Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8462433.1

Orthogroup ID

OG0002097

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1692

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8462433.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1364 bp

gatgtagcatctgctggttcaatacagtctgctatgtattatgtattcggcacttccaagccaaccgggcacttgcattgtccctaacaattagtttcaatggcgtaagcgcagccctctacagcctcattgccaatgcaataaacccggctgatgacaacctctacctcttattgaatgcagtagttccactcttcacatctggtgttgcactaatccctctgcttcgtcaaccgccttcaattcagccactgtctcgtgaggctacttatcgagactccaggatttttctttgcctgaacatcctagcagtggtaacaggcctatatctcctcttcctcaactcactgtcctctaagatatcaaatgctcgaattctcttggttggtgctatttttctcctgatcttacctctatgtctgcctggcattgcatatgctagggagtgggctcgtcgaaacatgccctggagcttccagaatgatgactcgtcaaacttcaatctggccaaccctaatgatcttgagctccataaggaactcattgctgaaaatgaaagtggaaatgtggtgaatgccacttcttatgggatggtagacaagcaaggttgtttatggtgttttgggaaggtgatggagaaagacaggttgacagtgctaggggaggaacactctgctcggttgctcatacgccggtgggatttttggctatactatgctgcatatttttgtggcggaactattggattggtctatagcaacaatcttgggcagatttgtgaatcacttggatacggtaccaagaccaattctcttgtcacactatactcttcatgctccttctttggtcgtttactagcagcttcccctgatttccttcgcgataagttatactttgctaggactgggtggcttgcagttgcgctggtaccaacaccaatcgcgttcctcctgcttactctatcaggcagtgaagcaatgttgcgtgccggaacaggcttcatcgggataagctctgggtttgtgttttctgcagcggtgtcagtaacatcagagctttttgggccaaacagcgcgggtgtaaaccacaacatcctcatcaccaacatccctattggctcactcctctatggccttcttgcagctttggtgtatgattccaacgaaggaagctcactaatccgggagaactttttaaaagaagcaacattgtgcatgggtagggcatgctacaggcagacattcatatggtggggctgtatttcagttgtagggttagcatcaagcgtcttgttattcctacggaccagagctgcttacaatcgttttgagaggaacagatgtcgaacagagtcctcctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

453

Amino Acids

49.96

Weight (kDa)

8.58

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19450 AT4G19450 AT5G45275
fragaria_vesca	FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730
malus_domestica	MD02G1233200.v1.1 MD06G1022100.v1.1 MD07G1080400.v1.1 MD16G1287800.v1.1
prunus_persica	Prupe.2G104800_v2.0.a1 Prupe.5G016300_v2.0.a1
pyrus_communis	pycom06g01600 pycom07g06400
rosa_chinensis	RchiOBHm_Chr1g0342361 RchiOBHm_Chr7g0214811
rosa_laevigata	RLG00000002719 RLG00000002720 RLG00000029156
rosa_multiflora	Rmu_co8462433.1_g000001 Rmu_sc0002308.1_g000032 Rmu_sc0012155.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245010 Rroxscaffold_4G00312980
rosa_rugosa	Rorug01G0151600.1 Rorug07G0147200 Rorug07G0147300 Rorug07G0147400
rosa_samantha	Rh1AG166000 Rh1BG132500 Rh1CG154600 Rh1DG167400 Rh7AG284200 Rh7BG275100 Rh7CG303600 Rh7DG287500
rosa_wichuraiana	Rw1G013870 Rw7G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	796, 927
AccB1I	GGYRCC	2 cut(s)	796, 927
AccI	GTMKAC	1 cut(s)	596
AccII	CGCG	3 cut(s)	881, 943, 1075
AciI	CCGC	4 cut(s)	235, 734, 1036, 1075
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	2 cut(s)	798, 929
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	5 cut(s)	21, 99, 177, 242, 501
AjnI	CCWGG	3 cut(s)	280, 423, 466
AluBI	AGCT	8 cut(s)	473, 528, 862, 1013, 1056, 1144, 1172, 1312
AluI	AGCT	8 cut(s)	473, 528, 862, 1013, 1056, 1144, 1172, 1312
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	2 cut(s)	260, 269
AlwNI	CAGNNNCTG	1 cut(s)	252
AoxI	GGCC	4 cut(s)	321, 506, 1063, 1131
ApeKI	GCWGC	6 cut(s)	112, 718, 859, 1033, 1141, 1312
ApoI	RAATTY	1 cut(s)	374
Asp718I	GGTACC	2 cut(s)	796, 927
AspLEI	GCGC	3 cut(s)	112, 924, 1075
AspS9I	GGNCC	2 cut(s)	1063, 1304
AsuC2I	CCSGG	3 cut(s)	67, 148, 1183
AsuHPI	GGTGA	3 cut(s)	582, 642, 1092
AvaII	GGWCC	1 cut(s)	1304
BaeGI	GKGCMC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	508
BanI	GGYRCC	2 cut(s)	796, 927
BanII	GRGCYC	2 cut(s)	453, 530
BauI	CACGAG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	6 cut(s)	124, 705, 871, 1045, 1153, 1299
BccI	CCATC	2 cut(s)	585, 627
BciT130I	CCWGG	3 cut(s)	282, 425, 468
BciVI	GTATCC	1 cut(s)	784
BcnI	CCSGG	3 cut(s)	67, 148, 1183
BcoDI	GTCTC	2 cut(s)	260, 269
BfaI	CTAG	5 cut(s)	307, 440, 658, 856, 899
BfmI	CTRYAG	4 cut(s)	120, 753, 1031, 1230
BfuI	GTATCC	1 cut(s)	784
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	6 cut(s)	113, 719, 860, 1034, 1142, 1313
BlsI	GCNGC	6 cut(s)	114, 720, 861, 1035, 1143, 1314
Bme1390I	CCNGG	6 cut(s)	67, 148, 282, 425, 468, 1183
Bme18I	GGWCC	1 cut(s)	1304
BmgT120I	GGNCC	2 cut(s)	1063, 1304
BmiI	GGNNCC	2 cut(s)	798, 929
BmrFI	CCNGG	6 cut(s)	67, 148, 282, 425, 468, 1183
BmrI	ACTGGG	1 cut(s)	914
BmsI	GCATC	2 cut(s)	17, 1288
BmuI	ACTGGG	1 cut(s)	914
BplI	GAGNNNNNCTC	3 cut(s)	655, 687, 1342
BpmI	CTGGAG	2 cut(s)	264, 489
BpuEI	CTTGAG	1 cut(s)	544
BpuMI	CCSGG	3 cut(s)	67, 148, 1183
BsaJI	CCNNGG	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	1 cut(s)	909
Bse3DI	GCAATG	4 cut(s)	128, 428, 542, 983
BseBI	CCWGG	3 cut(s)	282, 425, 468
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	4 cut(s)	302, 596, 1091, 1106
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	4 cut(s)	128, 428, 542, 983
BseNI	ACTGG	1 cut(s)	909
BseRI	GAGGAG	3 cut(s)	322, 1114, 1347
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	6 cut(s)	124, 705, 871, 1045, 1153, 1299
Bsh1236I	CGCG	3 cut(s)	881, 943, 1075
BshFI	GGCC	4 cut(s)	323, 508, 1065, 1133
BshNI	GGYRCC	2 cut(s)	796, 927
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	5 cut(s)	66, 148, 693, 989, 1182
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	260, 269
BsmFI	GGGAC	1 cut(s)	66
BsmI	GAATGC	2 cut(s)	183, 579
BsnI	GGCC	4 cut(s)	323, 508, 1065, 1133
Bsp1286I	GDGCHC	3 cut(s)	72, 453, 530
Bsp143I	GATC	2 cut(s)	404, 519
Bsp68I	TCGCGA	1 cut(s)	881
BspACI	CCGC	4 cut(s)	235, 734, 1036, 1075
BspANI	GGCC	4 cut(s)	323, 508, 1065, 1133
BspFNI	CGCG	3 cut(s)	881, 943, 1075
BspLI	GGNNCC	2 cut(s)	798, 929
BspMAI	CTGCAG	1 cut(s)	1035
BspT107I	GGYRCC	2 cut(s)	796, 927
BsrDI	GCAATG	4 cut(s)	128, 428, 542, 983
BsrFI	RCCGGY	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	909
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	404, 519
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	3 cut(s)	282, 425, 468
Bst4CI	ACNGT	5 cut(s)	27, 254, 350, 654, 796
Bst6I	CTCTTC	3 cut(s)	199, 340, 834
BstC8I	GCNNGC	3 cut(s)	914, 986, 1227
BstDEI	CTNAG	2 cut(s)	356, 1361
BstF5I	GGATG	4 cut(s)	302, 596, 1091, 1106
BstFNI	CGCG	3 cut(s)	881, 943, 1075
BstHHI	GCGC	3 cut(s)	112, 924, 1075
BstKTI	GATC	2 cut(s)	407, 522
BstMAI	GTCTC	2 cut(s)	260, 269
BstMBI	GATC	2 cut(s)	404, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 1062
BstNI	CCWGG	3 cut(s)	282, 425, 468
BstNSI	RCATGY	2 cut(s)	465, 1229
BstSCI	CCNGG	6 cut(s)	65, 146, 280, 423, 466, 1181
BstSFI	CTRYAG	4 cut(s)	120, 753, 1031, 1230
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	3 cut(s)	881, 943, 1075
BstV1I	GCAGC	6 cut(s)	124, 705, 871, 1045, 1153, 1299
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	4 cut(s)	323, 508, 1065, 1133
BtsCI	GGATG	4 cut(s)	302, 596, 1091, 1106
BtsI	GCAGTG	2 cut(s)	317, 975
BtsIMutI	CAGTG	5 cut(s)	250, 317, 346, 659, 975
BtuMI	TCGCGA	1 cut(s)	881
Cac8I	GCNNGC	3 cut(s)	914, 986, 1227
CaiI	CAGNNNCTG	1 cut(s)	252
CfoI	GCGC	3 cut(s)	112, 924, 1075
Cfr10I	RCCGGY	1 cut(s)	692
Cfr13I	GGNCC	2 cut(s)	1063, 1304
CseI	GACGC	1 cut(s)	1275
Csp6I	GTAC	2 cut(s)	797, 928
CviAII	CATG	4 cut(s)	462, 833, 1215, 1226
CviQI	GTAC	2 cut(s)	797, 928
DdeI	CTNAG	2 cut(s)	356, 1361
DpnI	GATC	2 cut(s)	406, 521
DpnII	GATC	2 cut(s)	404, 519
DraI	TTTAAA	1 cut(s)	1196
EaeI	YGGCCR	1 cut(s)	506
Eam1104I	CTCTTC	3 cut(s)	199, 340, 834
EarI	CTCTTC	3 cut(s)	199, 340, 834
EciI	GGCGGA	1 cut(s)	749
Ecl136II	GAGCTC	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	2 cut(s)	453, 530
Eco32I	GATATC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	1304
Eco53kI	GAGCTC	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	3 cut(s)	280, 423, 466
EcoRV	GATATC	1 cut(s)	362
EcoT38I	GRGCYC	2 cut(s)	453, 530
FaeI	CATG	4 cut(s)	465, 836, 1218, 1229
FalI	AAGNNNNNCTT	2 cut(s)	877, 909
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	4 cut(s)	461, 832, 1214, 1225
FauI	CCCGC	1 cut(s)	1068
FauNDI	CATATG	2 cut(s)	435, 1246
FblI	GTMKAC	1 cut(s)	596
Fnu4HI	GCNGC	6 cut(s)	113, 719, 860, 1034, 1142, 1313
FokI	GGATG	4 cut(s)	289, 603, 1078, 1093
FriOI	GRGCYC	2 cut(s)	453, 530
Fsp4HI	GCNGC	6 cut(s)	113, 719, 860, 1034, 1142, 1313
FspBI	CTAG	5 cut(s)	307, 440, 658, 856, 899
GlaI	GCGC	3 cut(s)	111, 923, 1074
GluI	GCNGC	6 cut(s)	113, 719, 860, 1034, 1142, 1313
GsuI	CTGGAG	2 cut(s)	264, 489
HaeIII	GGCC	4 cut(s)	323, 508, 1065, 1133
HapII	CCGG	5 cut(s)	66, 148, 693, 989, 1182
HgaI	GACGC	1 cut(s)	1275
HhaI	GCGC	3 cut(s)	112, 924, 1075
Hin1II	CATG	4 cut(s)	465, 836, 1218, 1229
Hin6I	GCGC	3 cut(s)	110, 922, 1073
HinP1I	GCGC	3 cut(s)	110, 922, 1073
HincII	GTYRAC	2 cut(s)	232, 650
HindII	GTYRAC	2 cut(s)	232, 650
HinfI	GANTC	5 cut(s)	277, 487, 781, 1156, 1351
HpaII	CCGG	5 cut(s)	66, 148, 693, 989, 1182
HphI	GGTGA	3 cut(s)	582, 642, 1092
Hpy166II	GTNNAC	5 cut(s)	232, 597, 650, 853, 1083
Hpy188I	TCNGA	1 cut(s)	1053
Hpy188III	TCNNGA	7 cut(s)	259, 274, 402, 477, 523, 880, 1005
Hpy8I	GTNNAC	5 cut(s)	232, 597, 650, 853, 1083
Hpy99I	CGWCG	1 cut(s)	458
HpyAV	CCTTC	6 cut(s)	248, 621, 849, 886, 1144, 1159
HpyCH4III	ACNGT	5 cut(s)	27, 254, 350, 654, 796
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 1062
HpyF3I	CTNAG	2 cut(s)	356, 1361
Hsp92II	CATG	4 cut(s)	465, 836, 1218, 1229
HspAI	GCGC	3 cut(s)	110, 922, 1073
KpnI	GGTACC	2 cut(s)	800, 931
Kzo9I	GATC	2 cut(s)	404, 519
LmnI	GCTCC	3 cut(s)	470, 533, 841
Lsp1109I	GCAGC	6 cut(s)	124, 705, 871, 1045, 1153, 1299
LweI	GCATC	2 cut(s)	17, 1288
MaeI	CTAG	5 cut(s)	307, 440, 658, 856, 899
MaeIII	GTNAC	3 cut(s)	315, 816, 1044
MalI	GATC	2 cut(s)	406, 521
MboI	GATC	2 cut(s)	404, 519
MboII	GAAGA	3 cut(s)	186, 327, 821
MhlI	GDGCHC	3 cut(s)	72, 453, 530
MlsI	TGGCCA	1 cut(s)	508
MluCI	AATT	4 cut(s)	89, 242, 374, 807
MluNI	TGGCCA	1 cut(s)	508
MlyI	GAGTC	3 cut(s)	271, 481, 1360
MmeI	TCCRAC	1 cut(s)	1184
Mox20I	TGGCCA	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	508
MseI	TTAA	1 cut(s)	1195
MslI	CAYNNNNRTG	1 cut(s)	1245
Msp20I	TGGCCA	1 cut(s)	508
MspA1I	CMGCKG	1 cut(s)	1036
MspI	CCGG	5 cut(s)	66, 148, 693, 989, 1182
MspR9I	CCNGG	6 cut(s)	67, 148, 282, 425, 468, 1183
Mva1269I	GAATGC	2 cut(s)	183, 579
MvaI	CCWGG	3 cut(s)	282, 425, 468
MvnI	CGCG	3 cut(s)	881, 943, 1075
MwoI	GCNNNNNNNGC	2 cut(s)	67, 1062
NciI	CCSGG	3 cut(s)	67, 148, 1183
NdeI	CATATG	2 cut(s)	435, 1246
NdeII	GATC	2 cut(s)	404, 519
NlaIII	CATG	4 cut(s)	465, 836, 1218, 1229
NlaIV	GGNNCC	2 cut(s)	798, 929
NmuCI	GTSAC	1 cut(s)	816
NruI	TCGCGA	1 cut(s)	881
NspI	RCATGY	2 cut(s)	465, 1229
PaeI	GCATGC	1 cut(s)	1229
PceI	AGGCCT	1 cut(s)	323
PctI	GAATGC	2 cut(s)	183, 579
PfeI	GAWTC	2 cut(s)	781, 1156
PfoI	TCCNGGA	2 cut(s)	280, 1181
PkrI	GCNGC	6 cut(s)	114, 720, 861, 1035, 1143, 1314
PleI	GAGTC	3 cut(s)	271, 481, 1359
PpsI	GAGTC	3 cut(s)	271, 481, 1359
Psp124BI	GAGCTC	1 cut(s)	530
Psp6I	CCWGG	3 cut(s)	280, 423, 466
PspGI	CCWGG	3 cut(s)	280, 423, 466
PspN4I	GGNNCC	2 cut(s)	798, 929
PspPI	GGNCC	2 cut(s)	1063, 1304
PstI	CTGCAG	1 cut(s)	1035
PstNI	CAGNNNCTG	1 cut(s)	252
RruI	TCGCGA	1 cut(s)	881
RsaI	GTAC	2 cut(s)	798, 929
RsaNI	GTAC	2 cut(s)	797, 928
RseI	CAYNNNNRTG	1 cut(s)	1245
SacI	GAGCTC	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	1195
SatI	GCNGC	6 cut(s)	113, 719, 860, 1034, 1142, 1313
Sau3AI	GATC	2 cut(s)	404, 519
Sau96I	GGNCC	2 cut(s)	1063, 1304
SchI	GAGTC	3 cut(s)	271, 481, 1360
ScrFI	CCNGG	6 cut(s)	67, 148, 282, 425, 468, 1183
SduI	GDGCHC	3 cut(s)	72, 453, 530
SfaNI	GCATC	2 cut(s)	17, 1288
SfcI	CTRYAG	4 cut(s)	120, 753, 1031, 1230
SgrAI	CRCCGGYG	1 cut(s)	692
SinI	GGWCC	1 cut(s)	1304
SmiMI	CAYNNNNRTG	1 cut(s)	1245
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
SphI	GCATGC	1 cut(s)	1229
Sse9I	AATT	4 cut(s)	89, 242, 374, 807
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	4 cut(s)	235, 734, 1036, 1075
SspMI	CTAG	5 cut(s)	307, 440, 658, 856, 899
SstI	GAGCTC	1 cut(s)	530
StuI	AGGCCT	1 cut(s)	323
StyD4I	CCNGG	6 cut(s)	65, 146, 280, 423, 466, 1181
TaaI	ACNGT	5 cut(s)	27, 254, 350, 654, 796
TaqI	TCGA	4 cut(s)	273, 372, 456, 1344
TasI	AATT	4 cut(s)	89, 242, 374, 807
TfiI	GAWTC	2 cut(s)	781, 1156
Tru1I	TTAA	1 cut(s)	1195
Tru9I	TTAA	1 cut(s)	1195
TscAI	CASTG	5 cut(s)	257, 317, 353, 659, 975
TseFI	GTSAC	1 cut(s)	816
TseI	GCWGC	6 cut(s)	112, 718, 859, 1033, 1141, 1312
Tsp45I	GTSAC	1 cut(s)	816
TspDTI	ATGAA	4 cut(s)	569, 821, 990, 1233
TspGWI	ACGGA	1 cut(s)	1317
TspRI	CASTG	5 cut(s)	257, 317, 353, 659, 975
VpaK11BI	GGWCC	1 cut(s)	1304
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	2 cut(s)	465, 1229
XmiI	GTMKAC	1 cut(s)	596
XspI	CTAG	5 cut(s)	307, 440, 658, 856, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.