Nodulin-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G19450 AT4G19450 AT5G45275 |
| fragaria_vesca | FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 |
| malus_domestica | MD02G1233200.v1.1 MD06G1022100.v1.1 MD07G1080400.v1.1 MD16G1287800.v1.1 |
| prunus_persica | Prupe.2G104800_v2.0.a1 Prupe.5G016300_v2.0.a1 |
| pyrus_communis | pycom06g01600 pycom07g06400 |
| rosa_chinensis | RchiOBHm_Chr1g0342361 RchiOBHm_Chr7g0214811 |
| rosa_laevigata | RLG00000002719 RLG00000002720 RLG00000029156 |
| rosa_multiflora | Rmu_co8462433.1_g000001 Rmu_sc0002308.1_g000032 Rmu_sc0012155.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00245010 Rroxscaffold_4G00312980 |
| rosa_rugosa | Rorug01G0151600.1 Rorug07G0147200 Rorug07G0147300 Rorug07G0147400 |
| rosa_samantha | Rh1AG166000 Rh1BG132500 Rh1CG154600 Rh1DG167400 Rh7AG284200 Rh7BG275100 Rh7CG303600 Rh7DG287500 |
| rosa_wichuraiana | Rw1G013870 Rw7G024250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 824, 955 |
| AccB1I | GGYRCC | 2 cut(s) | 824, 955 |
| AccI | GTMKAC | 2 cut(s) | 259, 624 |
| AccII | CGCG | 2 cut(s) | 909, 1103 |
| AciI | CCGC | 4 cut(s) | 341, 762, 1064, 1103 |
| AcoI | YGGCCR | 2 cut(s) | 177, 534 |
| AcsI | RAATTY | 1 cut(s) | 402 |
| AfaI | GTAC | 2 cut(s) | 826, 957 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 340 |
| AgsI | TTSAA | 4 cut(s) | 49, 127, 205, 529 |
| AjnI | CCWGG | 3 cut(s) | 308, 451, 494 |
| AluBI | AGCT | 8 cut(s) | 501, 556, 890, 1041, 1084, 1172, 1200, 1340 |
| AluI | AGCT | 8 cut(s) | 501, 556, 890, 1041, 1084, 1172, 1200, 1340 |
| Alw21I | GWGCWC | 1 cut(s) | 558 |
| Alw26I | GTCTC | 2 cut(s) | 288, 297 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 280 |
| AoxI | GGCC | 5 cut(s) | 177, 349, 534, 1091, 1159 |
| ApeKI | GCWGC | 7 cut(s) | 140, 338, 746, 887, 1061, 1169, 1340 |
| ApoI | RAATTY | 1 cut(s) | 402 |
| Asp718I | GGTACC | 2 cut(s) | 824, 955 |
| AspLEI | GCGC | 5 cut(s) | 140, 241, 909, 952, 1103 |
| AspS9I | GGNCC | 2 cut(s) | 1091, 1332 |
| AsuC2I | CCSGG | 4 cut(s) | 95, 176, 896, 1211 |
| AsuHPI | GGTGA | 3 cut(s) | 610, 670, 1120 |
| AvaII | GGWCC | 1 cut(s) | 1332 |
| BaeGI | GKGCMC | 1 cut(s) | 100 |
| BalI | TGGCCA | 1 cut(s) | 536 |
| BanI | GGYRCC | 2 cut(s) | 824, 955 |
| BanII | GRGCYC | 2 cut(s) | 481, 558 |
| BauI | CACGAG | 1 cut(s) | 285 |
| Bbv12I | GWGCWC | 1 cut(s) | 558 |
| BbvI | GCAGC | 7 cut(s) | 152, 350, 733, 899, 1073, 1181, 1327 |
| BccI | CCATC | 2 cut(s) | 613, 655 |
| BciT130I | CCWGG | 3 cut(s) | 310, 453, 496 |
| BciVI | GTATCC | 1 cut(s) | 812 |
| BcnI | CCSGG | 4 cut(s) | 95, 176, 896, 1211 |
| BcoDI | GTCTC | 2 cut(s) | 288, 297 |
| BfaI | CTAG | 4 cut(s) | 335, 468, 686, 884 |
| BfmI | CTRYAG | 3 cut(s) | 781, 1059, 1258 |
| BfuI | GTATCC | 1 cut(s) | 812 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 95 |
| BisI | GCNGC | 7 cut(s) | 141, 339, 747, 888, 1062, 1170, 1341 |
| BlsI | GCNGC | 7 cut(s) | 142, 340, 748, 889, 1063, 1171, 1342 |
| Bme1390I | CCNGG | 7 cut(s) | 95, 176, 310, 453, 496, 896, 1211 |
| Bme18I | GGWCC | 1 cut(s) | 1332 |
| BmgT120I | GGNCC | 2 cut(s) | 1091, 1332 |
| BmiI | GGNNCC | 2 cut(s) | 826, 957 |
| BmrFI | CCNGG | 7 cut(s) | 95, 176, 310, 453, 496, 896, 1211 |
| BmrI | ACTGGG | 1 cut(s) | 942 |
| BmsI | GCATC | 2 cut(s) | 45, 1316 |
| BmuI | ACTGGG | 1 cut(s) | 942 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 683, 715, 1370 |
| BpmI | CTGGAG | 2 cut(s) | 292, 517 |
| BpuEI | CTTGAG | 1 cut(s) | 572 |
| BpuMI | CCSGG | 4 cut(s) | 95, 176, 896, 1211 |
| BsaJI | CCNNGG | 2 cut(s) | 494, 894 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 340 |
| Bse118I | RCCGGY | 1 cut(s) | 720 |
| Bse1I | ACTGG | 2 cut(s) | 834, 937 |
| Bse3DI | GCAATG | 4 cut(s) | 156, 456, 570, 1011 |
| BseBI | CCWGG | 3 cut(s) | 310, 453, 496 |
| BseDI | CCNNGG | 2 cut(s) | 494, 894 |
| BseGI | GGATG | 5 cut(s) | 35, 330, 624, 1119, 1134 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 340 |
| BseMI | GCAATG | 4 cut(s) | 156, 456, 570, 1011 |
| BseNI | ACTGG | 2 cut(s) | 834, 937 |
| BseRI | GAGGAG | 5 cut(s) | 350, 353, 356, 1142, 1375 |
| BseSI | GKGCMC | 1 cut(s) | 100 |
| BseX3I | CGGCCG | 1 cut(s) | 177 |
| BseXI | GCAGC | 7 cut(s) | 152, 350, 733, 899, 1073, 1181, 1327 |
| Bsh1236I | CGCG | 2 cut(s) | 909, 1103 |
| Bsh1285I | CGRYCG | 1 cut(s) | 180 |
| BshFI | GGCC | 5 cut(s) | 179, 351, 536, 1093, 1161 |
| BshNI | GGYRCC | 2 cut(s) | 824, 955 |
| BsiEI | CGRYCG | 1 cut(s) | 180 |
| BsiHKAI | GWGCWC | 1 cut(s) | 558 |
| BsiSI | CCGG | 6 cut(s) | 94, 176, 721, 896, 1017, 1210 |
| BslFI | GGGAC | 1 cut(s) | 94 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 340 |
| BsmAI | GTCTC | 2 cut(s) | 288, 297 |
| BsmFI | GGGAC | 1 cut(s) | 94 |
| BsmI | GAATGC | 2 cut(s) | 211, 607 |
| BsnI | GGCC | 5 cut(s) | 179, 351, 536, 1093, 1161 |
| Bsp1286I | GDGCHC | 3 cut(s) | 100, 481, 558 |
| Bsp143I | GATC | 3 cut(s) | 432, 547, 1029 |
| BspACI | CCGC | 4 cut(s) | 341, 762, 1064, 1103 |
| BspANI | GGCC | 5 cut(s) | 179, 351, 536, 1093, 1161 |
| BspFNI | CGCG | 2 cut(s) | 909, 1103 |
| BspLI | GGNNCC | 2 cut(s) | 826, 957 |
| BspMAI | CTGCAG | 1 cut(s) | 1063 |
| BspT107I | GGYRCC | 2 cut(s) | 824, 955 |
| BsrDI | GCAATG | 4 cut(s) | 156, 456, 570, 1011 |
| BsrFI | RCCGGY | 1 cut(s) | 720 |
| BsrI | ACTGG | 2 cut(s) | 834, 937 |
| BssAI | RCCGGY | 1 cut(s) | 720 |
| BssECI | CCNNGG | 2 cut(s) | 494, 894 |
| BssMI | GATC | 3 cut(s) | 432, 547, 1029 |
| BssSI | CACGAG | 1 cut(s) | 285 |
| Bst2BI | CACGAG | 1 cut(s) | 285 |
| Bst2UI | CCWGG | 3 cut(s) | 310, 453, 496 |
| Bst4CI | ACNGT | 5 cut(s) | 55, 282, 378, 682, 824 |
| Bst6I | CTCTTC | 2 cut(s) | 227, 862 |
| BstC8I | GCNNGC | 2 cut(s) | 942, 1014 |
| BstDEI | CTNAG | 2 cut(s) | 384, 1389 |
| BstF5I | GGATG | 5 cut(s) | 35, 330, 624, 1119, 1134 |
| BstFNI | CGCG | 2 cut(s) | 909, 1103 |
| BstHHI | GCGC | 5 cut(s) | 140, 241, 909, 952, 1103 |
| BstKTI | GATC | 3 cut(s) | 435, 550, 1032 |
| BstMAI | GTCTC | 2 cut(s) | 288, 297 |
| BstMBI | GATC | 3 cut(s) | 432, 547, 1029 |
| BstMCI | CGRYCG | 1 cut(s) | 180 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 95, 1090 |
| BstNI | CCWGG | 3 cut(s) | 310, 453, 496 |
| BstNSI | RCATGY | 1 cut(s) | 493 |
| BstSCI | CCNGG | 7 cut(s) | 93, 174, 308, 451, 494, 894, 1209 |
| BstSFI | CTRYAG | 3 cut(s) | 781, 1059, 1258 |
| BstSLI | GKGCMC | 1 cut(s) | 100 |
| BstUI | CGCG | 2 cut(s) | 909, 1103 |
| BstV1I | GCAGC | 7 cut(s) | 152, 350, 733, 899, 1073, 1181, 1327 |
| BstZI | CGGCCG | 1 cut(s) | 177 |
| BsuI | GTATCC | 1 cut(s) | 812 |
| BsuRI | GGCC | 5 cut(s) | 179, 351, 536, 1093, 1161 |
| BtsCI | GGATG | 5 cut(s) | 35, 330, 624, 1119, 1134 |
| BtsI | GCAGTG | 1 cut(s) | 1003 |
| BtsIMutI | CAGTG | 4 cut(s) | 278, 374, 687, 1003 |
| Cac8I | GCNNGC | 2 cut(s) | 942, 1014 |
| CaiI | CAGNNNCTG | 1 cut(s) | 280 |
| CfoI | GCGC | 5 cut(s) | 140, 241, 909, 952, 1103 |
| Cfr10I | RCCGGY | 1 cut(s) | 720 |
| Cfr13I | GGNCC | 2 cut(s) | 1091, 1332 |
| CseI | GACGC | 1 cut(s) | 1303 |
| Csp6I | GTAC | 2 cut(s) | 825, 956 |
| CviAII | CATG | 5 cut(s) | 490, 642, 861, 1243, 1254 |
| CviQI | GTAC | 2 cut(s) | 825, 956 |
| DdeI | CTNAG | 2 cut(s) | 384, 1389 |
| DpnI | GATC | 3 cut(s) | 434, 549, 1031 |
| DpnII | GATC | 3 cut(s) | 432, 547, 1029 |
| DraI | TTTAAA | 1 cut(s) | 1224 |
| EaeI | YGGCCR | 2 cut(s) | 177, 534 |
| EagI | CGGCCG | 1 cut(s) | 177 |
| Eam1104I | CTCTTC | 2 cut(s) | 227, 862 |
| EarI | CTCTTC | 2 cut(s) | 227, 862 |
| EciI | GGCGGA | 1 cut(s) | 777 |
| Ecl136II | GAGCTC | 1 cut(s) | 556 |
| EclXI | CGGCCG | 1 cut(s) | 177 |
| Eco147I | AGGCCT | 1 cut(s) | 351 |
| Eco24I | GRGCYC | 2 cut(s) | 481, 558 |
| Eco32I | GATATC | 1 cut(s) | 390 |
| Eco47I | GGWCC | 1 cut(s) | 1332 |
| Eco52I | CGGCCG | 1 cut(s) | 177 |
| Eco53kI | GAGCTC | 1 cut(s) | 556 |
| EcoICRI | GAGCTC | 1 cut(s) | 556 |
| EcoRI | GAATTC | 1 cut(s) | 402 |
| EcoRII | CCWGG | 3 cut(s) | 308, 451, 494 |
| EcoRV | GATATC | 1 cut(s) | 390 |
| EcoT38I | GRGCYC | 2 cut(s) | 481, 558 |
| FaeI | CATG | 5 cut(s) | 493, 645, 864, 1246, 1257 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 905, 937 |
| FaqI | GGGAC | 1 cut(s) | 94 |
| FatI | CATG | 5 cut(s) | 489, 641, 860, 1242, 1253 |
| FauI | CCCGC | 1 cut(s) | 1096 |
| FauNDI | CATATG | 2 cut(s) | 463, 1274 |
| FblI | GTMKAC | 2 cut(s) | 259, 624 |
| Fnu4HI | GCNGC | 7 cut(s) | 141, 339, 747, 888, 1062, 1170, 1341 |
| FokI | GGATG | 5 cut(s) | 42, 317, 631, 1106, 1121 |
| FriOI | GRGCYC | 2 cut(s) | 481, 558 |
| Fsp4HI | GCNGC | 7 cut(s) | 141, 339, 747, 888, 1062, 1170, 1341 |
| FspBI | CTAG | 4 cut(s) | 335, 468, 686, 884 |
| GlaI | GCGC | 5 cut(s) | 139, 240, 908, 951, 1102 |
| GluI | GCNGC | 7 cut(s) | 141, 339, 747, 888, 1062, 1170, 1341 |
| GsuI | CTGGAG | 2 cut(s) | 292, 517 |
| HaeIII | GGCC | 5 cut(s) | 179, 351, 536, 1093, 1161 |
| HapII | CCGG | 6 cut(s) | 94, 176, 721, 896, 1017, 1210 |
| HgaI | GACGC | 1 cut(s) | 1303 |
| HhaI | GCGC | 5 cut(s) | 140, 241, 909, 952, 1103 |
| Hin1II | CATG | 5 cut(s) | 493, 645, 864, 1246, 1257 |
| Hin6I | GCGC | 5 cut(s) | 138, 239, 907, 950, 1101 |
| HinP1I | GCGC | 5 cut(s) | 138, 239, 907, 950, 1101 |
| HincII | GTYRAC | 2 cut(s) | 260, 678 |
| HindII | GTYRAC | 2 cut(s) | 260, 678 |
| HinfI | GANTC | 6 cut(s) | 271, 305, 515, 809, 1184, 1379 |
| HpaII | CCGG | 6 cut(s) | 94, 176, 721, 896, 1017, 1210 |
| HphI | GGTGA | 3 cut(s) | 610, 670, 1120 |
| Hpy166II | GTNNAC | 5 cut(s) | 260, 625, 678, 881, 1111 |
| Hpy188I | TCNGA | 2 cut(s) | 270, 1081 |
| Hpy188III | TCNNGA | 6 cut(s) | 287, 302, 430, 505, 551, 1033 |
| Hpy8I | GTNNAC | 5 cut(s) | 260, 625, 678, 881, 1111 |
| Hpy99I | CGWCG | 2 cut(s) | 261, 486 |
| HpyAV | CCTTC | 5 cut(s) | 649, 877, 982, 1172, 1187 |
| HpyCH4III | ACNGT | 5 cut(s) | 55, 282, 378, 682, 824 |
| HpyCH4V | TGCA | 9 cut(s) | 104, 209, 461, 749, 926, 944, 1061, 1169, 1242 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 95, 1090 |
| HpyF3I | CTNAG | 2 cut(s) | 384, 1389 |
| Hsp92II | CATG | 5 cut(s) | 493, 645, 864, 1246, 1257 |
| HspAI | GCGC | 5 cut(s) | 138, 239, 907, 950, 1101 |
| KpnI | GGTACC | 2 cut(s) | 828, 959 |
| Kzo9I | GATC | 3 cut(s) | 432, 547, 1029 |
| LmnI | GCTCC | 3 cut(s) | 498, 561, 869 |
| Lsp1109I | GCAGC | 7 cut(s) | 152, 350, 733, 899, 1073, 1181, 1327 |
| LweI | GCATC | 2 cut(s) | 45, 1316 |
| MaeI | CTAG | 4 cut(s) | 335, 468, 686, 884 |
| MaeIII | GTNAC | 3 cut(s) | 343, 844, 1072 |
| MalI | GATC | 3 cut(s) | 434, 549, 1031 |
| MboI | GATC | 3 cut(s) | 432, 547, 1029 |
| MboII | GAAGA | 2 cut(s) | 214, 849 |
| MhlI | GDGCHC | 3 cut(s) | 100, 481, 558 |
| MlsI | TGGCCA | 1 cut(s) | 536 |
| MluCI | AATT | 2 cut(s) | 117, 402 |
| MluNI | TGGCCA | 1 cut(s) | 536 |
| MlyI | GAGTC | 3 cut(s) | 299, 509, 1388 |
| MmeI | TCCRAC | 1 cut(s) | 1212 |
| Mox20I | TGGCCA | 1 cut(s) | 536 |
| MscI | TGGCCA | 1 cut(s) | 536 |
| MseI | TTAA | 1 cut(s) | 1223 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1273 |
| Msp20I | TGGCCA | 1 cut(s) | 536 |
| MspA1I | CMGCKG | 2 cut(s) | 341, 1064 |
| MspI | CCGG | 6 cut(s) | 94, 176, 721, 896, 1017, 1210 |
| MspR9I | CCNGG | 7 cut(s) | 95, 176, 310, 453, 496, 896, 1211 |
| Mva1269I | GAATGC | 2 cut(s) | 211, 607 |
| MvaI | CCWGG | 3 cut(s) | 310, 453, 496 |
| MvnI | CGCG | 2 cut(s) | 909, 1103 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 95, 1090 |
| NciI | CCSGG | 4 cut(s) | 95, 176, 896, 1211 |
| NdeI | CATATG | 2 cut(s) | 463, 1274 |
| NdeII | GATC | 3 cut(s) | 432, 547, 1029 |
| NlaIII | CATG | 5 cut(s) | 493, 645, 864, 1246, 1257 |
| NlaIV | GGNNCC | 2 cut(s) | 826, 957 |
| NmuCI | GTSAC | 1 cut(s) | 844 |
| NspI | RCATGY | 1 cut(s) | 493 |
| PceI | AGGCCT | 1 cut(s) | 351 |
| PctI | GAATGC | 2 cut(s) | 211, 607 |
| PfeI | GAWTC | 3 cut(s) | 271, 809, 1184 |
| PfoI | TCCNGGA | 1 cut(s) | 308 |
| PkrI | GCNGC | 7 cut(s) | 142, 340, 748, 889, 1063, 1171, 1342 |
| PleI | GAGTC | 3 cut(s) | 299, 509, 1387 |
| PpsI | GAGTC | 3 cut(s) | 299, 509, 1387 |
| Psp124BI | GAGCTC | 1 cut(s) | 558 |
| Psp6I | CCWGG | 3 cut(s) | 308, 451, 494 |
| PspGI | CCWGG | 3 cut(s) | 308, 451, 494 |
| PspN4I | GGNNCC | 2 cut(s) | 826, 957 |
| PspPI | GGNCC | 2 cut(s) | 1091, 1332 |
| PstI | CTGCAG | 1 cut(s) | 1063 |
| PstNI | CAGNNNCTG | 1 cut(s) | 280 |
| RsaI | GTAC | 2 cut(s) | 826, 957 |
| RsaNI | GTAC | 2 cut(s) | 825, 956 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1273 |
| SacI | GAGCTC | 1 cut(s) | 558 |
| SalI | GTCGAC | 1 cut(s) | 258 |
| SaqAI | TTAA | 1 cut(s) | 1223 |
| SatI | GCNGC | 7 cut(s) | 141, 339, 747, 888, 1062, 1170, 1341 |
| Sau3AI | GATC | 3 cut(s) | 432, 547, 1029 |
| Sau96I | GGNCC | 2 cut(s) | 1091, 1332 |
| SchI | GAGTC | 3 cut(s) | 299, 509, 1388 |
| ScrFI | CCNGG | 7 cut(s) | 95, 176, 310, 453, 496, 896, 1211 |
| SduI | GDGCHC | 3 cut(s) | 100, 481, 558 |
| SfaNI | GCATC | 2 cut(s) | 45, 1316 |
| SfcI | CTRYAG | 3 cut(s) | 781, 1059, 1258 |
| SgrAI | CRCCGGYG | 1 cut(s) | 720 |
| SinI | GGWCC | 1 cut(s) | 1332 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1273 |
| SmlI | CTYRAG | 1 cut(s) | 551 |
| SmoI | CTYRAG | 1 cut(s) | 551 |
| Sse9I | AATT | 2 cut(s) | 117, 402 |
| SseBI | AGGCCT | 1 cut(s) | 351 |
| SsiI | CCGC | 4 cut(s) | 341, 762, 1064, 1103 |
| SspMI | CTAG | 4 cut(s) | 335, 468, 686, 884 |
| SstI | GAGCTC | 1 cut(s) | 558 |
| StuI | AGGCCT | 1 cut(s) | 351 |
| StyD4I | CCNGG | 7 cut(s) | 93, 174, 308, 451, 494, 894, 1209 |
| TaaI | ACNGT | 5 cut(s) | 55, 282, 378, 682, 824 |
| TaqI | TCGA | 5 cut(s) | 259, 301, 400, 484, 1372 |
| TasI | AATT | 2 cut(s) | 117, 402 |
| TfiI | GAWTC | 3 cut(s) | 271, 809, 1184 |
| Tru1I | TTAA | 1 cut(s) | 1223 |
| Tru9I | TTAA | 1 cut(s) | 1223 |
| TscAI | CASTG | 4 cut(s) | 285, 381, 687, 1003 |
| TseFI | GTSAC | 1 cut(s) | 844 |
| TseI | GCWGC | 7 cut(s) | 140, 338, 746, 887, 1061, 1169, 1340 |
| Tsp45I | GTSAC | 1 cut(s) | 844 |
| TspDTI | ATGAA | 4 cut(s) | 597, 630, 849, 1261 |
| TspGWI | ACGGA | 1 cut(s) | 1345 |
| TspRI | CASTG | 4 cut(s) | 285, 381, 687, 1003 |
| VpaK11BI | GGWCC | 1 cut(s) | 1332 |
| XapI | RAATTY | 1 cut(s) | 402 |
| XceI | RCATGY | 1 cut(s) | 493 |
| XmiI | GTMKAC | 2 cut(s) | 259, 624 |
| XspI | CTAG | 4 cut(s) | 335, 468, 686, 884 |