Rmu_sc0002308.1_g000032

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002308.1
Physical Location & Seq
Forward (+)
120880 .. 125866
4987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002308.1_g000032.1.cds

Sequence Viewer

Length: 1881 bp
atgaggccacgtcgagaccactcctcctccacatcagatagacgtaacaaacccattagcattaacagctgcagcggcagccatagcaatccaaagccgccgccgccgcagcaaaaggtttcccggcgtaccagttactacaaactagcgtttctcgtgttcatggcgggtcagtcgaggaaatggatgattctggtggcgacgatttggattcaggcattcaccggaaccaacttcgatttctcgtcctactcgtcggtgttgaaatccgttctggggatttcgcaagtccagctgaattacttggccacggcctcggatttggggaaggttttcgggtggtcctccggtttggccttgatgtactttcctttgtgggttgtgctgttcatggccgccttcatggggttcgtcggttacggccttcaatggctcgtcatccgccaaatcattgtcttgccttatttcgtgatgtttcttctgtgtttgttggctgggtgtagcatctgttggttcaacacagtatgcttcgttctttgcattcggaatttcccggctaatcaacccttagcaatatcactcacagtgagcttcaacggtgtaagtgcggccttatacaacctcgctgcagatgcaattgactcctcttctacttctttatatctcattttgaatgctgtcattccccttctcacttctgtagcagcattgattccgattctccgacaaccctctctcgacccccttccacctgatggagttcgtcgtgactccatcatttttctctttttgaatatcctagctgttctaactggcatttaccttcttctctttggttcgtcctcttttgacacagcaactgctcgcgtcttcttgggtggagccgttttcctactcattttccctttgtgtattcctggcattgtctatgctcgggactggtttcgtcatgccattcactctaacatccgcattgaaggttcaggcttcattcttgtcgatgtagatgatctagagcttcacaaagagctgctgagccgtgagcctagtatttatgggaatggatcgctttctcaccttctggtcagtaatggtgcatctgctgaaagtttgtcatttcgaaacaagagtgcagagtacacagggtgttgtggaacaattgtgggaaaggatcaattggcaatgcttggagaagagcactcggcaagattgcttgtgagaaggttggatttttggctatactacattgcatacttttgtgggggtaccattggtcttgtttacagtaacaatcttggacagatagctcaatcattagggcagagctccaataccacaacacttgtgactctctattcatccttctcattctttggccggttgctgtcagctgtacccgactacatacgagcgaagttctattttgcaaggacaggatggctaaccatagcacttttgccaaccccagttgctttcacattgcttgctgcatcaggcagtaccatggctttgcacgctggcactgcactgatcggattgagctctggtttcatttttgctgctgctgtttccattacatcagagttgttcgggcctaacagcgtaggtgtcaatcacaacattctgattacaaacataccactcggttcacttgtttatggttttctagctgcaattgtttacgatgccaatgtaagcactggcctcaacatcttaacagctgatacaatagtgtgcatggggaggaactgctattttctaacatttgtgtggtgggcgtgcatatctgttttggggctggcgtcaagtgtgctcttattcttaagaactagacatgcctatgaccatttcgagcataatcgctctacgcaactgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

626

Amino Acids

68.59

Weight (kDa)

8.94

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1265
AccB1I GGYRCC 1 cut(s) 1265
AccB7I CCANNNNNTGG 1 cut(s) 755
AccII CGCG 1 cut(s) 867
AclWI GGATC 2 cut(s) 1072, 1179
AcoI YGGCCR 3 cut(s) 306, 393, 1375
AcsI RAATTY 1 cut(s) 547
AcyI GRCGYC 1 cut(s) 1802
AdeI CACNNNGTG 1 cut(s) 1146
AfaI GTAC 6 cut(s) 130, 365, 1139, 1267, 1395, 1501
AfiI CCNNNNNNNGG 3 cut(s) 276, 405, 755
AflII CTTAAG 1 cut(s) 1822
AgsI TTSAA 7 cut(s) 265, 428, 517, 595, 673, 793, 977
AjiI CACGTC 1 cut(s) 11
AjnI CCWGG 1 cut(s) 916
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
Alw21I GWGCWC 4 cut(s) 1200, 1328, 1544, 1815
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 2 cut(s) 1072, 1179
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 933
ApoI RAATTY 1 cut(s) 547
Asp700I GAANNNNTTC 1 cut(s) 332
Asp718I GGTACC 1 cut(s) 1265
AspS9I GGNCC 2 cut(s) 342, 1592
AsuC2I CCSGG 2 cut(s) 124, 554
AsuHPI GGTGA 2 cut(s) 214, 1067
AsuII TTCGAA 1 cut(s) 1120
AvaI CYCGRG 1 cut(s) 933
AvaII GGWCC 1 cut(s) 342
BaeI ACNNNNGTAYC 2 cut(s) 1716, 1749
BalI TGGCCA 1 cut(s) 308
BanI GGYRCC 1 cut(s) 1265
BanII GRGCYC 2 cut(s) 1328, 1544
BauI CACGAG 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 862
Bbv12I GWGCWC 4 cut(s) 1200, 1328, 1544, 1815
BccI CCATC 3 cut(s) 749, 782, 1431
BceAI ACGGC 4 cut(s) 327, 436, 869, 1023
BciT130I CCWGG 1 cut(s) 918
BcnI CCSGG 2 cut(s) 124, 554
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 6 cut(s) 146, 800, 1013, 1047, 1667, 1830
BfmI CTRYAG 3 cut(s) 70, 627, 699
BfrI CTTAAG 1 cut(s) 1822
BlpI GCTNAGC 1 cut(s) 1034
Bme1390I CCNGG 3 cut(s) 124, 554, 918
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 933
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 342, 1592
BmiI GGNNCC 3 cut(s) 229, 883, 1267
BmrFI CCNGG 3 cut(s) 124, 554, 918
BmrI ACTGGG 1 cut(s) 1460
BmsI GCATC 5 cut(s) 513, 622, 1106, 1499, 1675
BmuI ACTGGG 1 cut(s) 1460
BpiI GAAGAC 1 cut(s) 862
Bpu10I CCTNAGC 1 cut(s) 568
Bpu1102I GCTNAGC 1 cut(s) 1034
Bpu14I TTCGAA 1 cut(s) 1120
BpuMI CCSGG 2 cut(s) 124, 554
BsaHI GRCGYC 1 cut(s) 1802
BsaI GGTCTC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 309, 315, 1503
BsaWI WCCGGW 2 cut(s) 224, 347
BsaXI ACNNNNNCTCC 4 cut(s) 8, 11, 38, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 405, 755
Bse118I RCCGGY 1 cut(s) 1377
Bse1I ACTGG 5 cut(s) 132, 817, 944, 1466, 1705
Bse3DI GCAATG 3 cut(s) 1188, 1245, 1478
BseBI CCWGG 1 cut(s) 918
BseDI CCNNGG 3 cut(s) 309, 315, 1503
BseGI GGATG 5 cut(s) 192, 438, 966, 1358, 1442
BseLI CCNNNNNNNGG 3 cut(s) 276, 405, 755
BseMI GCAATG 3 cut(s) 1188, 1245, 1478
BseMII CTCAG 1 cut(s) 1025
BseNI ACTGG 5 cut(s) 132, 817, 944, 1466, 1705
BseRI GAGGAG 3 cut(s) 13, 16, 634
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 2 cut(s) 1152, 1509
Bsh1236I CGCG 1 cut(s) 867
BshNI GGYRCC 1 cut(s) 1265
BsiHKAI GWGCWC 4 cut(s) 1200, 1328, 1544, 1815
BsiHKCI CYCGRG 1 cut(s) 933
BsiSI CCGG 5 cut(s) 124, 225, 348, 554, 1378
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 3 cut(s) 276, 405, 755
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 950
BsmI GAATGC 3 cut(s) 218, 540, 679
Bso31I GGTCTC 1 cut(s) 9
BsoBI CYCGRG 1 cut(s) 933
Bsp119I TTCGAA 1 cut(s) 1120
Bsp1286I GDGCHC 4 cut(s) 1200, 1328, 1544, 1815
Bsp143I GATC 4 cut(s) 1009, 1064, 1171, 1530
Bsp1720I GCTNAGC 1 cut(s) 1034
Bsp19I CCATGG 1 cut(s) 1503
BspCNI CTCAG 1 cut(s) 1026
BspFNI CGCG 1 cut(s) 867
BspLI GGNNCC 3 cut(s) 229, 883, 1267
BspMAI CTGCAG 2 cut(s) 74, 631
BspPI GGATC 2 cut(s) 1072, 1179
BspQI GCTCTTC 1 cut(s) 1188
BspT104I TTCGAA 1 cut(s) 1120
BspT107I GGYRCC 1 cut(s) 1265
BspTI CTTAAG 1 cut(s) 1822
BspTNI GGTCTC 1 cut(s) 9
BsrDI GCAATG 3 cut(s) 1188, 1245, 1478
BsrFI RCCGGY 1 cut(s) 1377
BsrI ACTGG 5 cut(s) 132, 817, 944, 1466, 1705
BssAI RCCGGY 1 cut(s) 1377
BssECI CCNNGG 3 cut(s) 309, 315, 1503
BssMI GATC 4 cut(s) 1009, 1064, 1171, 1530
BssNI GRCGYC 1 cut(s) 1802
BssSI CACGAG 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 1503
Bst2BI CACGAG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 918
Bst4CI ACNGT 5 cut(s) 523, 586, 599, 1286, 1875
Bst6I CTCTTC 2 cut(s) 652, 1188
BstACI GRCGYC 1 cut(s) 1802
BstAFI CTTAAG 1 cut(s) 1822
BstBI TTCGAA 1 cut(s) 1120
BstC8I GCNNGC 6 cut(s) 865, 1485, 1515, 1519, 1780, 1800
BstDEI CTNAG 2 cut(s) 568, 1034
BstDSI CCRYGG 2 cut(s) 309, 1503
BstF5I GGATG 5 cut(s) 192, 438, 966, 1358, 1442
BstFNI CGCG 1 cut(s) 867
BstKTI GATC 4 cut(s) 1012, 1067, 1174, 1533
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 1009, 1064, 1171, 1530
BstNI CCWGG 1 cut(s) 918
BstNSI RCATGY 1 cut(s) 1838
BstSCI CCNGG 3 cut(s) 122, 552, 916
BstSFI CTRYAG 3 cut(s) 70, 627, 699
BstUI CGCG 1 cut(s) 867
BstV2I GAAGAC 1 cut(s) 862
BtgI CCRYGG 2 cut(s) 309, 1503
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 5 cut(s) 192, 438, 966, 1358, 1442
BtsI GCAGTG 1 cut(s) 1521
BtsIMutI CAGTG 4 cut(s) 591, 1521, 1526, 1698
Cac8I GCNNGC 6 cut(s) 865, 1485, 1515, 1519, 1780, 1800
CaiI CAGNNNCTG 1 cut(s) 860
Cfr10I RCCGGY 1 cut(s) 1377
Cfr13I GGNCC 2 cut(s) 342, 1592
CseI GACGC 2 cut(s) 856, 1791
Csp6I GTAC 6 cut(s) 129, 364, 1138, 1266, 1394, 1500
CspCI CAANNNNNGTGG 2 cut(s) 1324, 1359
CviAII CATG 7 cut(s) 163, 391, 403, 950, 1504, 1738, 1835
CviQI GTAC 6 cut(s) 129, 364, 1138, 1266, 1394, 1500
DdeI CTNAG 2 cut(s) 568, 1034
DpnI GATC 4 cut(s) 1011, 1066, 1173, 1532
DpnII GATC 4 cut(s) 1009, 1064, 1171, 1530
DraIII CACNNNGTG 1 cut(s) 1146
EaeI YGGCCR 3 cut(s) 306, 393, 1375
Eam1104I CTCTTC 2 cut(s) 652, 1188
EarI CTCTTC 2 cut(s) 652, 1188
EciI GGCGGA 1 cut(s) 431
Ecl136II GAGCTC 2 cut(s) 1326, 1542
Eco130I CCWWGG 1 cut(s) 1503
Eco24I GRGCYC 2 cut(s) 1328, 1544
Eco31I GGTCTC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 342
Eco53kI GAGCTC 2 cut(s) 1326, 1542
Eco88I CYCGRG 1 cut(s) 933
EcoICRI GAGCTC 2 cut(s) 1326, 1542
EcoRII CCWGG 1 cut(s) 916
EcoT14I CCWWGG 1 cut(s) 1503
EcoT38I GRGCYC 2 cut(s) 1328, 1544
ErhI CCWWGG 1 cut(s) 1503
FaeI CATG 7 cut(s) 166, 394, 406, 953, 1507, 1741, 1838
FaqI GGGAC 1 cut(s) 950
FatI CATG 7 cut(s) 162, 390, 402, 949, 1503, 1737, 1834
FauI CCCGC 1 cut(s) 160
FokI GGATG 5 cut(s) 199, 425, 953, 1345, 1449
FriOI GRGCYC 2 cut(s) 1328, 1544
FspBI CTAG 6 cut(s) 146, 800, 1013, 1047, 1667, 1830
GsaI CCCAGC 1 cut(s) 498
HapII CCGG 5 cut(s) 124, 225, 348, 554, 1378
HgaI GACGC 2 cut(s) 856, 1791
Hin1I GRCGYC 1 cut(s) 1802
Hin1II CATG 7 cut(s) 166, 394, 406, 953, 1507, 1741, 1838
HinfI GANTC 7 cut(s) 190, 211, 641, 712, 718, 770, 1348
HpaII CCGG 5 cut(s) 124, 225, 348, 554, 1378
HphI GGTGA 2 cut(s) 214, 1067
Hpy166II GTNNAC 4 cut(s) 1140, 1282, 1649, 1681
Hpy188I TCNGA 8 cut(s) 37, 319, 546, 717, 725, 1535, 1582, 1626
Hpy188III TCNNGA 6 cut(s) 14, 469, 737, 767, 935, 1013
Hpy8I GTNNAC 4 cut(s) 1140, 1282, 1649, 1681
Hpy99I CGWCG 5 cut(s) 15, 205, 259, 416, 768
HpyCH4III ACNGT 5 cut(s) 523, 586, 599, 1286, 1875
HpyCH4IV ACGT 2 cut(s) 10, 43
HpyF3I CTNAG 2 cut(s) 568, 1034
HpySE526I ACGT 2 cut(s) 10, 43
Hsp92I GRCGYC 1 cut(s) 1802
Hsp92II CATG 7 cut(s) 166, 394, 406, 953, 1507, 1741, 1838
KpnI GGTACC 1 cut(s) 1269
Kzo9I GATC 4 cut(s) 1009, 1064, 1171, 1530
LguI GCTCTTC 1 cut(s) 1188
LmnI GCTCC 2 cut(s) 881, 1331
LweI GCATC 5 cut(s) 513, 622, 1106, 1499, 1675
MaeI CTAG 6 cut(s) 146, 800, 1013, 1047, 1667, 1830
MaeII ACGT 2 cut(s) 10, 43
MaeIII GTNAC 6 cut(s) 44, 134, 416, 767, 1286, 1345
MalI GATC 4 cut(s) 1011, 1066, 1173, 1532
MboI GATC 4 cut(s) 1009, 1064, 1171, 1530
MboII GAAGA 5 cut(s) 470, 639, 818, 862, 1205
MfeI CAATTG 4 cut(s) 636, 1158, 1175, 1674
MhlI GDGCHC 4 cut(s) 1200, 1328, 1544, 1815
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 6 cut(s) 298, 547, 636, 1158, 1175, 1674
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 3 cut(s) 635, 764, 1342
MmeI TCCRAC 2 cut(s) 748, 1206
Mox20I TGGCCA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 332
MscI TGGCCA 1 cut(s) 308
MseI TTAA 3 cut(s) 63, 1715, 1823
MslI CAYNNNNRTG 2 cut(s) 1768, 1839
Msp20I TGGCCA 1 cut(s) 308
MspA1I CMGCKG 5 cut(s) 69, 75, 295, 1391, 1721
MspCI CTTAAG 1 cut(s) 1822
MspI CCGG 5 cut(s) 124, 225, 348, 554, 1378
MspR9I CCNGG 3 cut(s) 124, 554, 918
MunI CAATTG 4 cut(s) 636, 1158, 1175, 1674
Mva1269I GAATGC 3 cut(s) 218, 540, 679
MvaI CCWGG 1 cut(s) 918
MvnI CGCG 1 cut(s) 867
NciI CCSGG 2 cut(s) 124, 554
NcoI CCATGG 1 cut(s) 1503
NdeII GATC 4 cut(s) 1009, 1064, 1171, 1530
NlaIII CATG 7 cut(s) 166, 394, 406, 953, 1507, 1741, 1838
NlaIV GGNNCC 3 cut(s) 229, 883, 1267
NmeAIII GCCGAG 1 cut(s) 1181
NmuCI GTSAC 2 cut(s) 767, 1345
NspI RCATGY 1 cut(s) 1838
NspV TTCGAA 1 cut(s) 1120
PciSI GCTCTTC 1 cut(s) 1188
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PctI GAATGC 3 cut(s) 218, 540, 679
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 4 cut(s) 190, 211, 712, 718
PflMI CCANNNNNTGG 1 cut(s) 755
PleI GAGTC 3 cut(s) 635, 764, 1342
PpsI GAGTC 3 cut(s) 635, 764, 1342
Psp124BI GAGCTC 2 cut(s) 1328, 1544
Psp6I CCWGG 1 cut(s) 916
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 916
PspN4I GGNNCC 3 cut(s) 229, 883, 1267
PspPI GGNCC 2 cut(s) 342, 1592
PsrI GAACNNNNNNTAC 2 cut(s) 516, 548
PstI CTGCAG 2 cut(s) 74, 631
PstNI CAGNNNCTG 1 cut(s) 860
PvuII CAGCTG 4 cut(s) 69, 295, 1391, 1721
RsaI GTAC 6 cut(s) 130, 365, 1139, 1267, 1395, 1501
RsaNI GTAC 6 cut(s) 129, 364, 1138, 1266, 1394, 1500
RseI CAYNNNNRTG 2 cut(s) 1768, 1839
SacI GAGCTC 2 cut(s) 1328, 1544
SapI GCTCTTC 1 cut(s) 1188
SaqAI TTAA 3 cut(s) 63, 1715, 1823
Sau3AI GATC 4 cut(s) 1009, 1064, 1171, 1530
Sau96I GGNCC 2 cut(s) 342, 1592
SchI GAGTC 3 cut(s) 635, 764, 1342
ScrFI CCNGG 3 cut(s) 124, 554, 918
SduI GDGCHC 4 cut(s) 1200, 1328, 1544, 1815
SfaNI GCATC 5 cut(s) 513, 622, 1106, 1499, 1675
SfcI CTRYAG 3 cut(s) 70, 627, 699
SfuI TTCGAA 1 cut(s) 1120
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 1768, 1839
SmlI CTYRAG 1 cut(s) 1822
SmoI CTYRAG 1 cut(s) 1822
Sse9I AATT 6 cut(s) 298, 547, 636, 1158, 1175, 1674
SspMI CTAG 6 cut(s) 146, 800, 1013, 1047, 1667, 1830
SstI GAGCTC 2 cut(s) 1328, 1544
StyD4I CCNGG 3 cut(s) 122, 552, 916
StyI CCWWGG 1 cut(s) 1503
TaaI ACNGT 5 cut(s) 523, 586, 599, 1286, 1875
TaiI ACGT 2 cut(s) 13, 46
TaqI TCGA 7 cut(s) 13, 176, 237, 738, 999, 1120, 1851
TasI AATT 6 cut(s) 298, 547, 636, 1158, 1175, 1674
TatI WGTACW 2 cut(s) 363, 1137
TauI GCSGC 7 cut(s) 78, 100, 103, 106, 109, 398, 611
TfiI GAWTC 4 cut(s) 190, 211, 712, 718
Tru1I TTAA 3 cut(s) 63, 1715, 1823
Tru9I TTAA 3 cut(s) 63, 1715, 1823
TscAI CASTG 4 cut(s) 591, 1528, 1533, 1705
TseFI GTSAC 2 cut(s) 767, 1345
Tsp45I GTSAC 2 cut(s) 767, 1345
TspDTI ATGAA 6 cut(s) 151, 379, 391, 979, 1347, 1540
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 4 cut(s) 591, 1528, 1533, 1705
Van91I CCANNNNNTGG 1 cut(s) 755
Vha464I CTTAAG 1 cut(s) 1822
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 1 cut(s) 547
XbaI TCTAGA 1 cut(s) 1012
XceI RCATGY 1 cut(s) 1838
XmnI GAANNNNTTC 1 cut(s) 332
XspI CTAG 6 cut(s) 146, 800, 1013, 1047, 1667, 1830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.