FvH4_7g07730

Nodulin-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
7586388 .. 7589805
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07730.t3

Sequence Viewer

Length: 1698 bp
ATGGTGGGAGAATCAAGAAAATGGATGATACTTGTGGTAACAACATGGATTCAGGCATTTACAGGCACCAACTTCGACTTCTCGTCCTACTCTTCCGAATTGAAGACGGTTCTTGGGATATCTCAGGTGCAACTCAACTACCTTTCTGTGGCCTCAGACATGGGCAAGGCCTTAGGGTGGTGTTCTGGTGTTTCCCTCATGTATTTACCTTTGTGGGTTGTCATGTTCATGGCTGCCTTGATGGGTTTGTTTGGTTACGGCCTCCAATGGTTTGTCATCGAAAGAATGATCACCCTGCCGTATGTTCTGGTATTCTTTTTGTGCTTGTTGGCAGGATGTAGCATCTGTTGGTTCAACACAGTCTGCTATGTATTATGTATTCGGCACTTCCAAGCCAACAGGGCACTTGCATTGTCCCTAACAATCAGTTTCAATGGCGTAAGTGCAGCCCTCTACAGCCTCATTGCCAATGCCATAAACCCTTCTGATGACAACCTCTACCTCTTCTTGAATGCACTAGTCCCTCTCTTCATATCTGGTGTTGCGCTAGTCCCTCTGCTTCGTCAACCCCCTCCGATTCAGCCACTTTCTTCTGAGGCTATTCATCGTGACTCCATGGTTTTTCTTTGCCTGTACATCCTAGCAGTAGTAACTGGCCTATATCTCCTCCTCCTCAACTCACTGTCCTCTAATATATCAAATGCTCGAATTCTCTTGGTTGGTGCTATTTTTCTCTTGATCCTACCTTTGTGTCTGCCTGGCATTGCATATGCTAGGGAATGGGCTTGTCGGAACATGCCCTTCAGCTTCCAGAATGAAAACTCATCAGACTTCAATCTGGTCAACCCTGATGATCTTGAACTCCATAAGGAACTGATTGGTGAAAATGAAAATGGTAATGTGGTGAATGCTACTTCTTATGGGCTGATAGACAAAGAAGGTTGTTTATGGTGTTTTGGGAAGGTGATGGAGAAGGACAGATTGACAGTGCTTGGGGAGGAACACTCCGCTCGGTTGCTTGTACGCCGCTGGGATTTTTGGTTATACTATGCTGCATATTTTTGTGGGGGAACTATTGGATTGGTCTATAGCAACAATCTTGGGCAGATTTCAGAATCACTTGGGTATAGTAGCATGACCAGTTCTCTTGTCACACTATATTCTTCATGCTCCTTCTTTGGTCGATTACTAGCAGCTGCCCCAGATTTCCTGCGAGATAAGATATACTTTGCGAGGACTGGATGGCTTGCAGTTGCGCTGGTGCCAACACCAATCGGCTTCCTCCTGCTTACTCTATCAGGCAGTGAAGCAATGTTGCGCGCCGGAACAGGCTTGATAGGGATAAGCTCTGGCTTTGTGTTTTCTGCAGCGGTGTCTGTAACATCTGAGCTCTTTGGGCCAAACAGCGCTGGTGTAAACCACAACATCCTCATCACCAACATCCCTATTGGTTCACTGCTGTACGGCCTTCTTGCAGCTTTGGTGTATGATGCAAACGAAGGAAGCTCAGTGATCCAAGTGAACTTGTTAAAAGAAGCAACATTGTGCATGGGTAGGTCATGCTATAGGCAGACATTCATATGGTGGAGTTGTATTTCAGTTGTAGGGTTAGCATCAAGCATCTTGCTATTCCTACGGACCAGAGCTGCTTACAACCGTTTTGAGAGGAACAGATGTCAATCAGAGTCCTCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

62.25

Weight (kDa)

6.24

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 2 - 153 9.5e-37 Nodulin-like
NFD4_C PF23262 233 - 450 3.9e-50 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 65, 1261
AccBSI CCGCTC 1 cut(s) 1010
AccII CGCG 1 cut(s) 1320
AciI CCGC 3 cut(s) 1008, 1027, 1370
AclWI GGATC 2 cut(s) 733, 1507
AcsI RAATTY 1 cut(s) 708
AcuI CTGAAG 1 cut(s) 787
AfaI GTAC 3 cut(s) 635, 1023, 1463
AfeI AGCGCT 1 cut(s) 1408
AfiI CCNNNNNNNGG 2 cut(s) 148, 177
AgsI TTSAA 6 cut(s) 103, 355, 433, 511, 835, 860
AhdI GACNNNNNGTC 1 cut(s) 82
AhlI ACTAGT 1 cut(s) 517
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 7 cut(s) 807, 1196, 1347, 1390, 1478, 1506, 1646
AluI AGCT 7 cut(s) 807, 1196, 1347, 1390, 1478, 1506, 1646
Alw21I GWGCWC 1 cut(s) 1392
AlwI GGATC 2 cut(s) 733, 1507
Aor51HI AGCGCT 1 cut(s) 1408
AoxI GGCC 6 cut(s) 150, 168, 259, 655, 1397, 1465
ApeKI GCWGC 8 cut(s) 233, 446, 1052, 1193, 1196, 1367, 1475, 1646
ApoI RAATTY 1 cut(s) 708
AspLEI GCGC 5 cut(s) 547, 1258, 1320, 1322, 1409
AspS9I GGNCC 2 cut(s) 1397, 1638
AsuHPI GGTGA 5 cut(s) 283, 893, 916, 976, 1426
AvaII GGWCC 1 cut(s) 1638
AxyI CCTNAGG 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 406
BanI GGYRCC 2 cut(s) 65, 1261
BanII GRGCYC 1 cut(s) 1392
BbsI GAAGAC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 1392
BbvI GCAGC 8 cut(s) 220, 458, 1039, 1183, 1205, 1379, 1487, 1633
BccI CCATC 3 cut(s) 235, 961, 1236
BceAI ACGGC 3 cut(s) 274, 283, 1480
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 1 cut(s) 759
BclI TGATCA 1 cut(s) 288
BcuI ACTAGT 1 cut(s) 517
BfaI CTAG 5 cut(s) 518, 548, 641, 774, 1190
BfmI CTRYAG 4 cut(s) 454, 1087, 1365, 1564
BfoI RGCGCY 1 cut(s) 1410
BglI GCCNNNNNGGC 1 cut(s) 401
BisI GCNGC 9 cut(s) 234, 447, 1027, 1053, 1194, 1197, 1368, 1476, 1647
BlsI GCNGC 9 cut(s) 235, 448, 1028, 1054, 1195, 1198, 1369, 1477, 1648
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 1 cut(s) 1638
BmeRI GACNNNNNGTC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 1397, 1638
BmiI GGNNCC 2 cut(s) 67, 1263
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 4 cut(s) 351, 1480, 1622, 1629
BpiI GAAGAC 1 cut(s) 110
BplI GAGNNNNNCTC 3 cut(s) 989, 1021, 1676
BsaBI GATNNNNATC 1 cut(s) 1678
BsaJI CCNNGG 1 cut(s) 615
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 177
Bse1I ACTGG 3 cut(s) 658, 1140, 1243
Bse21I CCTNAGG 1 cut(s) 172
Bse3DI GCAATG 3 cut(s) 462, 762, 1317
Bse8I GATNNNNATC 1 cut(s) 1678
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 6 cut(s) 30, 341, 636, 1247, 1425, 1440
BseJI GATNNNNATC 1 cut(s) 1678
BseLI CCNNNNNNNGG 2 cut(s) 148, 177
BseMI GCAATG 3 cut(s) 462, 762, 1317
BseMII CTCAG 5 cut(s) 137, 168, 585, 1377, 1521
BseNI ACTGG 3 cut(s) 658, 1140, 1243
BsePI GCGCGC 1 cut(s) 1318
BseRI GAGGAG 4 cut(s) 656, 659, 662, 1681
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 8 cut(s) 220, 458, 1039, 1183, 1205, 1379, 1487, 1633
BseYI CCCAGC 1 cut(s) 1029
BsgI GTGCAG 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 1320
BshFI GGCC 6 cut(s) 152, 170, 261, 657, 1399, 1467
BshNI GGYRCC 2 cut(s) 65, 1261
BsiHKAI GWGCWC 1 cut(s) 1392
BsiSI CCGG 1 cut(s) 1323
BslFI GGGAC 3 cut(s) 400, 506, 536
BslI CCNNNNNNNGG 2 cut(s) 148, 177
BsmFI GGGAC 3 cut(s) 400, 506, 536
BsmI GAATGC 2 cut(s) 517, 913
BsnI GGCC 6 cut(s) 152, 170, 261, 657, 1399, 1467
Bsp1286I GDGCHC 2 cut(s) 406, 1392
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 4 cut(s) 288, 738, 853, 1512
Bsp19I CCATGG 1 cut(s) 615
BspACI CCGC 3 cut(s) 1008, 1027, 1370
BspANI GGCC 6 cut(s) 152, 170, 261, 657, 1399, 1467
BspCNI CTCAG 5 cut(s) 136, 167, 586, 1378, 1520
BspFNI CGCG 1 cut(s) 1320
BspLI GGNNCC 2 cut(s) 67, 1263
BspMAI CTGCAG 1 cut(s) 1369
BspPI GGATC 2 cut(s) 733, 1507
BspT107I GGYRCC 2 cut(s) 65, 1261
BsrBI CCGCTC 1 cut(s) 1010
BsrDI GCAATG 3 cut(s) 462, 762, 1317
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 3 cut(s) 658, 1140, 1243
BssECI CCNNGG 1 cut(s) 615
BssHII GCGCGC 1 cut(s) 1318
BssMI GATC 4 cut(s) 288, 738, 853, 1512
BssT1I CCWWGG 1 cut(s) 615
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 5 cut(s) 109, 361, 684, 988, 1658
Bst6I CTCTTC 3 cut(s) 97, 509, 533
BstAUI TGTACA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 1248, 1320
BstDEI CTNAG 7 cut(s) 123, 154, 172, 594, 1386, 1507, 1695
BstDSI CCRYGG 1 cut(s) 615
BstF5I GGATG 6 cut(s) 30, 341, 636, 1247, 1425, 1440
BstFNI CGCG 1 cut(s) 1320
BstH2I RGCGCY 1 cut(s) 1410
BstHHI GCGC 5 cut(s) 547, 1258, 1320, 1322, 1409
BstKTI GATC 4 cut(s) 291, 741, 856, 1515
BstMBI GATC 4 cut(s) 288, 738, 853, 1512
BstMWI GCNNNNNNNGC 2 cut(s) 401, 1396
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 799
BstSCI CCNGG 1 cut(s) 757
BstSFI CTRYAG 4 cut(s) 454, 1087, 1365, 1564
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 1320
BstV1I GCAGC 8 cut(s) 220, 458, 1039, 1183, 1205, 1379, 1487, 1633
BstV2I GAAGAC 1 cut(s) 110
Bsu36I CCTNAGG 1 cut(s) 172
BsuRI GGCC 6 cut(s) 152, 170, 261, 657, 1399, 1467
BtgI CCRYGG 1 cut(s) 615
BtsCI GGATG 6 cut(s) 30, 341, 636, 1247, 1425, 1440
BtsI GCAGTG 2 cut(s) 1309, 1454
BtsIMutI CAGTG 5 cut(s) 680, 993, 1309, 1454, 1515
Cac8I GCNNGC 2 cut(s) 1248, 1320
CfoI GCGC 5 cut(s) 547, 1258, 1320, 1322, 1409
Cfr13I GGNCC 2 cut(s) 1397, 1638
Csp6I GTAC 3 cut(s) 634, 1022, 1462
CviQI GTAC 3 cut(s) 634, 1022, 1462
DdeI CTNAG 7 cut(s) 123, 154, 172, 594, 1386, 1507, 1695
DpnI GATC 4 cut(s) 290, 740, 855, 1514
DpnII GATC 4 cut(s) 288, 738, 853, 1512
DriI GACNNNNNGTC 1 cut(s) 82
Eam1104I CTCTTC 3 cut(s) 97, 509, 533
Eam1105I GACNNNNNGTC 1 cut(s) 82
EarI CTCTTC 3 cut(s) 97, 509, 533
Ecl136II GAGCTC 1 cut(s) 1390
Eco130I CCWWGG 1 cut(s) 615
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 1392
Eco32I GATATC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 1638
Eco47III AGCGCT 1 cut(s) 1408
Eco53kI GAGCTC 1 cut(s) 1390
Eco57I CTGAAG 1 cut(s) 787
Eco81I CCTNAGG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 1390
EcoRI GAATTC 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 757
EcoRV GATATC 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 615
EcoT38I GRGCYC 1 cut(s) 1392
ErhI CCWWGG 1 cut(s) 615
FalI AAGNNNNNCTT 2 cut(s) 1211, 1243
FaqI GGGAC 3 cut(s) 400, 506, 536
FauNDI CATATG 2 cut(s) 769, 1580
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 9 cut(s) 234, 447, 1027, 1053, 1194, 1197, 1368, 1476, 1647
FokI GGATG 6 cut(s) 37, 348, 623, 1254, 1412, 1427
FriOI GRGCYC 1 cut(s) 1392
Fsp4HI GCNGC 9 cut(s) 234, 447, 1027, 1053, 1194, 1197, 1368, 1476, 1647
FspBI CTAG 5 cut(s) 518, 548, 641, 774, 1190
GlaI GCGC 5 cut(s) 546, 1257, 1319, 1321, 1408
GluI GCNGC 9 cut(s) 234, 447, 1027, 1053, 1194, 1197, 1368, 1476, 1647
GsaI CCCAGC 1 cut(s) 1033
HaeII RGCGCY 1 cut(s) 1410
HaeIII GGCC 6 cut(s) 152, 170, 261, 657, 1399, 1467
HapII CCGG 1 cut(s) 1323
HhaI GCGC 5 cut(s) 547, 1258, 1320, 1322, 1409
Hin6I GCGC 5 cut(s) 545, 1256, 1318, 1320, 1407
HinP1I GCGC 5 cut(s) 545, 1256, 1318, 1320, 1407
HincII GTYRAC 2 cut(s) 566, 844
HindII GTYRAC 2 cut(s) 566, 844
HinfI GANTC 6 cut(s) 11, 49, 577, 611, 1115, 1685
HpaII CCGG 1 cut(s) 1323
HphI GGTGA 5 cut(s) 283, 893, 916, 976, 1426
Hpy166II GTNNAC 5 cut(s) 566, 844, 1417, 1454, 1522
Hpy188III TCNNGA 6 cut(s) 15, 508, 608, 736, 811, 857
Hpy8I GTNNAC 5 cut(s) 566, 844, 1417, 1454, 1522
HpyAV CCTTC 8 cut(s) 492, 811, 932, 955, 967, 1183, 1478, 1493
HpyCH4III ACNGT 5 cut(s) 109, 361, 684, 988, 1658
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 1396
HpyF3I CTNAG 7 cut(s) 123, 154, 172, 594, 1386, 1507, 1695
HspAI GCGC 5 cut(s) 545, 1256, 1318, 1320, 1407
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 4 cut(s) 288, 738, 853, 1512
LmnI GCTCC 1 cut(s) 1175
Lsp1109I GCAGC 8 cut(s) 220, 458, 1039, 1183, 1205, 1379, 1487, 1633
LweI GCATC 4 cut(s) 351, 1480, 1622, 1629
MaeI CTAG 5 cut(s) 518, 548, 641, 774, 1190
MaeIII GTNAC 6 cut(s) 37, 254, 608, 649, 1150, 1378
MalI GATC 4 cut(s) 290, 740, 855, 1514
MbiI CCGCTC 1 cut(s) 1010
MboI GATC 4 cut(s) 288, 738, 853, 1512
MboII GAAGA 6 cut(s) 84, 115, 496, 520, 582, 1155
MhlI GDGCHC 2 cut(s) 406, 1392
MluCI AATT 2 cut(s) 98, 708
MlyI GAGTC 2 cut(s) 605, 1694
MmeI TCCRAC 1 cut(s) 770
MseI TTAA 1 cut(s) 1529
MslI CAYNNNNRTG 2 cut(s) 227, 1579
MspA1I CMGCKG 3 cut(s) 1029, 1196, 1370
MspI CCGG 1 cut(s) 1323
MspR9I CCNGG 1 cut(s) 759
Mva1269I GAATGC 2 cut(s) 517, 913
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 1320
MwoI GCNNNNNNNGC 2 cut(s) 401, 1396
NcoI CCATGG 1 cut(s) 615
NdeI CATATG 2 cut(s) 769, 1580
NdeII GATC 4 cut(s) 288, 738, 853, 1512
NlaIV GGNNCC 2 cut(s) 67, 1263
NmuCI GTSAC 2 cut(s) 608, 1150
NspI RCATGY 1 cut(s) 799
PauI GCGCGC 1 cut(s) 1318
PceI AGGCCT 1 cut(s) 170
PctI GAATGC 2 cut(s) 517, 913
PfeI GAWTC 4 cut(s) 11, 49, 577, 1115
PkrI GCNGC 9 cut(s) 235, 448, 1028, 1054, 1195, 1198, 1369, 1477, 1648
PleI GAGTC 2 cut(s) 605, 1693
PpsI GAGTC 2 cut(s) 605, 1693
Psp124BI GAGCTC 1 cut(s) 1392
Psp6I CCWGG 1 cut(s) 757
PspFI CCCAGC 1 cut(s) 1029
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 2 cut(s) 67, 1263
PspPI GGNCC 2 cut(s) 1397, 1638
PstI CTGCAG 1 cut(s) 1369
PteI GCGCGC 1 cut(s) 1318
PvuII CAGCTG 1 cut(s) 1196
RsaI GTAC 3 cut(s) 635, 1023, 1463
RsaNI GTAC 3 cut(s) 634, 1022, 1462
RseI CAYNNNNRTG 2 cut(s) 227, 1579
SacI GAGCTC 1 cut(s) 1392
SaqAI TTAA 1 cut(s) 1529
SatI GCNGC 9 cut(s) 234, 447, 1027, 1053, 1194, 1197, 1368, 1476, 1647
Sau3AI GATC 4 cut(s) 288, 738, 853, 1512
Sau96I GGNCC 2 cut(s) 1397, 1638
SchI GAGTC 2 cut(s) 605, 1694
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 2 cut(s) 406, 1392
SfaNI GCATC 4 cut(s) 351, 1480, 1622, 1629
SfcI CTRYAG 4 cut(s) 454, 1087, 1365, 1564
SinI GGWCC 1 cut(s) 1638
SmiMI CAYNNNNRTG 2 cut(s) 227, 1579
SpeI ACTAGT 1 cut(s) 517
Sse9I AATT 2 cut(s) 98, 708
SseBI AGGCCT 1 cut(s) 170
SsiI CCGC 3 cut(s) 1008, 1027, 1370
SspMI CTAG 5 cut(s) 518, 548, 641, 774, 1190
SstI GAGCTC 1 cut(s) 1392
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 1 cut(s) 615
TaaI ACNGT 5 cut(s) 109, 361, 684, 988, 1658
TaqI TCGA 4 cut(s) 75, 279, 706, 1183
TasI AATT 2 cut(s) 98, 708
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 1029
TfiI GAWTC 4 cut(s) 11, 49, 577, 1115
Tru1I TTAA 1 cut(s) 1529
Tru9I TTAA 1 cut(s) 1529
TscAI CASTG 5 cut(s) 687, 993, 1309, 1461, 1515
TseFI GTSAC 2 cut(s) 608, 1150
TseI GCWGC 8 cut(s) 233, 446, 1052, 1193, 1196, 1367, 1475, 1646
Tsp45I GTSAC 2 cut(s) 608, 1150
TspDTI ATGAA 7 cut(s) 217, 520, 593, 831, 903, 1155, 1567
TspGWI ACGGA 1 cut(s) 1651
TspRI CASTG 5 cut(s) 687, 993, 1309, 1461, 1515
VpaK11BI GGWCC 1 cut(s) 1638
XapI RAATTY 1 cut(s) 708
XceI RCATGY 1 cut(s) 799
XspI CTAG 5 cut(s) 518, 548, 641, 774, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.