Rh7DG287500

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
32156957 .. 32163190
6234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG287500.1

Sequence Viewer

Length: 1452 bp
ATGATAATTTGTTTTTCTTGGTATGACTTTCATGGCCTGCAGATGTTTCTTCTGTGTTTGTTGGCTGGGTGTAGCATCTGTTGGTTCAACACAGTATGCTTCGTTCTTTGCATTCGGAATTTTCCGGCTAATCAACCCTTAGCAATATCACTCACAGTGAGCTTCAACGGTGTAAGTGCGGCCTTATACAACCTCGCTGCAGATGCAATTGACTCCTCTTCTACTTCTTTATATCTCATTTTGAATGCTGTCATTCCCCTTCTCACTTCTGTAGCAGCATTGATTCCGATTCTCCGACAACCCTCTCTCGACCCCCTTCCACCTGATGGAGTTCGTCGTGACTCCGTCATTTTTCTCTTTTTGAATATCCTAGCTGTTCTAACTGGCATTTACCTTCTTCTCTTTGGTTCGTCCTCTTTTGACACAGCAACTGCTCGCGTCTTCTTGGGTGGAGCCGTTTTCCTACTCATTTTCCCTTTGTGTATTCCTGGCATTGTCTATGCTCGGGACTGGTTTCGTCATGCCATTCACTCTAACATCCGCATTGAAGGTTCAGGCTTCATTCTTGTCGATGTAGATGATCTAGAGCTTCACAAAGAGCTGCTGAGCCGCGAGCCTAGTATTTATGGGAATGGATCGCTTTCTCACCTTCTGGTCAGTAATGGTGCATCTGCTGAAAGTTTGTCATTTCGAAACAAGAGTGCAGAGTACACAGGGTGTTGTGGAACAATTGTGGGAAAGGATCAATTGGCAATGCTTGGAGAAGAGCACTCGGCAAGATTGCTTGTGAGAAGGTTGGATTTTTGGCTATACTACATTGCATACTTTTGTGGGGGTACCATTGGTCTTGTTTACAGTAACAATCTTGGACAGATAGCTCAATCATTAGGGCAGAGCTCCAATACCACAACACTTGTGACTCTCTATTCATCCTTCTCATTCTTTGGCCGGTTGCTATCAGCTGTACCCGACTACATACGAGCGAAGTTCTATTTTGCAAGGACAGGATGTCTAACCATAGCACTTTTGCCAACCCCAGTTGCTTTCACATTGCTTGCTGCATCAGGCAGTACCATGGCTTTGCACGCTGGCACTGCACTGATCGGATTGAGCTCTGGTTTCATTTTTGCTGCTGCTGTTTCCATTACATCAGAGTTGTTCGGGCCTAACAGCGTAGGTGTCAATCACAACATTCTGATTACAAACATACCACTCGGTTCACTTGTGTATGGTTTTCTAGCTGCAATTGTTTACGATGCCAATGTAAGCACTGGCCTCAACATCTTAACAGCTGATACAATAGTGTGCATGGGGAGGAACTGCTATTTTCTAACATTTGTGTGGTGGGCGTGCATATCTGTTTTGGGGCTGGCGTCAAGTGTGCTCTTATTCTTAAGAACTAGACATGCCTATGACCATTTCGAGCATAATCGCTCTACGCAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

52.5

Weight (kDa)

6.4

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 13 - 163 1.4e-37 Nodulin-like
NFD4_C PF23262 255 - 471 9.2e-50 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 836
AccB7I CCANNNNNTGG 1 cut(s) 326
AccII CGCG 2 cut(s) 438, 612
AciI CCGC 3 cut(s) 179, 541, 610
AclWI GGATC 2 cut(s) 643, 750
AcoI YGGCCR 1 cut(s) 946
AcsI RAATTY 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 1373
AdeI CACNNNGTG 1 cut(s) 717
AfaI GTAC 4 cut(s) 710, 838, 966, 1072
AfiI CCNNNNNNNGG 1 cut(s) 326
AflII CTTAAG 1 cut(s) 1393
AgsI TTSAA 5 cut(s) 88, 166, 244, 364, 548
AhdI GACNNNNNGTC 1 cut(s) 1008
AjnI CCWGG 1 cut(s) 487
Alw21I GWGCWC 4 cut(s) 771, 899, 1115, 1386
AlwI GGATC 2 cut(s) 643, 750
AlwNI CAGNNNCTG 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 5 cut(s) 34, 180, 946, 1163, 1273
ApeKI GCWGC 7 cut(s) 197, 275, 601, 1058, 1130, 1133, 1241
ApoI RAATTY 1 cut(s) 118
Asp718I GGTACC 1 cut(s) 836
AspS9I GGNCC 1 cut(s) 1163
AsuHPI GGTGA 1 cut(s) 638
AsuII TTCGAA 1 cut(s) 691
AvaI CYCGRG 1 cut(s) 504
BaeI ACNNNNGTAYC 2 cut(s) 1287, 1320
BanI GGYRCC 1 cut(s) 836
BanII GRGCYC 2 cut(s) 899, 1115
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 4 cut(s) 771, 899, 1115, 1386
BbvI GCAGC 7 cut(s) 184, 287, 588, 1045, 1117, 1120, 1228
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 440
BciT130I CCWGG 1 cut(s) 489
BfaI CTAG 5 cut(s) 371, 584, 618, 1238, 1401
BfmI CTRYAG 3 cut(s) 38, 198, 270
BfrI CTTAAG 1 cut(s) 1393
BisI GCNGC 9 cut(s) 180, 198, 276, 602, 610, 1059, 1131, 1134, 1242
BlpI GCTNAGC 1 cut(s) 605
BlsI GCNGC 9 cut(s) 181, 199, 277, 603, 611, 1060, 1132, 1135, 1243
Bme1390I CCNGG 1 cut(s) 489
BmeRI GACNNNNNGTC 1 cut(s) 1008
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 1163
BmiI GGNNCC 2 cut(s) 454, 838
BmrFI CCNGG 1 cut(s) 489
BmrI ACTGGG 1 cut(s) 1031
BmsI GCATC 5 cut(s) 84, 193, 677, 1070, 1246
BmuI ACTGGG 1 cut(s) 1031
BpiI GAAGAC 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 139
Bpu1102I GCTNAGC 1 cut(s) 605
Bpu14I TTCGAA 1 cut(s) 691
BsaHI GRCGYC 1 cut(s) 1373
BsaJI CCNNGG 1 cut(s) 1074
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse118I RCCGGY 1 cut(s) 948
Bse1I ACTGG 4 cut(s) 388, 515, 1037, 1276
Bse3DI GCAATG 3 cut(s) 759, 816, 1049
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 1074
BseGI GGATG 3 cut(s) 537, 929, 1013
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 3 cut(s) 759, 816, 1049
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 4 cut(s) 388, 515, 1037, 1276
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 7 cut(s) 184, 287, 588, 1045, 1117, 1120, 1228
BseYI CCCAGC 1 cut(s) 65
BsgI GTGCAG 2 cut(s) 723, 1080
Bsh1236I CGCG 2 cut(s) 438, 612
BshFI GGCC 5 cut(s) 36, 182, 948, 1165, 1275
BshNI GGYRCC 1 cut(s) 836
BsiHKAI GWGCWC 4 cut(s) 771, 899, 1115, 1386
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 2 cut(s) 125, 949
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 521
BsmI GAATGC 2 cut(s) 111, 250
BsnI GGCC 5 cut(s) 36, 182, 948, 1165, 1275
BsoBI CYCGRG 1 cut(s) 504
Bsp119I TTCGAA 1 cut(s) 691
Bsp1286I GDGCHC 4 cut(s) 771, 899, 1115, 1386
Bsp143I GATC 4 cut(s) 580, 635, 742, 1101
Bsp1720I GCTNAGC 1 cut(s) 605
Bsp19I CCATGG 1 cut(s) 1074
BspACI CCGC 3 cut(s) 179, 541, 610
BspANI GGCC 5 cut(s) 36, 182, 948, 1165, 1275
BspCNI CTCAG 1 cut(s) 597
BspFNI CGCG 2 cut(s) 438, 612
BspLI GGNNCC 2 cut(s) 454, 838
BspMAI CTGCAG 2 cut(s) 42, 202
BspPI GGATC 2 cut(s) 643, 750
BspQI GCTCTTC 1 cut(s) 759
BspT104I TTCGAA 1 cut(s) 691
BspT107I GGYRCC 1 cut(s) 836
BspTI CTTAAG 1 cut(s) 1393
BsrDI GCAATG 3 cut(s) 759, 816, 1049
BsrFI RCCGGY 1 cut(s) 948
BsrI ACTGG 4 cut(s) 388, 515, 1037, 1276
BssAI RCCGGY 1 cut(s) 948
BssECI CCNNGG 1 cut(s) 1074
BssMI GATC 4 cut(s) 580, 635, 742, 1101
BssNI GRCGYC 1 cut(s) 1373
BssT1I CCWWGG 1 cut(s) 1074
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 5 cut(s) 94, 157, 170, 857, 1446
Bst6I CTCTTC 2 cut(s) 223, 759
BstACI GRCGYC 1 cut(s) 1373
BstAFI CTTAAG 1 cut(s) 1393
BstBI TTCGAA 1 cut(s) 691
BstC8I GCNNGC 8 cut(s) 38, 436, 614, 1056, 1086, 1090, 1351, 1371
BstDEI CTNAG 2 cut(s) 139, 605
BstDSI CCRYGG 1 cut(s) 1074
BstF5I GGATG 3 cut(s) 537, 929, 1013
BstFNI CGCG 2 cut(s) 438, 612
BstKTI GATC 4 cut(s) 583, 638, 745, 1104
BstMBI GATC 4 cut(s) 580, 635, 742, 1101
BstMWI GCNNNNNNNGC 3 cut(s) 203, 1085, 1094
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 1409
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 3 cut(s) 38, 198, 270
BstUI CGCG 2 cut(s) 438, 612
BstV1I GCAGC 7 cut(s) 184, 287, 588, 1045, 1117, 1120, 1228
BstV2I GAAGAC 1 cut(s) 433
BsuRI GGCC 5 cut(s) 36, 182, 948, 1165, 1275
BtgI CCRYGG 1 cut(s) 1074
BtsCI GGATG 3 cut(s) 537, 929, 1013
BtsI GCAGTG 1 cut(s) 1092
BtsIMutI CAGTG 4 cut(s) 162, 1092, 1097, 1269
Cac8I GCNNGC 8 cut(s) 38, 436, 614, 1056, 1086, 1090, 1351, 1371
CaiI CAGNNNCTG 1 cut(s) 431
Cfr10I RCCGGY 1 cut(s) 948
Cfr13I GGNCC 1 cut(s) 1163
CseI GACGC 2 cut(s) 427, 1362
Csp6I GTAC 4 cut(s) 709, 837, 965, 1071
CspCI CAANNNNNGTGG 2 cut(s) 895, 930
CviAII CATG 5 cut(s) 32, 521, 1075, 1309, 1406
CviQI GTAC 4 cut(s) 709, 837, 965, 1071
DdeI CTNAG 2 cut(s) 139, 605
DpnI GATC 4 cut(s) 582, 637, 744, 1103
DpnII GATC 4 cut(s) 580, 635, 742, 1101
DraIII CACNNNGTG 1 cut(s) 717
DriI GACNNNNNGTC 1 cut(s) 1008
EaeI YGGCCR 1 cut(s) 946
Eam1104I CTCTTC 2 cut(s) 223, 759
Eam1105I GACNNNNNGTC 1 cut(s) 1008
EarI CTCTTC 2 cut(s) 223, 759
Ecl136II GAGCTC 2 cut(s) 897, 1113
Eco130I CCWWGG 1 cut(s) 1074
Eco24I GRGCYC 2 cut(s) 899, 1115
Eco53kI GAGCTC 2 cut(s) 897, 1113
Eco88I CYCGRG 1 cut(s) 504
EcoICRI GAGCTC 2 cut(s) 897, 1113
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 1074
EcoT38I GRGCYC 2 cut(s) 899, 1115
ErhI CCWWGG 1 cut(s) 1074
FaeI CATG 5 cut(s) 35, 524, 1078, 1312, 1409
FaqI GGGAC 1 cut(s) 521
FatI CATG 5 cut(s) 31, 520, 1074, 1308, 1405
Fnu4HI GCNGC 9 cut(s) 180, 198, 276, 602, 610, 1059, 1131, 1134, 1242
FokI GGATG 3 cut(s) 524, 916, 1020
FriOI GRGCYC 2 cut(s) 899, 1115
Fsp4HI GCNGC 9 cut(s) 180, 198, 276, 602, 610, 1059, 1131, 1134, 1242
FspBI CTAG 5 cut(s) 371, 584, 618, 1238, 1401
GluI GCNGC 9 cut(s) 180, 198, 276, 602, 610, 1059, 1131, 1134, 1242
GsaI CCCAGC 1 cut(s) 69
HaeIII GGCC 5 cut(s) 36, 182, 948, 1165, 1275
HapII CCGG 2 cut(s) 125, 949
HgaI GACGC 2 cut(s) 427, 1362
Hin1I GRCGYC 1 cut(s) 1373
Hin1II CATG 5 cut(s) 35, 524, 1078, 1312, 1409
HinfI GANTC 5 cut(s) 212, 283, 289, 341, 919
HpaII CCGG 2 cut(s) 125, 949
HphI GGTGA 1 cut(s) 638
Hpy166II GTNNAC 4 cut(s) 711, 853, 1220, 1252
Hpy188I TCNGA 6 cut(s) 117, 288, 296, 1106, 1153, 1197
Hpy188III TCNNGA 4 cut(s) 308, 338, 506, 584
Hpy8I GTNNAC 4 cut(s) 711, 853, 1220, 1252
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 7 cut(s) 269, 326, 404, 542, 659, 786, 943
HpyCH4III ACNGT 5 cut(s) 94, 157, 170, 857, 1446
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 1085, 1094
HpyF3I CTNAG 2 cut(s) 139, 605
Hsp92I GRCGYC 1 cut(s) 1373
Hsp92II CATG 5 cut(s) 35, 524, 1078, 1312, 1409
KpnI GGTACC 1 cut(s) 840
Kzo9I GATC 4 cut(s) 580, 635, 742, 1101
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 2 cut(s) 452, 902
Lsp1109I GCAGC 7 cut(s) 184, 287, 588, 1045, 1117, 1120, 1228
LweI GCATC 5 cut(s) 84, 193, 677, 1070, 1246
MaeI CTAG 5 cut(s) 371, 584, 618, 1238, 1401
MaeIII GTNAC 3 cut(s) 338, 857, 916
MalI GATC 4 cut(s) 582, 637, 744, 1103
MboI GATC 4 cut(s) 580, 635, 742, 1101
MboII GAAGA 5 cut(s) 41, 210, 389, 433, 776
MfeI CAATTG 4 cut(s) 207, 729, 746, 1245
MhlI GDGCHC 4 cut(s) 771, 899, 1115, 1386
MluCI AATT 6 cut(s) 6, 118, 207, 729, 746, 1245
MlyI GAGTC 3 cut(s) 206, 335, 913
MmeI TCCRAC 2 cut(s) 319, 777
MnlI CCTC 6 cut(s) 203, 226, 313, 424, 1286, 1308
MseI TTAA 2 cut(s) 1286, 1394
MslI CAYNNNNRTG 2 cut(s) 1339, 1410
MspA1I CMGCKG 2 cut(s) 962, 1292
MspCI CTTAAG 1 cut(s) 1393
MspI CCGG 2 cut(s) 125, 949
MspR9I CCNGG 1 cut(s) 489
MunI CAATTG 4 cut(s) 207, 729, 746, 1245
Mva1269I GAATGC 2 cut(s) 111, 250
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 2 cut(s) 438, 612
MwoI GCNNNNNNNGC 3 cut(s) 203, 1085, 1094
NcoI CCATGG 1 cut(s) 1074
NdeII GATC 4 cut(s) 580, 635, 742, 1101
NlaIII CATG 5 cut(s) 35, 524, 1078, 1312, 1409
NlaIV GGNNCC 2 cut(s) 454, 838
NmeAIII GCCGAG 1 cut(s) 752
NmuCI GTSAC 2 cut(s) 338, 916
NspI RCATGY 1 cut(s) 1409
NspV TTCGAA 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 759
PctI GAATGC 2 cut(s) 111, 250
PfeI GAWTC 2 cut(s) 283, 289
PflFI GACNNNGTC 1 cut(s) 344
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 9 cut(s) 181, 199, 277, 603, 611, 1060, 1132, 1135, 1243
PleI GAGTC 3 cut(s) 206, 335, 913
PpsI GAGTC 3 cut(s) 206, 335, 913
Psp124BI GAGCTC 2 cut(s) 899, 1115
Psp6I CCWGG 1 cut(s) 487
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 2 cut(s) 454, 838
PspPI GGNCC 1 cut(s) 1163
PsrI GAACNNNNNNTAC 2 cut(s) 87, 119
PstI CTGCAG 2 cut(s) 42, 202
PstNI CAGNNNCTG 1 cut(s) 431
PsyI GACNNNGTC 1 cut(s) 344
PvuII CAGCTG 2 cut(s) 962, 1292
RsaI GTAC 4 cut(s) 710, 838, 966, 1072
RsaNI GTAC 4 cut(s) 709, 837, 965, 1071
RseI CAYNNNNRTG 2 cut(s) 1339, 1410
SacI GAGCTC 2 cut(s) 899, 1115
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 2 cut(s) 1286, 1394
SatI GCNGC 9 cut(s) 180, 198, 276, 602, 610, 1059, 1131, 1134, 1242
Sau3AI GATC 4 cut(s) 580, 635, 742, 1101
Sau96I GGNCC 1 cut(s) 1163
SchI GAGTC 3 cut(s) 206, 335, 913
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 4 cut(s) 771, 899, 1115, 1386
SfaNI GCATC 5 cut(s) 84, 193, 677, 1070, 1246
SfcI CTRYAG 3 cut(s) 38, 198, 270
SfuI TTCGAA 1 cut(s) 691
SmiMI CAYNNNNRTG 2 cut(s) 1339, 1410
SmlI CTYRAG 1 cut(s) 1393
SmoI CTYRAG 1 cut(s) 1393
Sse9I AATT 6 cut(s) 6, 118, 207, 729, 746, 1245
SsiI CCGC 3 cut(s) 179, 541, 610
SspMI CTAG 5 cut(s) 371, 584, 618, 1238, 1401
SstI GAGCTC 2 cut(s) 899, 1115
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 1074
TaaI ACNGT 5 cut(s) 94, 157, 170, 857, 1446
TaqI TCGA 4 cut(s) 309, 570, 691, 1422
TasI AATT 6 cut(s) 6, 118, 207, 729, 746, 1245
TatI WGTACW 1 cut(s) 708
TauI GCSGC 2 cut(s) 182, 612
TfiI GAWTC 2 cut(s) 283, 289
Tru1I TTAA 2 cut(s) 1286, 1394
Tru9I TTAA 2 cut(s) 1286, 1394
TscAI CASTG 4 cut(s) 162, 1099, 1104, 1276
TseFI GTSAC 2 cut(s) 338, 916
TseI GCWGC 7 cut(s) 197, 275, 601, 1058, 1130, 1133, 1241
Tsp45I GTSAC 2 cut(s) 338, 916
TspDTI ATGAA 4 cut(s) 20, 550, 918, 1111
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 4 cut(s) 162, 1099, 1104, 1276
Tth111I GACNNNGTC 1 cut(s) 344
Van91I CCANNNNNTGG 1 cut(s) 326
Vha464I CTTAAG 1 cut(s) 1393
XapI RAATTY 1 cut(s) 118
XbaI TCTAGA 1 cut(s) 583
XceI RCATGY 1 cut(s) 1409
XspI CTAG 5 cut(s) 371, 584, 618, 1238, 1401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.