FvH4_5g24410

Nodulin-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
15771059 .. 15775396
4338 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24410.t3

Sequence Viewer

Length: 1410 bp
ATGTTTCTTCTGTGTTTGTTGGCTGGGTGTAGCATCTGTTGGTTCAACACTGTATGCTTCGTTCTTTGCATTCGGAACTTCCCAGCTAATCAACCGTTGGCAATATCACTCACAGTGAGCTTCAACGGTGTAAGTGCGGCCTTATACAACCTTGCTGCAGATGCAATTGACTCCTCTTCTACTACTATATATCTCATTTTGAATGCTGTCATTCCCCTTATCACTTCTGTAGCTGCATTGATCCCGATTCTCCGACAACCCTCTCTCGACCCCCTTCCACCTGATGGAGTTCGTCGTGACTCCGTCATTTTTCTCTTTTTGAATATCCTAGCTGTTTTAACTGGCATTTACCTTCTTCTCTTTGGTTCATCCTCTTTTGACACAGCAACTGCTCGCGTCTTCTTGGCTGGAGCCATTTTCCTACTCATTTTCCCTCTGTGTATTCCTGGCATTGTCTATGCTCGGGACTGGTTTCGTCGTGCCGTTCATTCTAACATCCGCATTGAAGGGTCAGGCTTCATTCTTGTCGATGTAGACGATCTTGAGCTTCACAAAGAGCTCCTGACCCGTGAGCCTAGTATTAATGGGAACGGATCCCTTTCTCACCTCTTGGTCTATAATGGTGCATCCGCTCAAAGTTTGTCATTTCGAAACAAAAGTATGGAGTGCACAGGGTGTTGTGGAACCCTTGTCGGAAAGGATCAATTGGCAATGCTTGGGGAAGAGCACTCGGCAAGATTGCTTGTGAGACGGTTGGATTTTTGGCTGTACTACATTGCATACTTTTGTGGGGGTACCATTGGGCTTGTTTACAGTAACAATCTTGGACAGATAGCTCAATCACTAGGGCAGAGCTCCAATACCACAACACTTGTGACTCTATATTCATCCTTCTCATTCTTTGGCCGATTGCTATCAGCTGTACCCGACTATATACGAGCGAAGTTCTATTTTGCAAGGACAGGATGGCTGACCATAGCACTTTTGCCAACCCCAGTTGCTTTTATATTGCTTGCTGCATCAAGCGGTACCATGGCTTTGCACGCTGGCACTGCACTGATCGGATTAAGCTCCGGTTTCATTTTTGCTGCTGCTGTGTCCATTACTTCAGAGTTGTTCGGGCCTAACAGCGTAGGTGTCAATCACAACATTCTCATTACAAACATACCACTCGGTTCACTAGTTTATGGTTTTCTAGCTGCAATCGTTTACGATGCCAATGTAAGCACTGGCCTCAGCATCGTAACATCTGACACAATAGTGTGCATGGGGAGGAACTGCTATTTCCTAACTTTTGTGTGGTGGGCGTGCATATCTGTACTGGGTCTAGCCTCAAGTGTGCTCTTATTCTTTAGAACTAGACATGCCTATGACCATTTTGAGCATAATCGTTCTACACAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

50.95

Weight (kDa)

7.07

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 1 - 149 6.5e-37 Nodulin-like
NFD4_C PF23262 241 - 457 1.4e-49 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 794, 1028
AccB1I GGYRCC 2 cut(s) 794, 1028
AccB7I CCANNNNNTGG 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 632
AccI GTMKAC 1 cut(s) 534
AccII CGCG 1 cut(s) 396
AciI CCGC 4 cut(s) 137, 499, 630, 1026
AclWI GGATC 4 cut(s) 235, 588, 601, 708
AcoI YGGCCR 1 cut(s) 904
AcuI CTGAAG 1 cut(s) 1092
AdeI CACNNNGTG 1 cut(s) 675
AfaI GTAC 5 cut(s) 770, 796, 924, 1030, 1320
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 5 cut(s) 46, 124, 202, 322, 506
AhlI ACTAGT 1 cut(s) 1180
AjnI CCWGG 1 cut(s) 445
AleI CACNNNNGTG 1 cut(s) 1259
Alw21I GWGCWC 5 cut(s) 561, 671, 729, 857, 1344
Alw26I GTCTC 1 cut(s) 742
Alw44I GTGCAC 1 cut(s) 667
AlwI GGATC 4 cut(s) 235, 588, 601, 708
AlwNI CAGNNNCTG 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 4 cut(s) 138, 904, 1121, 1231
ApaLI GTGCAC 1 cut(s) 667
ApeKI GCWGC 6 cut(s) 155, 233, 1016, 1088, 1091, 1199
AseI ATTAAT 1 cut(s) 582
Asp718I GGTACC 2 cut(s) 794, 1028
AspS9I GGNCC 1 cut(s) 1121
AsuHPI GGTGA 1 cut(s) 596
AsuII TTCGAA 1 cut(s) 649
AvaI CYCGRG 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 671
BamHI GGATCC 1 cut(s) 593
BanI GGYRCC 2 cut(s) 794, 1028
BanII GRGCYC 2 cut(s) 561, 857
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 5 cut(s) 561, 671, 729, 857, 1344
BbvCI CCTCAGC 1 cut(s) 1235
BbvI GCAGC 6 cut(s) 142, 220, 1003, 1075, 1078, 1186
BccI CCATC 2 cut(s) 278, 960
BceAI ACGGC 1 cut(s) 467
BciT130I CCWGG 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 742
BcuI ACTAGT 1 cut(s) 1180
BfaI CTAG 7 cut(s) 329, 576, 845, 1181, 1196, 1328, 1359
BfmI CTRYAG 2 cut(s) 156, 228
BisI GCNGC 7 cut(s) 138, 156, 234, 1017, 1089, 1092, 1200
BlsI GCNGC 7 cut(s) 139, 157, 235, 1018, 1090, 1093, 1201
Bme1390I CCNGG 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 1121
BmiI GGNNCC 5 cut(s) 412, 595, 685, 796, 1030
BmrFI CCNGG 1 cut(s) 447
BmrI ACTGGG 2 cut(s) 989, 1331
BmsI GCATC 6 cut(s) 42, 151, 635, 1028, 1204, 1248
BmuI ACTGGG 2 cut(s) 989, 1331
BpiI GAAGAC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 429
Bpu10I CCTNAGC 1 cut(s) 1235
Bpu14I TTCGAA 1 cut(s) 649
BpuEI CTTGAG 2 cut(s) 563, 1318
BsaBI GATNNNNATC 1 cut(s) 913
BsaJI CCNNGG 1 cut(s) 1032
BsaWI WCCGGW 1 cut(s) 1073
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 5 cut(s) 346, 473, 995, 1234, 1326
Bse3DI GCAATG 2 cut(s) 717, 774
Bse8I GATNNNNATC 1 cut(s) 913
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 1032
BseGI GGATG 5 cut(s) 368, 495, 626, 887, 971
BseJI GATNNNNATC 1 cut(s) 913
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 2 cut(s) 717, 774
BseMII CTCAG 1 cut(s) 1249
BseNI ACTGG 5 cut(s) 346, 473, 995, 1234, 1326
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 6 cut(s) 142, 220, 1003, 1075, 1078, 1186
BseYI CCCAGC 2 cut(s) 23, 82
BsgI GTGCAG 1 cut(s) 1038
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 4 cut(s) 140, 906, 1123, 1233
BshNI GGYRCC 2 cut(s) 794, 1028
BsiHKAI GWGCWC 5 cut(s) 561, 671, 729, 857, 1344
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 1 cut(s) 1074
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 742
BsmBI CGTCTC 1 cut(s) 742
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 2 cut(s) 69, 208
BsnI GGCC 4 cut(s) 140, 906, 1123, 1233
BsoBI CYCGRG 1 cut(s) 462
Bsp119I TTCGAA 1 cut(s) 649
Bsp1286I GDGCHC 5 cut(s) 561, 671, 729, 857, 1344
Bsp143I GATC 5 cut(s) 240, 538, 593, 700, 1059
Bsp19I CCATGG 1 cut(s) 1032
BspACI CCGC 4 cut(s) 137, 499, 630, 1026
BspANI GGCC 4 cut(s) 140, 906, 1123, 1233
BspCNI CTCAG 1 cut(s) 1248
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 5 cut(s) 412, 595, 685, 796, 1030
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 4 cut(s) 235, 588, 601, 708
BspQI GCTCTTC 1 cut(s) 717
BspT104I TTCGAA 1 cut(s) 649
BspT107I GGYRCC 2 cut(s) 794, 1028
BsrBI CCGCTC 1 cut(s) 632
BsrDI GCAATG 2 cut(s) 717, 774
BsrI ACTGG 5 cut(s) 346, 473, 995, 1234, 1326
BssECI CCNNGG 1 cut(s) 1032
BssMI GATC 5 cut(s) 240, 538, 593, 700, 1059
BssT1I CCWWGG 1 cut(s) 1032
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 7 cut(s) 52, 96, 115, 128, 753, 815, 1404
Bst6I CTCTTC 2 cut(s) 181, 717
BstBI TTCGAA 1 cut(s) 649
BstC8I GCNNGC 5 cut(s) 394, 1014, 1044, 1048, 1309
BstDEI CTNAG 1 cut(s) 1235
BstDSI CCRYGG 1 cut(s) 1032
BstF5I GGATG 5 cut(s) 368, 495, 626, 887, 971
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 5 cut(s) 243, 541, 596, 703, 1062
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 5 cut(s) 240, 538, 593, 700, 1059
BstMWI GCNNNNNNNGC 3 cut(s) 161, 1043, 1052
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 1367
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 2 cut(s) 156, 228
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 6 cut(s) 142, 220, 1003, 1075, 1078, 1186
BstV2I GAAGAC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 593
BstYI RGATCY 1 cut(s) 593
BsuRI GGCC 4 cut(s) 140, 906, 1123, 1233
BtgI CCRYGG 1 cut(s) 1032
BtsCI GGATG 5 cut(s) 368, 495, 626, 887, 971
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 5 cut(s) 48, 120, 1050, 1055, 1227
Cac8I GCNNGC 5 cut(s) 394, 1014, 1044, 1048, 1309
CaiI CAGNNNCTG 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 1121
CseI GACGC 1 cut(s) 385
Csp6I GTAC 5 cut(s) 769, 795, 923, 1029, 1319
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 3 cut(s) 1033, 1267, 1364
CviQI GTAC 5 cut(s) 769, 795, 923, 1029, 1319
DdeI CTNAG 1 cut(s) 1235
DpnI GATC 5 cut(s) 242, 540, 595, 702, 1061
DpnII GATC 5 cut(s) 240, 538, 593, 700, 1059
DraIII CACNNNGTG 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 904
Eam1104I CTCTTC 2 cut(s) 181, 717
EarI CTCTTC 2 cut(s) 181, 717
Ecl136II GAGCTC 2 cut(s) 559, 855
Eco130I CCWWGG 1 cut(s) 1032
Eco24I GRGCYC 2 cut(s) 561, 857
Eco53kI GAGCTC 2 cut(s) 559, 855
Eco57I CTGAAG 1 cut(s) 1092
Eco88I CYCGRG 1 cut(s) 462
EcoICRI GAGCTC 2 cut(s) 559, 855
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 1032
EcoT38I GRGCYC 2 cut(s) 561, 857
ErhI CCWWGG 1 cut(s) 1032
Esp3I CGTCTC 1 cut(s) 742
FaeI CATG 3 cut(s) 1036, 1270, 1367
FaqI GGGAC 1 cut(s) 479
FatI CATG 3 cut(s) 1032, 1266, 1363
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 7 cut(s) 138, 156, 234, 1017, 1089, 1092, 1200
FokI GGATG 5 cut(s) 355, 482, 613, 874, 978
FriOI GRGCYC 2 cut(s) 561, 857
Fsp4HI GCNGC 7 cut(s) 138, 156, 234, 1017, 1089, 1092, 1200
FspBI CTAG 7 cut(s) 329, 576, 845, 1181, 1196, 1328, 1359
GluI GCNGC 7 cut(s) 138, 156, 234, 1017, 1089, 1092, 1200
GsaI CCCAGC 2 cut(s) 27, 86
GsuI CTGGAG 1 cut(s) 429
HaeIII GGCC 4 cut(s) 140, 906, 1123, 1233
HapII CCGG 1 cut(s) 1074
HgaI GACGC 1 cut(s) 385
Hin1II CATG 3 cut(s) 1036, 1270, 1367
HinfI GANTC 4 cut(s) 170, 247, 299, 877
HpaII CCGG 1 cut(s) 1074
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 5 cut(s) 535, 669, 811, 1178, 1210
Hpy188I TCNGA 6 cut(s) 75, 254, 695, 1064, 1111, 1252
Hpy188III TCNNGA 6 cut(s) 244, 266, 296, 464, 542, 562
Hpy8I GTNNAC 5 cut(s) 535, 669, 811, 1178, 1210
Hpy99I CGWCG 2 cut(s) 297, 480
HpyAV CCTTC 4 cut(s) 284, 362, 500, 901
HpyCH4III ACNGT 7 cut(s) 52, 96, 115, 128, 753, 815, 1404
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 1043, 1052
HpyF3I CTNAG 1 cut(s) 1235
Hsp92II CATG 3 cut(s) 1036, 1270, 1367
KpnI GGTACC 2 cut(s) 798, 1032
Kzo9I GATC 5 cut(s) 240, 538, 593, 700, 1059
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 4 cut(s) 410, 564, 860, 1076
Lsp1109I GCAGC 6 cut(s) 142, 220, 1003, 1075, 1078, 1186
LweI GCATC 6 cut(s) 42, 151, 635, 1028, 1204, 1248
MaeI CTAG 7 cut(s) 329, 576, 845, 1181, 1196, 1328, 1359
MaeIII GTNAC 4 cut(s) 296, 815, 874, 1243
MalI GATC 5 cut(s) 242, 540, 595, 702, 1061
MbiI CCGCTC 1 cut(s) 632
MboI GATC 5 cut(s) 240, 538, 593, 700, 1059
MboII GAAGA 4 cut(s) 168, 347, 391, 734
MfeI CAATTG 2 cut(s) 165, 704
MflI RGATCY 1 cut(s) 593
MhlI GDGCHC 5 cut(s) 561, 671, 729, 857, 1344
MluCI AATT 2 cut(s) 165, 704
MlyI GAGTC 3 cut(s) 164, 293, 871
MmeI TCCRAC 3 cut(s) 277, 673, 735
MnlI CCTC 8 cut(s) 184, 271, 382, 444, 617, 1244, 1266, 1342
MseI TTAA 3 cut(s) 338, 582, 1067
MslI CAYNNNNRTG 2 cut(s) 1259, 1368
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 1 cut(s) 1074
MspR9I CCNGG 1 cut(s) 447
MunI CAATTG 2 cut(s) 165, 704
Mva1269I GAATGC 2 cut(s) 69, 208
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 3 cut(s) 161, 1043, 1052
NcoI CCATGG 1 cut(s) 1032
NdeII GATC 5 cut(s) 240, 538, 593, 700, 1059
NlaIII CATG 3 cut(s) 1036, 1270, 1367
NlaIV GGNNCC 5 cut(s) 412, 595, 685, 796, 1030
NmeAIII GCCGAG 1 cut(s) 710
NmuCI GTSAC 2 cut(s) 296, 874
NspI RCATGY 1 cut(s) 1367
NspV TTCGAA 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 1259
PciSI GCTCTTC 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 534
PctI GAATGC 2 cut(s) 69, 208
PfeI GAWTC 1 cut(s) 247
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 7 cut(s) 139, 157, 235, 1018, 1090, 1093, 1201
PleI GAGTC 3 cut(s) 164, 293, 871
PpsI GAGTC 3 cut(s) 164, 293, 871
PshBI ATTAAT 1 cut(s) 582
Psp124BI GAGCTC 2 cut(s) 561, 857
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 2 cut(s) 23, 82
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 5 cut(s) 412, 595, 685, 796, 1030
PspPI GGNCC 1 cut(s) 1121
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 1 cut(s) 593
PsyI GACNNNGTC 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 5 cut(s) 770, 796, 924, 1030, 1320
RsaNI GTAC 5 cut(s) 769, 795, 923, 1029, 1319
RseI CAYNNNNRTG 2 cut(s) 1259, 1368
SacI GAGCTC 2 cut(s) 561, 857
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 3 cut(s) 338, 582, 1067
SatI GCNGC 7 cut(s) 138, 156, 234, 1017, 1089, 1092, 1200
Sau3AI GATC 5 cut(s) 240, 538, 593, 700, 1059
Sau96I GGNCC 1 cut(s) 1121
SchI GAGTC 3 cut(s) 164, 293, 871
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 5 cut(s) 561, 671, 729, 857, 1344
SfaNI GCATC 6 cut(s) 42, 151, 635, 1028, 1204, 1248
SfcI CTRYAG 2 cut(s) 156, 228
SfuI TTCGAA 1 cut(s) 649
SmiMI CAYNNNNRTG 2 cut(s) 1259, 1368
SmlI CTYRAG 2 cut(s) 542, 1333
SmoI CTYRAG 2 cut(s) 542, 1333
SpeI ACTAGT 1 cut(s) 1180
Sse9I AATT 2 cut(s) 165, 704
SsiI CCGC 4 cut(s) 137, 499, 630, 1026
SspMI CTAG 7 cut(s) 329, 576, 845, 1181, 1196, 1328, 1359
SstI GAGCTC 2 cut(s) 561, 857
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 7 cut(s) 52, 96, 115, 128, 753, 815, 1404
TaqI TCGA 3 cut(s) 267, 528, 649
TasI AATT 2 cut(s) 165, 704
TatI WGTACW 2 cut(s) 768, 1318
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 3 cut(s) 338, 582, 1067
Tru9I TTAA 3 cut(s) 338, 582, 1067
TscAI CASTG 5 cut(s) 55, 120, 1057, 1062, 1234
TseFI GTSAC 2 cut(s) 296, 874
TseI GCWGC 6 cut(s) 155, 233, 1016, 1088, 1091, 1199
Tsp45I GTSAC 2 cut(s) 296, 874
TspDTI ATGAA 5 cut(s) 357, 476, 508, 876, 1069
TspGWI ACGGA 2 cut(s) 292, 606
TspRI CASTG 5 cut(s) 55, 120, 1057, 1062, 1234
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 667
VspI ATTAAT 1 cut(s) 582
XceI RCATGY 1 cut(s) 1367
XmiI GTMKAC 1 cut(s) 534
XspI CTAG 7 cut(s) 329, 576, 845, 1181, 1196, 1328, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.