Rh7BG275100

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
25548554 .. 25554845
6292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG275100.1

Sequence Viewer

Length: 1410 bp
ATGTTTCTTCTGTGTTTGTTGGCTGGGTGTAGCATCTGTTGGTTCAACACAGTATGCTTCGTTCTTTGCATTCGGAATTTTCCGGCTAATCAACCCTTAGCAATATCACTCACAGTGAGCTTCAACGGTGTAAGTGCGGCCTTATACAACCTCGCTGCAGATGCAATTGACTCCTCTTCTACTTCTTTATATCTCATTTTGAATGCTGTCATTCCCCTTCTCACTTCTGTAGCAGCATTGATTCCGATTCTCCGACAACCCTCTCTCGACCCCCTTCCACCTGATGGAGTTCGTCGTGACTCCGTCATTTTTCTCTTTTTGAATATCCTAGCTGTTCTAACTGGCATTTACCTTCTTCTCTTTGGTTCGTCCTCTTTTGACACAGCAACTGCTCGCGTCTTCTTGGGTGGAGCCGTTTTCCTACTCATTTTCCCTTTGTGTATTCCTGGCATTGTCTATGCTCGGGACTGGTTTCGTCGTGCCATTCACTCCAACATCCGCATTGAAGGTTCAGGCTTCATTCTTGTCGATGTAGATGATCTAGAGCTTCACAAAGAGCTGCTGAGCCGCGAGCCTAGTATTTATGGGAATGGATCGCTTTCTCACCCTTTGGTCAGTAATGGTGCATCTGCTGAAAGTTTGTCATTTCGAAACAAGAGTGCAGAGTACACAGGGTGTTGTGGAACAATTGTGGGAAAGGATCAATTGGCAATGCTTGGAGAAGAGCACTCGGCAAGATTGCTTGTGAGAAGGTTGGATTTTTGGCTATACTACATTGCATACTTTTGTGGGGGTACCATTGGTCTTGTTTACAGTAACAATCTTGGACAGATAGCTCAATCATTAGGGCAGAGCTCCAATACCACAACACTTGTGACTCTCTATTCATCCTTCTCATTCTTTGGCCGGTTGCTATCAGCTATACCCGACTACATACGAGCGAAGTTCTATTTTGCAAGGACAGGGTGGCTAACCATAGCACTTTTGCCAACCCCAGTTGCTTTCATATTGCTTGCTGCATCAGGCAGTACCATGGCTTTGCACGCTGGCACTGCACTGATCGGATTGAGCTCTGGCTTCATTTTTGCTGCTGCTGTTTCCATTACATCAGAGTTGTTCGGGCCTAACAGCGTAGGTGTCAATCACAACATTCTGATTACAAACATACCACTCGGTTCACTTGTTTATGGTTTTCTAGCTGCAATTGTTTACGATGCCAATGTAAGCACAGGCCTCAACATCTTAACAGCTGATACAATAGTGTGCATGGGGAGGAACTGCTATTTTCTAACATTTGTGTGGTGGGCGTGCATATCTGTTTTGGGGCTAGCTTCAAGTGTGCTCTTATTCTTAAGAACTAGACATGCCTATGACCATTTCGAGCATAATCGCTCCACGCAACTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

50.87

Weight (kDa)

6.74

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 1 - 149 1.4e-36 Nodulin-like
NFD4_C PF23262 241 - 457 5.8e-50 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 794
AccB7I CCANNNNNTGG 1 cut(s) 284
AccII CGCG 2 cut(s) 396, 570
AciI CCGC 3 cut(s) 137, 499, 568
AclWI GGATC 2 cut(s) 601, 708
AcoI YGGCCR 1 cut(s) 904
AcsI RAATTY 1 cut(s) 76
AdeI CACNNNGTG 1 cut(s) 675
AfaI GTAC 3 cut(s) 668, 796, 1030
AfiI CCNNNNNNNGG 1 cut(s) 284
AflII CTTAAG 1 cut(s) 1351
AgsI TTSAA 6 cut(s) 46, 124, 202, 322, 506, 1335
AjnI CCWGG 1 cut(s) 445
Alw21I GWGCWC 4 cut(s) 729, 857, 1073, 1344
AlwI GGATC 2 cut(s) 601, 708
AlwNI CAGNNNCTG 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 4 cut(s) 138, 904, 1121, 1231
ApeKI GCWGC 7 cut(s) 155, 233, 559, 1016, 1088, 1091, 1199
ApoI RAATTY 1 cut(s) 76
Asp718I GGTACC 1 cut(s) 794
AspS9I GGNCC 1 cut(s) 1121
AsuHPI GGTGA 1 cut(s) 596
AsuII TTCGAA 1 cut(s) 649
AsuNHI GCTAGC 1 cut(s) 1327
AvaI CYCGRG 1 cut(s) 462
BaeI ACNNNNGTAYC 2 cut(s) 1245, 1278
BanI GGYRCC 1 cut(s) 794
BanII GRGCYC 2 cut(s) 857, 1073
BbsI GAAGAC 1 cut(s) 391
Bbv12I GWGCWC 4 cut(s) 729, 857, 1073, 1344
BbvI GCAGC 7 cut(s) 142, 245, 546, 1003, 1075, 1078, 1186
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 398
BciT130I CCWGG 1 cut(s) 447
BfaI CTAG 6 cut(s) 329, 542, 576, 1196, 1328, 1359
BfmI CTRYAG 2 cut(s) 156, 228
BfrI CTTAAG 1 cut(s) 1351
BisI GCNGC 9 cut(s) 138, 156, 234, 560, 568, 1017, 1089, 1092, 1200
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 9 cut(s) 139, 157, 235, 561, 569, 1018, 1090, 1093, 1201
Bme1390I CCNGG 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 1121
BmiI GGNNCC 2 cut(s) 412, 796
BmrFI CCNGG 1 cut(s) 447
BmrI ACTGGG 1 cut(s) 989
BmsI GCATC 5 cut(s) 42, 151, 635, 1028, 1204
BmtI GCTAGC 1 cut(s) 1331
BmuI ACTGGG 1 cut(s) 989
BpiI GAAGAC 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 97
Bpu1102I GCTNAGC 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 649
BsaJI CCNNGG 1 cut(s) 1032
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse118I RCCGGY 1 cut(s) 906
Bse1I ACTGG 3 cut(s) 346, 473, 995
Bse3DI GCAATG 2 cut(s) 717, 774
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 1032
BseGI GGATG 2 cut(s) 495, 887
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 2 cut(s) 717, 774
BseMII CTCAG 1 cut(s) 554
BseNI ACTGG 3 cut(s) 346, 473, 995
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 7 cut(s) 142, 245, 546, 1003, 1075, 1078, 1186
BseYI CCCAGC 1 cut(s) 23
BsgI GTGCAG 2 cut(s) 681, 1038
Bsh1236I CGCG 2 cut(s) 396, 570
BshFI GGCC 4 cut(s) 140, 906, 1123, 1233
BshNI GGYRCC 1 cut(s) 794
BsiHKAI GWGCWC 4 cut(s) 729, 857, 1073, 1344
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 2 cut(s) 83, 907
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 2 cut(s) 69, 208
BsnI GGCC 4 cut(s) 140, 906, 1123, 1233
BsoBI CYCGRG 1 cut(s) 462
Bsp119I TTCGAA 1 cut(s) 649
Bsp1286I GDGCHC 4 cut(s) 729, 857, 1073, 1344
Bsp143I GATC 4 cut(s) 538, 593, 700, 1059
Bsp1720I GCTNAGC 1 cut(s) 563
Bsp19I CCATGG 1 cut(s) 1032
BspACI CCGC 3 cut(s) 137, 499, 568
BspANI GGCC 4 cut(s) 140, 906, 1123, 1233
BspCNI CTCAG 1 cut(s) 555
BspFNI CGCG 2 cut(s) 396, 570
BspLI GGNNCC 2 cut(s) 412, 796
BspMAI CTGCAG 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 1331
BspPI GGATC 2 cut(s) 601, 708
BspQI GCTCTTC 1 cut(s) 717
BspT104I TTCGAA 1 cut(s) 649
BspT107I GGYRCC 1 cut(s) 794
BspTI CTTAAG 1 cut(s) 1351
BsrDI GCAATG 2 cut(s) 717, 774
BsrFI RCCGGY 1 cut(s) 906
BsrI ACTGG 3 cut(s) 346, 473, 995
BssAI RCCGGY 1 cut(s) 906
BssECI CCNNGG 1 cut(s) 1032
BssMI GATC 4 cut(s) 538, 593, 700, 1059
BssT1I CCWWGG 1 cut(s) 1032
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 5 cut(s) 52, 115, 128, 815, 1404
Bst6I CTCTTC 2 cut(s) 181, 717
BstAFI CTTAAG 1 cut(s) 1351
BstBI TTCGAA 1 cut(s) 649
BstC8I GCNNGC 7 cut(s) 394, 572, 1014, 1044, 1048, 1309, 1329
BstDEI CTNAG 2 cut(s) 97, 563
BstDSI CCRYGG 1 cut(s) 1032
BstF5I GGATG 2 cut(s) 495, 887
BstFNI CGCG 2 cut(s) 396, 570
BstKTI GATC 4 cut(s) 541, 596, 703, 1062
BstMBI GATC 4 cut(s) 538, 593, 700, 1059
BstMWI GCNNNNNNNGC 3 cut(s) 161, 1043, 1052
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 1367
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 2 cut(s) 156, 228
BstUI CGCG 2 cut(s) 396, 570
BstV1I GCAGC 7 cut(s) 142, 245, 546, 1003, 1075, 1078, 1186
BstV2I GAAGAC 1 cut(s) 391
BsuRI GGCC 4 cut(s) 140, 906, 1123, 1233
BtgI CCRYGG 1 cut(s) 1032
BtsCI GGATG 2 cut(s) 495, 887
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 3 cut(s) 120, 1050, 1055
Cac8I GCNNGC 7 cut(s) 394, 572, 1014, 1044, 1048, 1309, 1329
CaiI CAGNNNCTG 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 906
Cfr13I GGNCC 1 cut(s) 1121
CseI GACGC 1 cut(s) 385
Csp6I GTAC 3 cut(s) 667, 795, 1029
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 3 cut(s) 1033, 1267, 1364
CviQI GTAC 3 cut(s) 667, 795, 1029
DdeI CTNAG 2 cut(s) 97, 563
DpnI GATC 4 cut(s) 540, 595, 702, 1061
DpnII GATC 4 cut(s) 538, 593, 700, 1059
DraIII CACNNNGTG 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 904
Eam1104I CTCTTC 2 cut(s) 181, 717
EarI CTCTTC 2 cut(s) 181, 717
Ecl136II GAGCTC 2 cut(s) 855, 1071
Eco130I CCWWGG 1 cut(s) 1032
Eco147I AGGCCT 1 cut(s) 1233
Eco24I GRGCYC 2 cut(s) 857, 1073
Eco53kI GAGCTC 2 cut(s) 855, 1071
Eco88I CYCGRG 1 cut(s) 462
EcoICRI GAGCTC 2 cut(s) 855, 1071
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 1032
EcoT38I GRGCYC 2 cut(s) 857, 1073
ErhI CCWWGG 1 cut(s) 1032
FaeI CATG 3 cut(s) 1036, 1270, 1367
FaqI GGGAC 1 cut(s) 479
FatI CATG 3 cut(s) 1032, 1266, 1363
Fnu4HI GCNGC 9 cut(s) 138, 156, 234, 560, 568, 1017, 1089, 1092, 1200
FokI GGATG 2 cut(s) 482, 874
FriOI GRGCYC 2 cut(s) 857, 1073
Fsp4HI GCNGC 9 cut(s) 138, 156, 234, 560, 568, 1017, 1089, 1092, 1200
FspBI CTAG 6 cut(s) 329, 542, 576, 1196, 1328, 1359
GluI GCNGC 9 cut(s) 138, 156, 234, 560, 568, 1017, 1089, 1092, 1200
GsaI CCCAGC 1 cut(s) 27
HaeIII GGCC 4 cut(s) 140, 906, 1123, 1233
HapII CCGG 2 cut(s) 83, 907
HgaI GACGC 1 cut(s) 385
Hin1II CATG 3 cut(s) 1036, 1270, 1367
HinfI GANTC 5 cut(s) 170, 241, 247, 299, 877
HpaII CCGG 2 cut(s) 83, 907
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 4 cut(s) 669, 811, 1178, 1210
Hpy188I TCNGA 6 cut(s) 75, 246, 254, 1064, 1111, 1155
Hpy188III TCNNGA 4 cut(s) 266, 296, 464, 542
Hpy8I GTNNAC 4 cut(s) 669, 811, 1178, 1210
Hpy99I CGWCG 2 cut(s) 297, 480
HpyAV CCTTC 6 cut(s) 227, 284, 362, 500, 744, 901
HpyCH4III ACNGT 5 cut(s) 52, 115, 128, 815, 1404
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 1043, 1052
HpyF3I CTNAG 2 cut(s) 97, 563
Hsp92II CATG 3 cut(s) 1036, 1270, 1367
KpnI GGTACC 1 cut(s) 798
Kzo9I GATC 4 cut(s) 538, 593, 700, 1059
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 3 cut(s) 410, 860, 1397
Lsp1109I GCAGC 7 cut(s) 142, 245, 546, 1003, 1075, 1078, 1186
LweI GCATC 5 cut(s) 42, 151, 635, 1028, 1204
MaeI CTAG 6 cut(s) 329, 542, 576, 1196, 1328, 1359
MaeIII GTNAC 3 cut(s) 296, 815, 874
MalI GATC 4 cut(s) 540, 595, 702, 1061
MboI GATC 4 cut(s) 538, 593, 700, 1059
MboII GAAGA 4 cut(s) 168, 347, 391, 734
MfeI CAATTG 4 cut(s) 165, 687, 704, 1203
MhlI GDGCHC 4 cut(s) 729, 857, 1073, 1344
MluCI AATT 5 cut(s) 76, 165, 687, 704, 1203
MlyI GAGTC 3 cut(s) 164, 293, 871
MmeI TCCRAC 3 cut(s) 277, 516, 735
MnlI CCTC 6 cut(s) 161, 184, 271, 382, 1244, 1266
MseI TTAA 2 cut(s) 1244, 1352
MslI CAYNNNNRTG 2 cut(s) 1297, 1368
MspA1I CMGCKG 1 cut(s) 1250
MspCI CTTAAG 1 cut(s) 1351
MspI CCGG 2 cut(s) 83, 907
MspR9I CCNGG 1 cut(s) 447
MunI CAATTG 4 cut(s) 165, 687, 704, 1203
Mva1269I GAATGC 2 cut(s) 69, 208
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 2 cut(s) 396, 570
MwoI GCNNNNNNNGC 3 cut(s) 161, 1043, 1052
NcoI CCATGG 1 cut(s) 1032
NdeII GATC 4 cut(s) 538, 593, 700, 1059
NheI GCTAGC 1 cut(s) 1327
NlaIII CATG 3 cut(s) 1036, 1270, 1367
NlaIV GGNNCC 2 cut(s) 412, 796
NmeAIII GCCGAG 1 cut(s) 710
NmuCI GTSAC 2 cut(s) 296, 874
NspI RCATGY 1 cut(s) 1367
NspV TTCGAA 1 cut(s) 649
PceI AGGCCT 1 cut(s) 1233
PciSI GCTCTTC 1 cut(s) 717
PctI GAATGC 2 cut(s) 69, 208
PfeI GAWTC 2 cut(s) 241, 247
PflFI GACNNNGTC 1 cut(s) 302
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 9 cut(s) 139, 157, 235, 561, 569, 1018, 1090, 1093, 1201
PleI GAGTC 3 cut(s) 164, 293, 871
PpsI GAGTC 3 cut(s) 164, 293, 871
Psp124BI GAGCTC 2 cut(s) 857, 1073
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 412, 796
PspPI GGNCC 1 cut(s) 1121
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 389
PsyI GACNNNGTC 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 1250
RsaI GTAC 3 cut(s) 668, 796, 1030
RsaNI GTAC 3 cut(s) 667, 795, 1029
RseI CAYNNNNRTG 2 cut(s) 1297, 1368
SacI GAGCTC 2 cut(s) 857, 1073
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 2 cut(s) 1244, 1352
SatI GCNGC 9 cut(s) 138, 156, 234, 560, 568, 1017, 1089, 1092, 1200
Sau3AI GATC 4 cut(s) 538, 593, 700, 1059
Sau96I GGNCC 1 cut(s) 1121
SchI GAGTC 3 cut(s) 164, 293, 871
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 4 cut(s) 729, 857, 1073, 1344
SfaNI GCATC 5 cut(s) 42, 151, 635, 1028, 1204
SfcI CTRYAG 2 cut(s) 156, 228
SfuI TTCGAA 1 cut(s) 649
SmiMI CAYNNNNRTG 2 cut(s) 1297, 1368
SmlI CTYRAG 1 cut(s) 1351
SmoI CTYRAG 1 cut(s) 1351
Sse9I AATT 5 cut(s) 76, 165, 687, 704, 1203
SseBI AGGCCT 1 cut(s) 1233
SsiI CCGC 3 cut(s) 137, 499, 568
SspMI CTAG 6 cut(s) 329, 542, 576, 1196, 1328, 1359
SstI GAGCTC 2 cut(s) 857, 1073
StuI AGGCCT 1 cut(s) 1233
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 5 cut(s) 52, 115, 128, 815, 1404
TaqI TCGA 4 cut(s) 267, 528, 649, 1380
TasI AATT 5 cut(s) 76, 165, 687, 704, 1203
TatI WGTACW 1 cut(s) 666
TauI GCSGC 2 cut(s) 140, 570
TfiI GAWTC 2 cut(s) 241, 247
Tru1I TTAA 2 cut(s) 1244, 1352
Tru9I TTAA 2 cut(s) 1244, 1352
TscAI CASTG 3 cut(s) 120, 1057, 1062
TseFI GTSAC 2 cut(s) 296, 874
TseI GCWGC 7 cut(s) 155, 233, 559, 1016, 1088, 1091, 1199
Tsp45I GTSAC 2 cut(s) 296, 874
TspDTI ATGAA 4 cut(s) 508, 876, 994, 1069
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 3 cut(s) 120, 1057, 1062
Tth111I GACNNNGTC 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 1351
XapI RAATTY 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 541
XceI RCATGY 1 cut(s) 1367
XspI CTAG 6 cut(s) 329, 542, 576, 1196, 1328, 1359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.