Nodulin-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G19450 AT4G19450 AT5G45275 |
| fragaria_vesca | FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 |
| malus_domestica | MD02G1233200.v1.1 MD06G1022100.v1.1 MD07G1080400.v1.1 MD16G1287800.v1.1 |
| prunus_persica | Prupe.2G104800_v2.0.a1 Prupe.5G016300_v2.0.a1 |
| pyrus_communis | pycom06g01600 pycom07g06400 |
| rosa_chinensis | RchiOBHm_Chr1g0342361 RchiOBHm_Chr7g0214811 |
| rosa_laevigata | RLG00000002719 RLG00000002720 RLG00000029156 |
| rosa_multiflora | Rmu_co8462433.1_g000001 Rmu_sc0002308.1_g000032 Rmu_sc0012155.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00245010 Rroxscaffold_4G00312980 |
| rosa_rugosa | Rorug01G0151600.1 Rorug07G0147200 Rorug07G0147300 Rorug07G0147400 |
| rosa_samantha | Rh1AG166000 Rh1BG132500 Rh1CG154600 Rh1DG167400 Rh7AG284200 Rh7BG275100 Rh7CG303600 Rh7DG287500 |
| rosa_wichuraiana | Rw1G013870 Rw7G024250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1686 |
| AccB1I | GGYRCC | 1 cut(s) | 1294 |
| AccI | GTMKAC | 2 cut(s) | 954, 1119 |
| AccII | CGCG | 1 cut(s) | 83 |
| AciI | CCGC | 2 cut(s) | 38, 447 |
| AcoI | YGGCCR | 2 cut(s) | 1135, 1213 |
| AcsI | RAATTY | 1 cut(s) | 922 |
| AcvI | CACGTG | 1 cut(s) | 773 |
| AfaI | GTAC | 1 cut(s) | 1056 |
| AfeI | AGCGCT | 1 cut(s) | 1441 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 643 |
| AgsI | TTSAA | 7 cut(s) | 281, 355, 433, 578, 832, 1632, 1650 |
| AhlI | ACTAGT | 2 cut(s) | 1172, 1282 |
| AjnI | CCWGG | 1 cut(s) | 754 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 954, 986 |
| AleI | CACNNNNGTG | 1 cut(s) | 775 |
| Alw21I | GWGCWC | 2 cut(s) | 561, 1038 |
| Alw26I | GTCTC | 2 cut(s) | 420, 734 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 345 |
| Ama87I | CYCGRG | 1 cut(s) | 481 |
| Aor51HI | AGCGCT | 1 cut(s) | 1441 |
| AoxI | GGCC | 9 cut(s) | 150, 259, 567, 594, 906, 1135, 1213, 1429, 1498 |
| ApeKI | GCWGC | 8 cut(s) | 130, 233, 339, 1048, 1085, 1348, 1400, 1508 |
| ApoI | RAATTY | 1 cut(s) | 922 |
| AspLEI | GCGC | 1 cut(s) | 1442 |
| AspS9I | GGNCC | 2 cut(s) | 568, 1430 |
| AsuC2I | CCSGG | 1 cut(s) | 401 |
| AsuHPI | GGTGA | 4 cut(s) | 1009, 1040, 1224, 1459 |
| AvaI | CYCGRG | 1 cut(s) | 481 |
| BaeGI | GKGCMC | 1 cut(s) | 406 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 41, 74 |
| BalI | TGGCCA | 1 cut(s) | 1137 |
| BanI | GGYRCC | 1 cut(s) | 1294 |
| BanII | GRGCYC | 1 cut(s) | 784 |
| BauI | CACGAG | 1 cut(s) | 32 |
| BbrPI | CACGTG | 1 cut(s) | 773 |
| Bbv12I | GWGCWC | 2 cut(s) | 561, 1038 |
| BbvCI | CCTCAGC | 1 cut(s) | 591 |
| BbvI | GCAGC | 8 cut(s) | 142, 220, 351, 1035, 1072, 1335, 1412, 1520 |
| BccI | CCATC | 4 cut(s) | 503, 994, 1056, 1269 |
| BceAI | ACGGC | 2 cut(s) | 1200, 1513 |
| BciT130I | CCWGG | 1 cut(s) | 756 |
| BciVI | GTATCC | 2 cut(s) | 42, 1151 |
| BcnI | CCSGG | 1 cut(s) | 401 |
| BcoDI | GTCTC | 2 cut(s) | 420, 734 |
| BcuI | ACTAGT | 2 cut(s) | 1172, 1282 |
| BfaI | CTAG | 6 cut(s) | 518, 638, 1025, 1044, 1173, 1283 |
| BfmI | CTRYAG | 3 cut(s) | 1120, 1398, 1597 |
| BfoI | RGCGCY | 1 cut(s) | 1443 |
| BfuI | GTATCC | 2 cut(s) | 42, 1151 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 401, 905 |
| BlpI | GCTNAGC | 1 cut(s) | 541 |
| Bme1390I | CCNGG | 2 cut(s) | 401, 756 |
| BmeT110I | CYCGRG | 1 cut(s) | 481 |
| BmgT120I | GGNCC | 2 cut(s) | 568, 1430 |
| BmiI | GGNNCC | 2 cut(s) | 570, 1296 |
| BmrFI | CCNGG | 2 cut(s) | 401, 756 |
| BmrI | ACTGGG | 1 cut(s) | 566 |
| BmsI | GCATC | 3 cut(s) | 326, 351, 387 |
| BmuI | ACTGGG | 1 cut(s) | 566 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1718 |
| Bpu10I | CCTNAGC | 1 cut(s) | 591 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 541 |
| BpuEI | CTTGAG | 1 cut(s) | 784 |
| BpuMI | CCSGG | 1 cut(s) | 401 |
| BsaAI | YACGTR | 1 cut(s) | 773 |
| BsaJI | CCNNGG | 1 cut(s) | 153 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 643 |
| Bse1I | ACTGG | 2 cut(s) | 572, 1276 |
| Bse3DI | GCAATG | 2 cut(s) | 462, 1350 |
| BseBI | CCWGG | 1 cut(s) | 756 |
| BseDI | CCNNGG | 1 cut(s) | 153 |
| BseGI | GGATG | 8 cut(s) | 30, 341, 533, 549, 633, 1280, 1458, 1473 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 643 |
| BseMI | GCAATG | 2 cut(s) | 462, 1350 |
| BseMII | CTCAG | 5 cut(s) | 137, 582, 1053, 1239, 1563 |
| BseNI | ACTGG | 2 cut(s) | 572, 1276 |
| BseRI | GAGGAG | 3 cut(s) | 653, 656, 1735 |
| BseSI | GKGCMC | 1 cut(s) | 406 |
| BseX3I | CGGCCG | 1 cut(s) | 1213 |
| BseXI | GCAGC | 8 cut(s) | 142, 220, 351, 1035, 1072, 1335, 1412, 1520 |
| BseYI | CCCAGC | 1 cut(s) | 112 |
| BsgI | GTGCAG | 1 cut(s) | 149 |
| Bsh1236I | CGCG | 1 cut(s) | 83 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1216 |
| BshFI | GGCC | 9 cut(s) | 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500 |
| BshNI | GGYRCC | 1 cut(s) | 1294 |
| BsiEI | CGRYCG | 1 cut(s) | 1216 |
| BsiHKAI | GWGCWC | 2 cut(s) | 561, 1038 |
| BsiHKCI | CYCGRG | 1 cut(s) | 481 |
| BsiSI | CCGG | 3 cut(s) | 400, 537, 1383 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 643 |
| BsmAI | GTCTC | 2 cut(s) | 420, 734 |
| BsnI | GGCC | 9 cut(s) | 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500 |
| BsoBI | CYCGRG | 1 cut(s) | 481 |
| Bsp1286I | GDGCHC | 4 cut(s) | 406, 561, 784, 1038 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 541 |
| BspACI | CCGC | 2 cut(s) | 38, 447 |
| BspANI | GGCC | 9 cut(s) | 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500 |
| BspCNI | CTCAG | 5 cut(s) | 136, 583, 1052, 1238, 1562 |
| BspFNI | CGCG | 1 cut(s) | 83 |
| BspLI | GGNNCC | 2 cut(s) | 570, 1296 |
| BspMAI | CTGCAG | 1 cut(s) | 1402 |
| BspQI | GCTCTTC | 1 cut(s) | 1026 |
| BspT107I | GGYRCC | 1 cut(s) | 1294 |
| BsrDI | GCAATG | 2 cut(s) | 462, 1350 |
| BsrI | ACTGG | 2 cut(s) | 572, 1276 |
| BssECI | CCNNGG | 1 cut(s) | 153 |
| BssSI | CACGAG | 1 cut(s) | 32 |
| Bst2BI | CACGAG | 1 cut(s) | 32 |
| Bst2UI | CCWGG | 1 cut(s) | 756 |
| Bst4CI | ACNGT | 4 cut(s) | 361, 424, 1021, 1163 |
| Bst6I | CTCTTC | 3 cut(s) | 509, 533, 1026 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 345 |
| BstBAI | YACGTR | 1 cut(s) | 773 |
| BstC8I | GCNNGC | 3 cut(s) | 1323, 1353, 1444 |
| BstDEI | CTNAG | 9 cut(s) | 123, 541, 591, 712, 1039, 1225, 1549, 1710, 1749 |
| BstF5I | GGATG | 8 cut(s) | 30, 341, 533, 549, 633, 1280, 1458, 1473 |
| BstFNI | CGCG | 1 cut(s) | 83 |
| BstH2I | RGCGCY | 1 cut(s) | 1443 |
| BstHHI | GCGC | 1 cut(s) | 1442 |
| BstMAI | GTCTC | 2 cut(s) | 420, 734 |
| BstMCI | CGRYCG | 1 cut(s) | 1216 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 345, 401, 905, 914, 1437, 1587 |
| BstNI | CCWGG | 1 cut(s) | 756 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1718 |
| BstSCI | CCNGG | 2 cut(s) | 399, 754 |
| BstSFI | CTRYAG | 3 cut(s) | 1120, 1398, 1597 |
| BstSLI | GKGCMC | 1 cut(s) | 406 |
| BstUI | CGCG | 1 cut(s) | 83 |
| BstV1I | GCAGC | 8 cut(s) | 142, 220, 351, 1035, 1072, 1335, 1412, 1520 |
| BstZI | CGGCCG | 1 cut(s) | 1213 |
| BsuI | GTATCC | 2 cut(s) | 42, 1151 |
| BsuRI | GGCC | 9 cut(s) | 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500 |
| BtsCI | GGATG | 8 cut(s) | 30, 341, 533, 549, 633, 1280, 1458, 1473 |
| BtsI | GCAGTG | 1 cut(s) | 1342 |
| BtsIMutI | CAGTG | 4 cut(s) | 843, 1026, 1342, 1557 |
| Cac8I | GCNNGC | 3 cut(s) | 1323, 1353, 1444 |
| CaiI | CAGNNNCTG | 1 cut(s) | 345 |
| CfoI | GCGC | 1 cut(s) | 1442 |
| Cfr13I | GGNCC | 2 cut(s) | 568, 1430 |
| CseI | GACGC | 2 cut(s) | 72, 1723 |
| Csp6I | GTAC | 1 cut(s) | 1055 |
| CviAII | CATG | 9 cut(s) | 45, 199, 229, 241, 613, 760, 1200, 1582, 1593 |
| CviQI | GTAC | 1 cut(s) | 1055 |
| DdeI | CTNAG | 9 cut(s) | 123, 541, 591, 712, 1039, 1225, 1549, 1710, 1749 |
| EaeI | YGGCCR | 2 cut(s) | 1135, 1213 |
| EagI | CGGCCG | 1 cut(s) | 1213 |
| Eam1104I | CTCTTC | 3 cut(s) | 509, 533, 1026 |
| EarI | CTCTTC | 3 cut(s) | 509, 533, 1026 |
| EclXI | CGGCCG | 1 cut(s) | 1213 |
| Eco24I | GRGCYC | 1 cut(s) | 784 |
| Eco47III | AGCGCT | 1 cut(s) | 1441 |
| Eco52I | CGGCCG | 1 cut(s) | 1213 |
| Eco72I | CACGTG | 1 cut(s) | 773 |
| Eco88I | CYCGRG | 1 cut(s) | 481 |
| EcoO109I | RGGNCCY | 1 cut(s) | 568 |
| EcoRII | CCWGG | 1 cut(s) | 754 |
| EcoT22I | ATGCAT | 1 cut(s) | 380 |
| EcoT38I | GRGCYC | 1 cut(s) | 784 |
| FaeI | CATG | 9 cut(s) | 48, 202, 232, 244, 616, 763, 1203, 1585, 1596 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 950, 982, 1666, 1698 |
| FatI | CATG | 9 cut(s) | 44, 198, 228, 240, 612, 759, 1199, 1581, 1592 |
| FauNDI | CATATG | 2 cut(s) | 943, 1613 |
| FblI | GTMKAC | 2 cut(s) | 954, 1119 |
| FokI | GGATG | 8 cut(s) | 37, 348, 520, 536, 620, 1287, 1445, 1460 |
| FriOI | GRGCYC | 1 cut(s) | 784 |
| FspBI | CTAG | 6 cut(s) | 518, 638, 1025, 1044, 1173, 1283 |
| GlaI | GCGC | 1 cut(s) | 1441 |
| GsaI | CCCAGC | 1 cut(s) | 116 |
| HaeII | RGCGCY | 1 cut(s) | 1443 |
| HaeIII | GGCC | 9 cut(s) | 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500 |
| HapII | CCGG | 3 cut(s) | 400, 537, 1383 |
| HgaI | GACGC | 2 cut(s) | 72, 1723 |
| HhaI | GCGC | 1 cut(s) | 1442 |
| Hin1II | CATG | 9 cut(s) | 48, 202, 232, 244, 616, 763, 1203, 1585, 1596 |
| Hin6I | GCGC | 1 cut(s) | 1440 |
| HinP1I | GCGC | 1 cut(s) | 1440 |
| HincII | GTYRAC | 2 cut(s) | 841, 1017 |
| HindII | GTYRAC | 2 cut(s) | 841, 1017 |
| HindIII | AAGCTT | 1 cut(s) | 1651 |
| HinfI | GANTC | 3 cut(s) | 285, 608, 1523 |
| HpaII | CCGG | 3 cut(s) | 400, 537, 1383 |
| HphI | GGTGA | 4 cut(s) | 1009, 1040, 1224, 1459 |
| Hpy166II | GTNNAC | 6 cut(s) | 60, 841, 955, 1017, 1120, 1450 |
| Hpy188I | TCNGA | 7 cut(s) | 97, 157, 383, 688, 705, 814, 1420 |
| Hpy188III | TCNNGA | 2 cut(s) | 15, 605 |
| Hpy8I | GTNNAC | 6 cut(s) | 60, 841, 955, 1017, 1120, 1450 |
| Hpy99I | CGWCG | 3 cut(s) | 491, 606, 1062 |
| HpyCH4III | ACNGT | 4 cut(s) | 361, 424, 1021, 1163 |
| HpyCH4IV | ACGT | 3 cut(s) | 772, 808, 1057 |
| HpyCH4V | TGCA | 8 cut(s) | 130, 339, 378, 473, 1088, 1400, 1508, 1581 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 345, 401, 905, 914, 1437, 1587 |
| HpyF3I | CTNAG | 9 cut(s) | 123, 541, 591, 712, 1039, 1225, 1549, 1710, 1749 |
| HpySE526I | ACGT | 3 cut(s) | 772, 808, 1057 |
| Hsp92II | CATG | 9 cut(s) | 48, 202, 232, 244, 616, 763, 1203, 1585, 1596 |
| HspAI | GCGC | 1 cut(s) | 1440 |
| LguI | GCTCTTC | 1 cut(s) | 1026 |
| LmnI | GCTCC | 3 cut(s) | 564, 1208, 1385 |
| Lsp1109I | GCAGC | 8 cut(s) | 142, 220, 351, 1035, 1072, 1335, 1412, 1520 |
| LweI | GCATC | 3 cut(s) | 326, 351, 387 |
| MaeI | CTAG | 6 cut(s) | 518, 638, 1025, 1044, 1173, 1283 |
| MaeII | ACGT | 3 cut(s) | 772, 808, 1057 |
| MaeIII | GTNAC | 6 cut(s) | 605, 646, 1183, 1247, 1411, 1720 |
| MboII | GAAGA | 5 cut(s) | 496, 520, 1043, 1188, 1201 |
| MfeI | CAATTG | 2 cut(s) | 1305, 1479 |
| MhlI | GDGCHC | 4 cut(s) | 406, 561, 784, 1038 |
| MlsI | TGGCCA | 1 cut(s) | 1137 |
| MluCI | AATT | 4 cut(s) | 922, 937, 1305, 1479 |
| MluNI | TGGCCA | 1 cut(s) | 1137 |
| MlyI | GAGTC | 2 cut(s) | 279, 602 |
| Mox20I | TGGCCA | 1 cut(s) | 1137 |
| Mph1103I | ATGCAT | 1 cut(s) | 380 |
| MscI | TGGCCA | 1 cut(s) | 1137 |
| MseI | TTAA | 3 cut(s) | 510, 672, 1562 |
| MslI | CAYNNNNRTG | 3 cut(s) | 554, 775, 1612 |
| Msp20I | TGGCCA | 1 cut(s) | 1137 |
| MspA1I | CMGCKG | 1 cut(s) | 1403 |
| MspI | CCGG | 3 cut(s) | 400, 537, 1383 |
| MspR9I | CCNGG | 2 cut(s) | 401, 756 |
| MunI | CAATTG | 2 cut(s) | 1305, 1479 |
| MvaI | CCWGG | 1 cut(s) | 756 |
| MvnI | CGCG | 1 cut(s) | 83 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 345, 401, 905, 914, 1437, 1587 |
| NciI | CCSGG | 1 cut(s) | 401 |
| NdeI | CATATG | 2 cut(s) | 943, 1613 |
| NlaIII | CATG | 9 cut(s) | 48, 202, 232, 244, 616, 763, 1203, 1585, 1596 |
| NlaIV | GGNNCC | 2 cut(s) | 570, 1296 |
| NmuCI | GTSAC | 5 cut(s) | 605, 646, 1183, 1247, 1720 |
| NsiI | ATGCAT | 1 cut(s) | 380 |
| OliI | CACNNNNGTG | 1 cut(s) | 775 |
| PciSI | GCTCTTC | 1 cut(s) | 1026 |
| PfeI | GAWTC | 1 cut(s) | 1523 |
| PleI | GAGTC | 2 cut(s) | 279, 602 |
| PmaCI | CACGTG | 1 cut(s) | 773 |
| PmlI | CACGTG | 1 cut(s) | 773 |
| PpsI | GAGTC | 2 cut(s) | 279, 602 |
| Ppu21I | YACGTR | 1 cut(s) | 773 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1718 |
| PsiI | TTATAA | 1 cut(s) | 1686 |
| Psp6I | CCWGG | 1 cut(s) | 754 |
| PspCI | CACGTG | 1 cut(s) | 773 |
| PspFI | CCCAGC | 1 cut(s) | 112 |
| PspGI | CCWGG | 1 cut(s) | 754 |
| PspN4I | GGNNCC | 2 cut(s) | 570, 1296 |
| PspPI | GGNCC | 2 cut(s) | 568, 1430 |
| PstI | CTGCAG | 1 cut(s) | 1402 |
| PstNI | CAGNNNCTG | 1 cut(s) | 345 |
| PvuII | CAGCTG | 1 cut(s) | 1403 |
| RsaI | GTAC | 1 cut(s) | 1056 |
| RsaNI | GTAC | 1 cut(s) | 1055 |
| RseI | CAYNNNNRTG | 3 cut(s) | 554, 775, 1612 |
| SapI | GCTCTTC | 1 cut(s) | 1026 |
| SaqAI | TTAA | 3 cut(s) | 510, 672, 1562 |
| Sau96I | GGNCC | 2 cut(s) | 568, 1430 |
| SchI | GAGTC | 2 cut(s) | 279, 602 |
| ScrFI | CCNGG | 2 cut(s) | 401, 756 |
| SduI | GDGCHC | 4 cut(s) | 406, 561, 784, 1038 |
| SfaNI | GCATC | 3 cut(s) | 326, 351, 387 |
| SfcI | CTRYAG | 3 cut(s) | 1120, 1398, 1597 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 554, 775, 1612 |
| SmlI | CTYRAG | 1 cut(s) | 799 |
| SmoI | CTYRAG | 1 cut(s) | 799 |
| SpeI | ACTAGT | 2 cut(s) | 1172, 1282 |
| Sse9I | AATT | 4 cut(s) | 922, 937, 1305, 1479 |
| SsiI | CCGC | 2 cut(s) | 38, 447 |
| SspMI | CTAG | 6 cut(s) | 518, 638, 1025, 1044, 1173, 1283 |
| StyD4I | CCNGG | 2 cut(s) | 399, 754 |
| TaaI | ACNGT | 4 cut(s) | 361, 424, 1021, 1163 |
| TaiI | ACGT | 3 cut(s) | 775, 811, 1060 |
| TaqI | TCGA | 2 cut(s) | 14, 1060 |
| TasI | AATT | 4 cut(s) | 922, 937, 1305, 1479 |
| TauI | GCSGC | 2 cut(s) | 41, 449 |
| TfiI | GAWTC | 1 cut(s) | 1523 |
| Tru1I | TTAA | 3 cut(s) | 510, 672, 1562 |
| Tru9I | TTAA | 3 cut(s) | 510, 672, 1562 |
| TscAI | CASTG | 4 cut(s) | 850, 1026, 1342, 1557 |
| TseFI | GTSAC | 5 cut(s) | 605, 646, 1183, 1247, 1720 |
| TseI | GCWGC | 8 cut(s) | 130, 233, 339, 1048, 1085, 1348, 1400, 1508 |
| Tsp45I | GTSAC | 5 cut(s) | 605, 646, 1183, 1247, 1720 |
| TspDTI | ATGAA | 8 cut(s) | 81, 217, 229, 851, 930, 1188, 1303, 1600 |
| TspGWI | ACGGA | 2 cut(s) | 551, 1548 |
| TspRI | CASTG | 4 cut(s) | 850, 1026, 1342, 1557 |
| XapI | RAATTY | 1 cut(s) | 922 |
| XmiI | GTMKAC | 2 cut(s) | 954, 1119 |
| XspI | CTAG | 6 cut(s) | 518, 638, 1025, 1044, 1173, 1283 |
| Zsp2I | ATGCAT | 1 cut(s) | 380 |