 1 cut(s) | 1799 |
| EcoT38I | GRGCYC | 3 cut(s) | 1343, 1559, 1715 |
| Esp3I | CGTCTC | 3 cut(s) | 19, 878, 1267 |
| FaeI | CATG | 7 cut(s) | 370, 400, 412, 433, 1756, 1797, 1853 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1023, 1055, 1096, 1128 |
| FaqI | GGGAC | 3 cut(s) | 247, 426, 1775 |
| FatI | CATG | 7 cut(s) | 366, 396, 408, 429, 1752, 1793, 1849 |
| FauI | CCCGC | 1 cut(s) | 166 |
| FauNDI | CATATG | 1 cut(s) | 853 |
| FbaI | TGATCA | 1 cut(s) | 1858 |
| FblI | GTMKAC | 1 cut(s) | 933 |
| FokI | GGATG | 3 cut(s) | 205, 947, 1464 |
| FriOI | GRGCYC | 3 cut(s) | 1343, 1559, 1715 |
| FspBI | CTAG | 5 cut(s) | 743, 939, 969, 1310, 1499 |
| GlaI | GCGC | 3 cut(s) | 112, 118, 1227 |
| GsaI | CCCAGC | 4 cut(s) | 104, 504, 563, 991 |
| HaeII | RGCGCY | 3 cut(s) | 114, 120, 1229 |
| HaeIII | GGCC | 3 cut(s) | 7, 1392, 1609 |
| HapII | CCGG | 1 cut(s) | 1449 |
| HgaI | GACGC | 2 cut(s) | 36, 309 |
| HhaI | GCGC | 3 cut(s) | 113, 119, 1228 |
| Hin1I | GRCGYC | 1 cut(s) | 320 |
| Hin1II | CATG | 7 cut(s) | 370, 400, 412, 433, 1756, 1797, 1853 |
| Hin6I | GCGC | 3 cut(s) | 111, 117, 1226 |
| HinP1I | GCGC | 3 cut(s) | 111, 117, 1226 |
| HincII | GTYRAC | 3 cut(s) | 657, 1458, 1627 |
| HindII | GTYRAC | 3 cut(s) | 657, 1458, 1627 |
| HindIII | AAGCTT | 1 cut(s) | 595 |
| HpaI | GTTAAC | 1 cut(s) | 1627 |
| HpaII | CCGG | 1 cut(s) | 1449 |
| HphI | GGTGA | 1 cut(s) | 1076 |
| Hpy166II | GTNNAC | 6 cut(s) | 657, 826, 934, 1297, 1458, 1627 |
| Hpy188I | TCNGA | 7 cut(s) | 130, 168, 325, 552, 1149, 1550, 1597 |
| Hpy188III | TCNNGA | 8 cut(s) | 183, 475, 721, 743, 969, 1019, 1090, 1560 |
| Hpy8I | GTNNAC | 6 cut(s) | 657, 826, 934, 1297, 1458, 1627 |
| Hpy99I | CGWCG | 5 cut(s) | 85, 256, 265, 268, 319 |
| HpyCH4III | ACNGT | 5 cut(s) | 81, 393, 529, 592, 1055 |
| HpyCH4IV | ACGT | 5 cut(s) | 10, 1045, 1260, 1423, 1707 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 123, 924, 984, 1198 |
| HpyF3I | CTNAG | 4 cut(s) | 574, 805, 880, 1402 |
| HpySE526I | ACGT | 5 cut(s) | 10, 1045, 1260, 1423, 1707 |
| Hsp92I | GRCGYC | 1 cut(s) | 320 |
| Hsp92II | CATG | 7 cut(s) | 370, 400, 412, 433, 1756, 1797, 1853 |
| HspAI | GCGC | 3 cut(s) | 111, 117, 1226 |
| Ksp22I | TGATCA | 1 cut(s) | 1858 |
| KspAI | GTTAAC | 1 cut(s) | 1627 |
| Kzo9I | GATC | 8 cut(s) | 285, 325, 717, 1015, 1073, 1106, 1186, 1858 |
| LguI | GCTCTTC | 1 cut(s) | 1130 |
| LmnI | GCTCC | 1 cut(s) | 1346 |
| Lsp1109I | GCAGC | 6 cut(s) | 63, 626, 1393, 1586, 1589, 1697 |
| LweI | GCATC | 2 cut(s) | 519, 628 |
| MaeI | CTAG | 5 cut(s) | 743, 939, 969, 1310, 1499 |
| MaeII | ACGT | 5 cut(s) | 10, 1045, 1260, 1423, 1707 |
| MaeIII | GTNAC | 3 cut(s) | 422, 1082, 1360 |
| MalI | GATC | 8 cut(s) | 287, 327, 719, 1017, 1075, 1108, 1188, 1860 |
| MbiI | CCGCTC | 1 cut(s) | 1140 |
| MboI | GATC | 8 cut(s) | 285, 325, 717, 1015, 1073, 1106, 1186, 1858 |
| MboII | GAAGA | 6 cut(s) | 365, 476, 824, 1147, 1220, 1882 |
| MfeI | CAATTG | 2 cut(s) | 642, 1173 |
| MflI | RGATCY | 3 cut(s) | 285, 1073, 1106 |
| MhlI | GDGCHC | 4 cut(s) | 1154, 1343, 1559, 1715 |
| MluCI | AATT | 6 cut(s) | 162, 304, 642, 1060, 1173, 1430 |
| MlyI | GAGTC | 3 cut(s) | 408, 641, 770 |
| MmeI | TCCRAC | 1 cut(s) | 1728 |
| Mph1103I | ATGCAT | 1 cut(s) | 1799 |
| MseI | TTAA | 3 cut(s) | 1626, 1730, 1838 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1854 |
| MspA1I | CMGCKG | 3 cut(s) | 1192, 1406, 1580 |
| MspCI | CTTAAG | 2 cut(s) | 1729, 1837 |
| MspI | CCGG | 1 cut(s) | 1449 |
| MspR9I | CCNGG | 2 cut(s) | 311, 924 |
| MunI | CAATTG | 2 cut(s) | 642, 1173 |
| Mva1269I | GAATGC | 2 cut(s) | 546, 685 |
| MvaI | CCWGG | 2 cut(s) | 311, 924 |
| MvnI | CGCG | 1 cut(s) | 774 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 123, 924, 984, 1198 |
| NdeI | CATATG | 1 cut(s) | 853 |
| NdeII | GATC | 8 cut(s) | 285, 325, 717, 1015, 1073, 1106, 1186, 1858 |
| NheI | GCTAGC | 1 cut(s) | 1498 |
| NlaIII | CATG | 7 cut(s) | 370, 400, 412, 433, 1756, 1797, 1853 |
| NlaIV | GGNNCC | 1 cut(s) | 889 |
| NmuCI | GTSAC | 2 cut(s) | 1082, 1360 |
| NsiI | ATGCAT | 1 cut(s) | 1799 |
| NspI | RCATGY | 3 cut(s) | 433, 1797, 1853 |
| PaeI | GCATGC | 2 cut(s) | 433, 1797 |
| PciSI | GCTCTTC | 1 cut(s) | 1130 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 257, 260, 1689 |
| PctI | GAATGC | 2 cut(s) | 546, 685 |
| PfeI | GAWTC | 7 cut(s) | 196, 217, 724, 972, 1563, 1700, 1739 |
| PflFI | GACNNNGTC | 1 cut(s) | 319 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 761 |
| PleI | GAGTC | 3 cut(s) | 408, 641, 770 |
| PmaCI | CACGTG | 1 cut(s) | 1046 |
| PmlI | CACGTG | 1 cut(s) | 1046 |
| PpsI | GAGTC | 3 cut(s) | 408, 641, 770 |
| Ppu21I | YACGTR | 3 cut(s) | 11, 1046, 1424 |
| Psp124BI | GAGCTC | 3 cut(s) | 1343, 1559, 1715 |
| Psp6I | CCWGG | 2 cut(s) | 309, 922 |
| PspCI | CACGTG | 1 cut(s) | 1046 |
| PspEI | GGTNACC | 1 cut(s) | 1082 |
| PspFI | CCCAGC | 4 cut(s) | 100, 500, 559, 987 |
| PspGI | CCWGG | 2 cut(s) | 309, 922 |
| PspN4I | GGNNCC | 1 cut(s) | 889 |
| PspPI | GGNCC | 2 cut(s) | 1446, 1607 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 522, 554 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1538, 1580 |
| PsuI | RGATCY | 3 cut(s) | 285, 1073, 1106 |
| PsyI | GACNNNGTC | 1 cut(s) | 319 |
| PvuII | CAGCTG | 3 cut(s) | 1192, 1406, 1580 |
| RsaI | GTAC | 4 cut(s) | 390, 1233, 1282, 1298 |
| RsaNI | GTAC | 4 cut(s) | 389, 1232, 1281, 1297 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1854 |
| SacI | GAGCTC | 3 cut(s) | 1343, 1559, 1715 |
| SapI | GCTCTTC | 1 cut(s) | 1130 |
| SaqAI | TTAA | 3 cut(s) | 1626, 1730, 1838 |
| Sau3AI | GATC | 8 cut(s) | 285, 325, 717, 1015, 1073, 1106, 1186, 1858 |
| Sau96I | GGNCC | 2 cut(s) | 1446, 1607 |
| SchI | GAGTC | 3 cut(s) | 408, 641, 770 |
| ScrFI | CCNGG | 2 cut(s) | 311, 924 |
| SduI | GDGCHC | 4 cut(s) | 1154, 1343, 1559, 1715 |
| SfaNI | GCATC | 2 cut(s) | 519, 628 |
| SinI | GGWCC | 1 cut(s) | 1446 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1854 |
| SmlI | CTYRAG | 3 cut(s) | 1019, 1729, 1837 |
| SmoI | CTYRAG | 3 cut(s) | 1019, 1729, 1837 |
| SphI | GCATGC | 2 cut(s) | 433, 1797 |
| Sse9I | AATT | 6 cut(s) | 162, 304, 642, 1060, 1173, 1430 |
| SspI | AATATT | 1 cut(s) | 150 |
| SspMI | CTAG | 5 cut(s) | 743, 939, 969, 1310, 1499 |
| SstI | GAGCTC | 3 cut(s) | 1343, 1559, 1715 |
| StyD4I | CCNGG | 2 cut(s) | 309, 922 |
| TaaI | ACNGT | 5 cut(s) | 81, 393, 529, 592, 1055 |
| TaiI | ACGT | 5 cut(s) | 13, 1048, 1263, 1426, 1710 |
| TaqI | TCGA | 4 cut(s) | 182, 243, 1242, 1742 |
| TasI | AATT | 6 cut(s) | 162, 304, 642, 1060, 1173, 1430 |
| TatI | WGTACW | 2 cut(s) | 388, 1296 |
| TauI | GCSGC | 4 cut(s) | 100, 126, 713, 774 |
| TfiI | GAWTC | 7 cut(s) | 196, 217, 724, 972, 1563, 1700, 1739 |
| Tru1I | TTAA | 3 cut(s) | 1626, 1730, 1838 |
| Tru9I | TTAA | 3 cut(s) | 1626, 1730, 1838 |
| TscAI | CASTG | 2 cut(s) | 440, 1543 |
| TseFI | GTSAC | 2 cut(s) | 1082, 1360 |
| TseI | GCWGC | 6 cut(s) | 51, 614, 1406, 1574, 1577, 1685 |
| Tsp45I | GTSAC | 2 cut(s) | 1082, 1360 |
| TspDTI | ATGAA | 7 cut(s) | 385, 397, 941, 1016, 1073, 1362, 1555 |
| TspRI | CASTG | 2 cut(s) | 440, 1543 |
| Tth111I | GACNNNGTC | 1 cut(s) | 319 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 761 |
| Vha464I | CTTAAG | 2 cut(s) | 1729, 1837 |
| VpaK11BI | GGWCC | 1 cut(s) | 1446 |
| XapI | RAATTY | 1 cut(s) | 1430 |
| XbaI | TCTAGA | 2 cut(s) | 742, 968 |
| XceI | RCATGY | 3 cut(s) | 433, 1797, 1853 |
| XmiI | GTMKAC | 1 cut(s) | 933 |
| XspI | CTAG | 5 cut(s) | 743, 939, 969, 1310, 1499 |
| Zsp2I | ATGCAT | 1 cut(s) | 1799 |