Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002097

Physical Location & Seq

Genomic Coordinates Reverse (-)

30893799 .. 30897885

Gene Structure 4087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G013870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGTTGGACAATCAAGGAAATGGATGATACTCGTGGCAACAACATGGATTCAGGCATTTACGGGCACGAACTTCGACTTCTCGTCCTACTCCTCCGAATTGAAAACGGTTCTTGGGATATCTCAGGTGCAACTCAACTACCTTTCTGTGGCCTCAGACATGGGCAAGGCATTGGGGTGGTGTTCAGGTCTGTCCCTCATGTATTTTCCTTTGTGGGCTGTCATGTTCATGGCTGCCTTCATGGGTTTGTTTGGTTATGGTCTCCAATGGTTTGTCATTCAAAGAATGATCACCCTGCCCTATGTTCTGGTATTCCTTTTGTGTTTGTTGGCTGGATGTAGCATCTGCTGGTTCAATACAGTCTGCTATGTATTATGTATTCGGCACTTCCAAGCCAACCGGGCACTTGCATTGTCCCTAACAATTAGTTTCAATGGCGTAAGCGCAGCCCTCTACAGCCTCATTGCCAATGCAATAAACCCGGCTGATGACAACCTCTACCTCTTATTGAATGCAGTAGTTCCACTCTTCACATCTGGTGTTGCACTAATCCCTCTGCTTCGTCAACCGCCTTCAATTCAGCCACTGTCTCGTGAGGCTACTTATCGAGACTCTAGGATTTTTCTGTGCCTGAACATCCTAGCAGTGGTAACAGGCCTATATCTCCTCCTCCTCAACTCACTGTCCTCTAAGATATCAAATGCTCGAATTCTCTTGGTTGGTGCTATTTTTCTCCTGATCTTACCTCTATGTCTGCCTGGCATTGCATATGCTAGGGAGTGGGCTCGTCGAAACATGCCCTGGAGCTTCCAGAATGATGACTCGTCAAACTTCAATCTGGCCAACCCTGATGATCTTGAGCTCCATAAGGAACTCATTGCTGAAAATGAAAGTGGAAATGTGGTGAATGCCACTTCTTATGGGATGGTAGACAAGCAAGGTTGGTTATGGTGTTTTGGGAAGGTGATGGAGAAAGACAGGTTGACAGTGCTAGGGGAGGAACACTCTGCTCGGTTGCTCATACGCCGGTGGGATTTTTGGCTATACTATGCTGCATATTTTTGTGGCGGAACTATTGGATTGGTCTATAGCAACAATCTTGGGCAGATTTGTGAATCACTTGGATACGGTACCAAGACCAATTCTCTTGTCACACTATACTCTTCATGCTCCTTCTTTGGTCGTTTACTAGCAGCTTCCCCTGATTTCCTGCGCGAGTACGTATCTTCTACCATTAAGAAAGTTAATAAATCTAAATGCTTTTATAATTATGGAATCAGAAACACAATATGCCATAAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

434

Amino Acids

48.66

Weight (kDa)

8.76

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin-like	PF06813	7 - 253	9.6e-82	Nodulin-like
NFD4_C	PF23262	333 - 399	2.3e-18	NFD4, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19450 AT4G19450 AT5G45275
fragaria_vesca	FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730
malus_domestica	MD02G1233200.v1.1 MD06G1022100.v1.1 MD07G1080400.v1.1 MD16G1287800.v1.1
prunus_persica	Prupe.2G104800_v2.0.a1 Prupe.5G016300_v2.0.a1
pyrus_communis	pycom06g01600 pycom07g06400
rosa_chinensis	RchiOBHm_Chr1g0342361 RchiOBHm_Chr7g0214811
rosa_laevigata	RLG00000002719 RLG00000002720 RLG00000029156
rosa_multiflora	Rmu_co8462433.1_g000001 Rmu_sc0002308.1_g000032 Rmu_sc0012155.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245010 Rroxscaffold_4G00312980
rosa_rugosa	Rorug01G0151600.1 Rorug07G0147200 Rorug07G0147300 Rorug07G0147400
rosa_samantha	Rh1AG166000 Rh1BG132500 Rh1CG154600 Rh1DG167400 Rh7AG284200 Rh7BG275100 Rh7CG303600 Rh7DG287500
rosa_wichuraiana	Rw1G013870 Rw7G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1266
Acc65I	GGTACC	1 cut(s)	1130
AccB1I	GGYRCC	1 cut(s)	1130
AccI	GTMKAC	1 cut(s)	930
AccII	CGCG	1 cut(s)	1215
AciI	CCGC	2 cut(s)	569, 1068
AcoI	YGGCCR	1 cut(s)	840
AcsI	RAATTY	1 cut(s)	708
AfaI	GTAC	2 cut(s)	1132, 1220
AfiI	CCNNNNNNNGG	2 cut(s)	148, 646
AgsI	TTSAA	7 cut(s)	103, 281, 355, 433, 511, 576, 835
AhdI	GACNNNNNGTC	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	757, 800
AluBI	AGCT	4 cut(s)	807, 862, 1196, 1302
AluI	AGCT	4 cut(s)	807, 862, 1196, 1302
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	3 cut(s)	266, 594, 603
AlwNI	CAGNNNCTG	1 cut(s)	586
AoxI	GGCC	3 cut(s)	150, 655, 840
ApeKI	GCWGC	4 cut(s)	233, 446, 1052, 1193
ApoI	RAATTY	1 cut(s)	708
Asp718I	GGTACC	1 cut(s)	1130
AspLEI	GCGC	2 cut(s)	446, 1215
AsuC2I	CCSGG	2 cut(s)	401, 482
AsuHPI	GGTGA	3 cut(s)	283, 916, 976
BaeGI	GKGCMC	2 cut(s)	68, 406
BalI	TGGCCA	1 cut(s)	842
BanI	GGYRCC	1 cut(s)	1130
BanII	GRGCYC	2 cut(s)	787, 864
BauI	CACGAG	2 cut(s)	32, 591
Bbv12I	GWGCWC	1 cut(s)	864
BbvI	GCAGC	4 cut(s)	220, 458, 1039, 1205
BccI	CCATC	2 cut(s)	919, 961
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciT130I	CCWGG	2 cut(s)	759, 802
BciVI	GTATCC	1 cut(s)	1118
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	2 cut(s)	401, 482
BcoDI	GTCTC	3 cut(s)	266, 594, 603
BfaI	CTAG	5 cut(s)	615, 641, 774, 992, 1190
BfmI	CTRYAG	2 cut(s)	454, 1087
BfuI	GTATCC	1 cut(s)	1118
BglI	GCCNNNNNGGC	1 cut(s)	401
BisI	GCNGC	4 cut(s)	234, 447, 1053, 1194
BlsI	GCNGC	4 cut(s)	235, 448, 1054, 1195
Bme1390I	CCNGG	4 cut(s)	401, 482, 759, 802
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	1132
BmrFI	CCNGG	4 cut(s)	401, 482, 759, 802
BmsI	GCATC	1 cut(s)	351
BplI	GAGNNNNNCTC	2 cut(s)	989, 1021
BpmI	CTGGAG	1 cut(s)	823
BpuEI	CTTGAG	1 cut(s)	878
BpuMI	CCSGG	2 cut(s)	401, 482
BsaAI	YACGTR	1 cut(s)	1222
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 646
Bse118I	RCCGGY	1 cut(s)	1026
Bse3DI	GCAATG	3 cut(s)	462, 762, 876
BseBI	CCWGG	2 cut(s)	759, 802
BseDI	CCNNGG	1 cut(s)	800
BseGI	GGATG	4 cut(s)	30, 341, 636, 930
BseLI	CCNNNNNNNGG	2 cut(s)	148, 646
BseMI	GCAATG	3 cut(s)	462, 762, 876
BseMII	CTCAG	2 cut(s)	137, 168
BseRI	GAGGAG	4 cut(s)	82, 656, 659, 662
BseSI	GKGCMC	2 cut(s)	68, 406
BseXI	GCAGC	4 cut(s)	220, 458, 1039, 1205
Bsh1236I	CGCG	1 cut(s)	1215
BshFI	GGCC	3 cut(s)	152, 657, 842
BshNI	GGYRCC	1 cut(s)	1130
BsiHKAI	GWGCWC	1 cut(s)	864
BsiSI	CCGG	3 cut(s)	400, 482, 1027
BslFI	GGGAC	2 cut(s)	178, 400
BslI	CCNNNNNNNGG	2 cut(s)	148, 646
BsmAI	GTCTC	3 cut(s)	266, 594, 603
BsmFI	GGGAC	2 cut(s)	178, 400
BsmI	GAATGC	2 cut(s)	517, 913
BsnI	GGCC	3 cut(s)	152, 657, 842
Bso31I	GGTCTC	1 cut(s)	266
Bsp1286I	GDGCHC	4 cut(s)	68, 406, 787, 864
Bsp143I	GATC	3 cut(s)	288, 738, 853
BspACI	CCGC	2 cut(s)	569, 1068
BspANI	GGCC	3 cut(s)	152, 657, 842
BspCNI	CTCAG	2 cut(s)	136, 167
BspFNI	CGCG	1 cut(s)	1215
BspLI	GGNNCC	1 cut(s)	1132
BspT107I	GGYRCC	1 cut(s)	1130
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	3 cut(s)	462, 762, 876
BsrFI	RCCGGY	1 cut(s)	1026
BssAI	RCCGGY	1 cut(s)	1026
BssECI	CCNNGG	1 cut(s)	800
BssMI	GATC	3 cut(s)	288, 738, 853
BssSI	CACGAG	2 cut(s)	32, 591
Bst2BI	CACGAG	2 cut(s)	32, 591
Bst2UI	CCWGG	2 cut(s)	759, 802
Bst4CI	ACNGT	6 cut(s)	109, 361, 588, 684, 988, 1130
Bst6I	CTCTTC	2 cut(s)	533, 1168
BstBAI	YACGTR	1 cut(s)	1222
BstDEI	CTNAG	3 cut(s)	123, 154, 690
BstF5I	GGATG	4 cut(s)	30, 341, 636, 930
BstFNI	CGCG	1 cut(s)	1215
BstHHI	GCGC	2 cut(s)	446, 1215
BstKTI	GATC	3 cut(s)	291, 741, 856
BstMAI	GTCTC	3 cut(s)	266, 594, 603
BstMBI	GATC	3 cut(s)	288, 738, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 1299
BstNI	CCWGG	2 cut(s)	759, 802
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	4 cut(s)	399, 480, 757, 800
BstSFI	CTRYAG	2 cut(s)	454, 1087
BstSLI	GKGCMC	2 cut(s)	68, 406
BstSNI	TACGTA	1 cut(s)	1222
BstUI	CGCG	1 cut(s)	1215
BstV1I	GCAGC	4 cut(s)	220, 458, 1039, 1205
BsuI	GTATCC	1 cut(s)	1118
BsuRI	GGCC	3 cut(s)	152, 657, 842
BtsCI	GGATG	4 cut(s)	30, 341, 636, 930
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	4 cut(s)	584, 651, 680, 993
CaiI	CAGNNNCTG	1 cut(s)	586
CfoI	GCGC	2 cut(s)	446, 1215
Cfr10I	RCCGGY	1 cut(s)	1026
Csp6I	GTAC	2 cut(s)	1131, 1219
CviAII	CATG	8 cut(s)	45, 160, 199, 223, 229, 241, 796, 1167
CviQI	GTAC	2 cut(s)	1131, 1219
DdeI	CTNAG	3 cut(s)	123, 154, 690
DpnI	GATC	3 cut(s)	290, 740, 855
DpnII	GATC	3 cut(s)	288, 738, 853
DriI	GACNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	840
Eam1104I	CTCTTC	2 cut(s)	533, 1168
Eam1105I	GACNNNNNGTC	1 cut(s)	82
EarI	CTCTTC	2 cut(s)	533, 1168
EciI	GGCGGA	1 cut(s)	1083
Ecl136II	GAGCTC	1 cut(s)	862
Eco105I	TACGTA	1 cut(s)	1222
Eco147I	AGGCCT	1 cut(s)	657
Eco24I	GRGCYC	2 cut(s)	787, 864
Eco31I	GGTCTC	1 cut(s)	266
Eco32I	GATATC	2 cut(s)	120, 696
Eco53kI	GAGCTC	1 cut(s)	862
EcoICRI	GAGCTC	1 cut(s)	862
EcoRI	GAATTC	1 cut(s)	708
EcoRII	CCWGG	2 cut(s)	757, 800
EcoRV	GATATC	2 cut(s)	120, 696
EcoT38I	GRGCYC	2 cut(s)	787, 864
FaeI	CATG	8 cut(s)	48, 163, 202, 226, 232, 244, 799, 1170
FaqI	GGGAC	2 cut(s)	178, 400
FatI	CATG	8 cut(s)	44, 159, 198, 222, 228, 240, 795, 1166
FauNDI	CATATG	1 cut(s)	769
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	930
Fnu4HI	GCNGC	4 cut(s)	234, 447, 1053, 1194
FokI	GGATG	4 cut(s)	37, 348, 623, 937
FriOI	GRGCYC	2 cut(s)	787, 864
Fsp4HI	GCNGC	4 cut(s)	234, 447, 1053, 1194
FspBI	CTAG	5 cut(s)	615, 641, 774, 992, 1190
GlaI	GCGC	2 cut(s)	445, 1214
GluI	GCNGC	4 cut(s)	234, 447, 1053, 1194
GsuI	CTGGAG	1 cut(s)	823
HaeIII	GGCC	3 cut(s)	152, 657, 842
HapII	CCGG	3 cut(s)	400, 482, 1027
HhaI	GCGC	2 cut(s)	446, 1215
Hin1II	CATG	8 cut(s)	48, 163, 202, 226, 232, 244, 799, 1170
Hin6I	GCGC	2 cut(s)	444, 1213
HinP1I	GCGC	2 cut(s)	444, 1213
HincII	GTYRAC	2 cut(s)	566, 984
HindII	GTYRAC	2 cut(s)	566, 984
HinfI	GANTC	5 cut(s)	49, 611, 821, 1115, 1275
HpaII	CCGG	3 cut(s)	400, 482, 1027
HphI	GGTGA	3 cut(s)	283, 916, 976
Hpy166II	GTNNAC	4 cut(s)	566, 931, 984, 1187
Hpy188I	TCNGA	3 cut(s)	97, 157, 1280
Hpy188III	TCNNGA	5 cut(s)	593, 608, 736, 811, 857
Hpy8I	GTNNAC	4 cut(s)	566, 931, 984, 1187
Hpy99I	CGWCG	1 cut(s)	792
HpyAV	CCTTC	4 cut(s)	247, 582, 955, 1183
HpyCH4III	ACNGT	6 cut(s)	109, 361, 588, 684, 988, 1130
HpyCH4IV	ACGT	1 cut(s)	1221
HpyCH4V	TGCA	7 cut(s)	130, 410, 473, 515, 545, 767, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 1299
HpyF3I	CTNAG	3 cut(s)	123, 154, 690
HpySE526I	ACGT	1 cut(s)	1221
Hsp92II	CATG	8 cut(s)	48, 163, 202, 226, 232, 244, 799, 1170
HspAI	GCGC	2 cut(s)	444, 1213
KpnI	GGTACC	1 cut(s)	1134
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	288, 738, 853
LmnI	GCTCC	3 cut(s)	804, 867, 1175
Lsp1109I	GCAGC	4 cut(s)	220, 458, 1039, 1205
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	5 cut(s)	615, 641, 774, 992, 1190
MaeII	ACGT	1 cut(s)	1221
MaeIII	GTNAC	2 cut(s)	649, 1150
MalI	GATC	3 cut(s)	290, 740, 855
MboI	GATC	3 cut(s)	288, 738, 853
MboII	GAAGA	3 cut(s)	520, 1155, 1218
MhlI	GDGCHC	4 cut(s)	68, 406, 787, 864
MlsI	TGGCCA	1 cut(s)	842
MluCI	AATT	6 cut(s)	98, 423, 576, 708, 1141, 1267
MluNI	TGGCCA	1 cut(s)	842
MlyI	GAGTC	2 cut(s)	605, 815
Mox20I	TGGCCA	1 cut(s)	842
MscI	TGGCCA	1 cut(s)	842
MseI	TTAA	2 cut(s)	1236, 1245
MslI	CAYNNNNRTG	2 cut(s)	175, 227
Msp20I	TGGCCA	1 cut(s)	842
MspI	CCGG	3 cut(s)	400, 482, 1027
MspR9I	CCNGG	4 cut(s)	401, 482, 759, 802
Mva1269I	GAATGC	2 cut(s)	517, 913
MvaI	CCWGG	2 cut(s)	759, 802
MvnI	CGCG	1 cut(s)	1215
MwoI	GCNNNNNNNGC	2 cut(s)	401, 1299
NciI	CCSGG	2 cut(s)	401, 482
NdeI	CATATG	1 cut(s)	769
NdeII	GATC	3 cut(s)	288, 738, 853
NlaIII	CATG	8 cut(s)	48, 163, 202, 226, 232, 244, 799, 1170
NlaIV	GGNNCC	1 cut(s)	1132
NmuCI	GTSAC	1 cut(s)	1150
NspI	RCATGY	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	657
PctI	GAATGC	2 cut(s)	517, 913
PfeI	GAWTC	3 cut(s)	49, 1115, 1275
PkrI	GCNGC	4 cut(s)	235, 448, 1054, 1195
PleI	GAGTC	2 cut(s)	605, 815
PpsI	GAGTC	2 cut(s)	605, 815
Ppu21I	YACGTR	1 cut(s)	1222
PsiI	TTATAA	1 cut(s)	1266
Psp124BI	GAGCTC	1 cut(s)	864
Psp6I	CCWGG	2 cut(s)	757, 800
PspGI	CCWGG	2 cut(s)	757, 800
PspN4I	GGNNCC	1 cut(s)	1132
PstNI	CAGNNNCTG	1 cut(s)	586
RsaI	GTAC	2 cut(s)	1132, 1220
RsaNI	GTAC	2 cut(s)	1131, 1219
RseI	CAYNNNNRTG	2 cut(s)	175, 227
SacI	GAGCTC	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	1236, 1245
SatI	GCNGC	4 cut(s)	234, 447, 1053, 1194
Sau3AI	GATC	3 cut(s)	288, 738, 853
SchI	GAGTC	2 cut(s)	605, 815
ScrFI	CCNGG	4 cut(s)	401, 482, 759, 802
SduI	GDGCHC	4 cut(s)	68, 406, 787, 864
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	2 cut(s)	454, 1087
SgrAI	CRCCGGYG	1 cut(s)	1026
SmiMI	CAYNNNNRTG	2 cut(s)	175, 227
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SnaBI	TACGTA	1 cut(s)	1222
Sse9I	AATT	6 cut(s)	98, 423, 576, 708, 1141, 1267
SseBI	AGGCCT	1 cut(s)	657
SsiI	CCGC	2 cut(s)	569, 1068
SspMI	CTAG	5 cut(s)	615, 641, 774, 992, 1190
SstI	GAGCTC	1 cut(s)	864
StuI	AGGCCT	1 cut(s)	657
StyD4I	CCNGG	4 cut(s)	399, 480, 757, 800
TaaI	ACNGT	6 cut(s)	109, 361, 588, 684, 988, 1130
TaiI	ACGT	1 cut(s)	1224
TaqI	TCGA	4 cut(s)	75, 607, 706, 790
TasI	AATT	6 cut(s)	98, 423, 576, 708, 1141, 1267
TfiI	GAWTC	3 cut(s)	49, 1115, 1275
Tru1I	TTAA	2 cut(s)	1236, 1245
Tru9I	TTAA	2 cut(s)	1236, 1245
TscAI	CASTG	4 cut(s)	591, 651, 687, 993
TseFI	GTSAC	1 cut(s)	1150
TseI	GCWGC	4 cut(s)	233, 446, 1052, 1193
Tsp45I	GTSAC	1 cut(s)	1150
TspDTI	ATGAA	4 cut(s)	217, 229, 903, 1155
TspRI	CASTG	4 cut(s)	591, 651, 687, 993
XapI	RAATTY	1 cut(s)	708
XceI	RCATGY	1 cut(s)	799
XmiI	GTMKAC	1 cut(s)	930
XspI	CTAG	5 cut(s)	615, 641, 774, 992, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.