MD07G1080400.v1.1

Nodulin-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
7781138 .. 7784745
3608 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1080400.v1.1.491

Sequence Viewer

Length: 1752 bp
ATGGTTGGGCAATCGAGAAAATGGATGATACTCGTGGCGGCGACATGGATACAGGCGTTCACAGGAACGAACTTTGATTTCGCGTCCTATTCATCTGACCTGAAATCTGTGCTGGGGATTTCTCAGGTGCAGCTCAACTATCTATCGGTGGCCTCGGATATGGGGAAGGCATTGGGTTGGTGTTCTGGGGTTTCTCTCATGTATTTTCCCTTGTGGGTTGTTATGTTCATGGCTGCCTTCATGGGTTTGTTTGGTTATGGCCTCCAATGGTTTGTCATTCAAAGACTCATCTCTCTGCCTTATGTTATGGTATTCCTTCTATGCTTGTTGGCTGGATGCAGCATCTGCTGGTTCAACACAGTCTGCTATGTTCTATGCATCAGACACTTCCAAGCCAACCGGGCACTTGCGTTGTCTCTCACAGTCAGTTTCAATGGGGTAAGTGCCGCCCTCTACACCCTCATTGCCAATGCAATAAACCCGAGCGACGATACCATCTACCTCTTCCTTAATGCTCTAGTTCCTCTCTTCACATCCGGCTTAGCACTCATCCCTGTGCTCCGTCAGGCCCCAGTTCAATCACTTCCTGCTGAGGCCACTCGTCGTGACTCCATGATTTTTCTTTTCCTAAACATCCTAGCTGTGGTCACAGGCATATATCTCCTCCTCCTTAACTCACTATCCTCTGATGTGTCAAAAGCTCGGACACTCTTAGTTGGTGCGATTTGTCTCCTAACCCTACCTCTGTGTCTGCCTGGCATGGCATACGCACGTGAGTGGGCTCGTAGGAACTTCCCCTCAAGCCTACGTTCTGAAAACTCATCAACCTTCAATCTGGTTGACACTGATGATTTTGAGCTTCATAAGGAACTCATTGATGTAAGTGAAAATGCTAATGCCACGAAGGCCACAAATGCCACAAATTCCACGAACTCCAATTCATATGGGCTGGTAGACAAGGAACGCTTTTTTGGGTGTTTTGCGTGTTTTGGGAAGGTGATGGAGAAGGATAGGTTGACAGTGCTAGGTGAAGAGCACTCAGCTAGGCTGCTTGTACGTCGATGGGATTTTTGGCTATACTATGCTGCATACTTTTGTGGGGGAACTATTGGGTTGGTCTACAGCAACAATCTTGGCCAGATTTCACAATCACTTGGATACAGTTCCCTGACTAGTTCTCTTGTCACACTATATTCTTCATGCTCCTTCTTCGGCCGTTTGCTCTCAGCTTCACCAGATTTCCTGCGTGACAAGGTTTATTTTGCGAGGACTGGATGGCTACTAGTTGCTCTGGTGCCAACACCAATTGCCTTCATTCTGCTTGCCACATCAGGCAGTGAGGCAATGCTGCGTGCTGGAACAGGCTTGATTGGGATAAGCTCCGGCTTTGTGTTCTCTGCAGCTGTGTCAGTTACATCAGAGCTTTTCGGCCCAAACAGCGCTGGCGTAAACCACAACATCCTCATCACCAACATCCCAATTGGCTCACTCCTATACGGCCTTCTTGCAGCTTTGGTGTATGATTCCAATGACGGAAGCTCAACAACCTCAGTGAGCTTGTTAAAGGAAGCAACATTGTGCATGGGAAGCTCATGCTATAGGCAGACATTCATATGGTGGGGCTGTATTTCAATAGTAGGGTTAGCTTCAAGCTTATTACTATTCCTACGAACAAGGACTGCTTATAATCGGTTTGAGAGGAATAGGACTAAGACGCAAGTCACACAATCCTCCTTACAAACCTCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

584

Amino Acids

63.88

Weight (kDa)

8.64

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 7 - 252 2.6e-82 Nodulin-like
NFD4_C PF23262 344 - 562 1e-50 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1686
AccB1I GGYRCC 1 cut(s) 1294
AccI GTMKAC 2 cut(s) 954, 1119
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 38, 447
AcoI YGGCCR 2 cut(s) 1135, 1213
AcsI RAATTY 1 cut(s) 922
AcvI CACGTG 1 cut(s) 773
AfaI GTAC 1 cut(s) 1056
AfeI AGCGCT 1 cut(s) 1441
AfiI CCNNNNNNNGG 1 cut(s) 643
AgsI TTSAA 7 cut(s) 281, 355, 433, 578, 832, 1632, 1650
AhlI ACTAGT 2 cut(s) 1172, 1282
AjnI CCWGG 1 cut(s) 754
AjuI GAANNNNNNNTTGG 2 cut(s) 954, 986
AleI CACNNNNGTG 1 cut(s) 775
Alw21I GWGCWC 2 cut(s) 561, 1038
Alw26I GTCTC 2 cut(s) 420, 734
AlwNI CAGNNNCTG 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 481
Aor51HI AGCGCT 1 cut(s) 1441
AoxI GGCC 9 cut(s) 150, 259, 567, 594, 906, 1135, 1213, 1429, 1498
ApeKI GCWGC 8 cut(s) 130, 233, 339, 1048, 1085, 1348, 1400, 1508
ApoI RAATTY 1 cut(s) 922
AspLEI GCGC 1 cut(s) 1442
AspS9I GGNCC 2 cut(s) 568, 1430
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 4 cut(s) 1009, 1040, 1224, 1459
AvaI CYCGRG 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 406
BaeI ACNNNNGTAYC 2 cut(s) 41, 74
BalI TGGCCA 1 cut(s) 1137
BanI GGYRCC 1 cut(s) 1294
BanII GRGCYC 1 cut(s) 784
BauI CACGAG 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 773
Bbv12I GWGCWC 2 cut(s) 561, 1038
BbvCI CCTCAGC 1 cut(s) 591
BbvI GCAGC 8 cut(s) 142, 220, 351, 1035, 1072, 1335, 1412, 1520
BccI CCATC 4 cut(s) 503, 994, 1056, 1269
BceAI ACGGC 2 cut(s) 1200, 1513
BciT130I CCWGG 1 cut(s) 756
BciVI GTATCC 2 cut(s) 42, 1151
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 2 cut(s) 420, 734
BcuI ACTAGT 2 cut(s) 1172, 1282
BfaI CTAG 6 cut(s) 518, 638, 1025, 1044, 1173, 1283
BfmI CTRYAG 3 cut(s) 1120, 1398, 1597
BfoI RGCGCY 1 cut(s) 1443
BfuI GTATCC 2 cut(s) 42, 1151
BglI GCCNNNNNGGC 2 cut(s) 401, 905
BlpI GCTNAGC 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 401, 756
BmeT110I CYCGRG 1 cut(s) 481
BmgT120I GGNCC 2 cut(s) 568, 1430
BmiI GGNNCC 2 cut(s) 570, 1296
BmrFI CCNGG 2 cut(s) 401, 756
BmrI ACTGGG 1 cut(s) 566
BmsI GCATC 3 cut(s) 326, 351, 387
BmuI ACTGGG 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 1718
Bpu10I CCTNAGC 1 cut(s) 591
Bpu1102I GCTNAGC 1 cut(s) 541
BpuEI CTTGAG 1 cut(s) 784
BpuMI CCSGG 1 cut(s) 401
BsaAI YACGTR 1 cut(s) 773
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse1I ACTGG 2 cut(s) 572, 1276
Bse3DI GCAATG 2 cut(s) 462, 1350
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 8 cut(s) 30, 341, 533, 549, 633, 1280, 1458, 1473
BseLI CCNNNNNNNGG 1 cut(s) 643
BseMI GCAATG 2 cut(s) 462, 1350
BseMII CTCAG 5 cut(s) 137, 582, 1053, 1239, 1563
BseNI ACTGG 2 cut(s) 572, 1276
BseRI GAGGAG 3 cut(s) 653, 656, 1735
BseSI GKGCMC 1 cut(s) 406
BseX3I CGGCCG 1 cut(s) 1213
BseXI GCAGC 8 cut(s) 142, 220, 351, 1035, 1072, 1335, 1412, 1520
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 1216
BshFI GGCC 9 cut(s) 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500
BshNI GGYRCC 1 cut(s) 1294
BsiEI CGRYCG 1 cut(s) 1216
BsiHKAI GWGCWC 2 cut(s) 561, 1038
BsiHKCI CYCGRG 1 cut(s) 481
BsiSI CCGG 3 cut(s) 400, 537, 1383
BslI CCNNNNNNNGG 1 cut(s) 643
BsmAI GTCTC 2 cut(s) 420, 734
BsnI GGCC 9 cut(s) 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500
BsoBI CYCGRG 1 cut(s) 481
Bsp1286I GDGCHC 4 cut(s) 406, 561, 784, 1038
Bsp1720I GCTNAGC 1 cut(s) 541
BspACI CCGC 2 cut(s) 38, 447
BspANI GGCC 9 cut(s) 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500
BspCNI CTCAG 5 cut(s) 136, 583, 1052, 1238, 1562
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 570, 1296
BspMAI CTGCAG 1 cut(s) 1402
BspQI GCTCTTC 1 cut(s) 1026
BspT107I GGYRCC 1 cut(s) 1294
BsrDI GCAATG 2 cut(s) 462, 1350
BsrI ACTGG 2 cut(s) 572, 1276
BssECI CCNNGG 1 cut(s) 153
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 4 cut(s) 361, 424, 1021, 1163
Bst6I CTCTTC 3 cut(s) 509, 533, 1026
BstAPI GCANNNNNTGC 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 773
BstC8I GCNNGC 3 cut(s) 1323, 1353, 1444
BstDEI CTNAG 9 cut(s) 123, 541, 591, 712, 1039, 1225, 1549, 1710, 1749
BstF5I GGATG 8 cut(s) 30, 341, 533, 549, 633, 1280, 1458, 1473
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 1443
BstHHI GCGC 1 cut(s) 1442
BstMAI GTCTC 2 cut(s) 420, 734
BstMCI CGRYCG 1 cut(s) 1216
BstMWI GCNNNNNNNGC 6 cut(s) 345, 401, 905, 914, 1437, 1587
BstNI CCWGG 1 cut(s) 756
BstPAI GACNNNNGTC 1 cut(s) 1718
BstSCI CCNGG 2 cut(s) 399, 754
BstSFI CTRYAG 3 cut(s) 1120, 1398, 1597
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 8 cut(s) 142, 220, 351, 1035, 1072, 1335, 1412, 1520
BstZI CGGCCG 1 cut(s) 1213
BsuI GTATCC 2 cut(s) 42, 1151
BsuRI GGCC 9 cut(s) 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500
BtsCI GGATG 8 cut(s) 30, 341, 533, 549, 633, 1280, 1458, 1473
BtsI GCAGTG 1 cut(s) 1342
BtsIMutI CAGTG 4 cut(s) 843, 1026, 1342, 1557
Cac8I GCNNGC 3 cut(s) 1323, 1353, 1444
CaiI CAGNNNCTG 1 cut(s) 345
CfoI GCGC 1 cut(s) 1442
Cfr13I GGNCC 2 cut(s) 568, 1430
CseI GACGC 2 cut(s) 72, 1723
Csp6I GTAC 1 cut(s) 1055
CviAII CATG 9 cut(s) 45, 199, 229, 241, 613, 760, 1200, 1582, 1593
CviQI GTAC 1 cut(s) 1055
DdeI CTNAG 9 cut(s) 123, 541, 591, 712, 1039, 1225, 1549, 1710, 1749
EaeI YGGCCR 2 cut(s) 1135, 1213
EagI CGGCCG 1 cut(s) 1213
Eam1104I CTCTTC 3 cut(s) 509, 533, 1026
EarI CTCTTC 3 cut(s) 509, 533, 1026
EclXI CGGCCG 1 cut(s) 1213
Eco24I GRGCYC 1 cut(s) 784
Eco47III AGCGCT 1 cut(s) 1441
Eco52I CGGCCG 1 cut(s) 1213
Eco72I CACGTG 1 cut(s) 773
Eco88I CYCGRG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 754
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 784
FaeI CATG 9 cut(s) 48, 202, 232, 244, 616, 763, 1203, 1585, 1596
FalI AAGNNNNNCTT 4 cut(s) 950, 982, 1666, 1698
FatI CATG 9 cut(s) 44, 198, 228, 240, 612, 759, 1199, 1581, 1592
FauNDI CATATG 2 cut(s) 943, 1613
FblI GTMKAC 2 cut(s) 954, 1119
FokI GGATG 8 cut(s) 37, 348, 520, 536, 620, 1287, 1445, 1460
FriOI GRGCYC 1 cut(s) 784
FspBI CTAG 6 cut(s) 518, 638, 1025, 1044, 1173, 1283
GlaI GCGC 1 cut(s) 1441
GsaI CCCAGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 1443
HaeIII GGCC 9 cut(s) 152, 261, 569, 596, 908, 1137, 1215, 1431, 1500
HapII CCGG 3 cut(s) 400, 537, 1383
HgaI GACGC 2 cut(s) 72, 1723
HhaI GCGC 1 cut(s) 1442
Hin1II CATG 9 cut(s) 48, 202, 232, 244, 616, 763, 1203, 1585, 1596
Hin6I GCGC 1 cut(s) 1440
HinP1I GCGC 1 cut(s) 1440
HincII GTYRAC 2 cut(s) 841, 1017
HindII GTYRAC 2 cut(s) 841, 1017
HindIII AAGCTT 1 cut(s) 1651
HinfI GANTC 3 cut(s) 285, 608, 1523
HpaII CCGG 3 cut(s) 400, 537, 1383
HphI GGTGA 4 cut(s) 1009, 1040, 1224, 1459
Hpy166II GTNNAC 6 cut(s) 60, 841, 955, 1017, 1120, 1450
Hpy188I TCNGA 7 cut(s) 97, 157, 383, 688, 705, 814, 1420
Hpy188III TCNNGA 2 cut(s) 15, 605
Hpy8I GTNNAC 6 cut(s) 60, 841, 955, 1017, 1120, 1450
Hpy99I CGWCG 3 cut(s) 491, 606, 1062
HpyCH4III ACNGT 4 cut(s) 361, 424, 1021, 1163
HpyCH4IV ACGT 3 cut(s) 772, 808, 1057
HpyCH4V TGCA 8 cut(s) 130, 339, 378, 473, 1088, 1400, 1508, 1581
HpyF10VI GCNNNNNNNGC 6 cut(s) 345, 401, 905, 914, 1437, 1587
HpyF3I CTNAG 9 cut(s) 123, 541, 591, 712, 1039, 1225, 1549, 1710, 1749
HpySE526I ACGT 3 cut(s) 772, 808, 1057
Hsp92II CATG 9 cut(s) 48, 202, 232, 244, 616, 763, 1203, 1585, 1596
HspAI GCGC 1 cut(s) 1440
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 3 cut(s) 564, 1208, 1385
Lsp1109I GCAGC 8 cut(s) 142, 220, 351, 1035, 1072, 1335, 1412, 1520
LweI GCATC 3 cut(s) 326, 351, 387
MaeI CTAG 6 cut(s) 518, 638, 1025, 1044, 1173, 1283
MaeII ACGT 3 cut(s) 772, 808, 1057
MaeIII GTNAC 6 cut(s) 605, 646, 1183, 1247, 1411, 1720
MboII GAAGA 5 cut(s) 496, 520, 1043, 1188, 1201
MfeI CAATTG 2 cut(s) 1305, 1479
MhlI GDGCHC 4 cut(s) 406, 561, 784, 1038
MlsI TGGCCA 1 cut(s) 1137
MluCI AATT 4 cut(s) 922, 937, 1305, 1479
MluNI TGGCCA 1 cut(s) 1137
MlyI GAGTC 2 cut(s) 279, 602
Mox20I TGGCCA 1 cut(s) 1137
Mph1103I ATGCAT 1 cut(s) 380
MscI TGGCCA 1 cut(s) 1137
MseI TTAA 3 cut(s) 510, 672, 1562
MslI CAYNNNNRTG 3 cut(s) 554, 775, 1612
Msp20I TGGCCA 1 cut(s) 1137
MspA1I CMGCKG 1 cut(s) 1403
MspI CCGG 3 cut(s) 400, 537, 1383
MspR9I CCNGG 2 cut(s) 401, 756
MunI CAATTG 2 cut(s) 1305, 1479
MvaI CCWGG 1 cut(s) 756
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 6 cut(s) 345, 401, 905, 914, 1437, 1587
NciI CCSGG 1 cut(s) 401
NdeI CATATG 2 cut(s) 943, 1613
NlaIII CATG 9 cut(s) 48, 202, 232, 244, 616, 763, 1203, 1585, 1596
NlaIV GGNNCC 2 cut(s) 570, 1296
NmuCI GTSAC 5 cut(s) 605, 646, 1183, 1247, 1720
NsiI ATGCAT 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 1026
PfeI GAWTC 1 cut(s) 1523
PleI GAGTC 2 cut(s) 279, 602
PmaCI CACGTG 1 cut(s) 773
PmlI CACGTG 1 cut(s) 773
PpsI GAGTC 2 cut(s) 279, 602
Ppu21I YACGTR 1 cut(s) 773
PshAI GACNNNNGTC 1 cut(s) 1718
PsiI TTATAA 1 cut(s) 1686
Psp6I CCWGG 1 cut(s) 754
PspCI CACGTG 1 cut(s) 773
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 570, 1296
PspPI GGNCC 2 cut(s) 568, 1430
PstI CTGCAG 1 cut(s) 1402
PstNI CAGNNNCTG 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 1403
RsaI GTAC 1 cut(s) 1056
RsaNI GTAC 1 cut(s) 1055
RseI CAYNNNNRTG 3 cut(s) 554, 775, 1612
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 3 cut(s) 510, 672, 1562
Sau96I GGNCC 2 cut(s) 568, 1430
SchI GAGTC 2 cut(s) 279, 602
ScrFI CCNGG 2 cut(s) 401, 756
SduI GDGCHC 4 cut(s) 406, 561, 784, 1038
SfaNI GCATC 3 cut(s) 326, 351, 387
SfcI CTRYAG 3 cut(s) 1120, 1398, 1597
SmiMI CAYNNNNRTG 3 cut(s) 554, 775, 1612
SmlI CTYRAG 1 cut(s) 799
SmoI CTYRAG 1 cut(s) 799
SpeI ACTAGT 2 cut(s) 1172, 1282
Sse9I AATT 4 cut(s) 922, 937, 1305, 1479
SsiI CCGC 2 cut(s) 38, 447
SspMI CTAG 6 cut(s) 518, 638, 1025, 1044, 1173, 1283
StyD4I CCNGG 2 cut(s) 399, 754
TaaI ACNGT 4 cut(s) 361, 424, 1021, 1163
TaiI ACGT 3 cut(s) 775, 811, 1060
TaqI TCGA 2 cut(s) 14, 1060
TasI AATT 4 cut(s) 922, 937, 1305, 1479
TauI GCSGC 2 cut(s) 41, 449
TfiI GAWTC 1 cut(s) 1523
Tru1I TTAA 3 cut(s) 510, 672, 1562
Tru9I TTAA 3 cut(s) 510, 672, 1562
TscAI CASTG 4 cut(s) 850, 1026, 1342, 1557
TseFI GTSAC 5 cut(s) 605, 646, 1183, 1247, 1720
TseI GCWGC 8 cut(s) 130, 233, 339, 1048, 1085, 1348, 1400, 1508
Tsp45I GTSAC 5 cut(s) 605, 646, 1183, 1247, 1720
TspDTI ATGAA 8 cut(s) 81, 217, 229, 851, 930, 1188, 1303, 1600
TspGWI ACGGA 2 cut(s) 551, 1548
TspRI CASTG 4 cut(s) 850, 1026, 1342, 1557
XapI RAATTY 1 cut(s) 922
XmiI GTMKAC 2 cut(s) 954, 1119
XspI CTAG 6 cut(s) 518, 638, 1025, 1044, 1173, 1283
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.