Rh1AG166000

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
31640524 .. 31644253
3730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG166000.1

Sequence Viewer

Length: 1392 bp
ATGGTATTCCTTTTGTGTTTGTTGGCAGGATGTAGCATCTGCTGGTTCAATACAGTCTGCTATGTATTATGTATTCGGCACTTCCAAGCCAACCGGGCACTTGCATTGTCCCTAACAATTAGTTTCAATGGCGTAAGCGCAGCCCTCTACAGCCTCATTGCCAATGCAATAAACCCAGCTGATGACAACCTCTACCTCTTATTGAATGCAGTAGTTCCACTCTTCACATCTGGTGTTGCACTAATCCCTCTGCTTCGTCAACCACCTTCAATTCAGCCACTGTCTCGTGAGGCTACTTATCGAGACTCCAGGATTTTTCTTTGCCTGTACATCCTAGCAGTGGTAACAGGCCTATATCTCCTCCTCCTCAACTCACTGTCCTCTAAGATATCAAATGCTCGAATTCTCTTGGTTGGTGCTATTTTTCTCCTGATCTTACCTTTATGTCTGCCTGGCATTGCATATGCTAGGGAGTGGGCTCGTCGAAACATGCCCTGGAGCTTCCAGAATGATAACTCGTCAAACTTCAATCTGGCCAACCCTGATGAACTTGAGCTCCATAAGGAACTCATTGCTGAAAATGAAAGTGGAAATGTGGTGAATGCCACTTCTTATGGGATGGTAGACAAGCAAGGTTGTTTATGGTGTTTTGGGAAGGTAATGGAGAAAGACAGGTTGACAGTGCTAGGGGAGGAACACTCTGCTCGGTTGCTCATACGCCGGTGGGATTTTTGGCTATACTATGCTGCATATTTTTGTGGCGGAACTATTGGATTGGTCTATAGCAACAATCTTGGGCAGATTTGTGAATCACTTGGATACGGTACCATGACCAGTTCTCTTGTCACACTATACTCTTCATGCTCCTTCTTTGGTCGTTTACTAGCAGCTTCCCCGGATTTCCTGCGCGATAAGTTATACTTTGCAAGGACTGGGTGGCTTGCAGCTGCGCTGGTACCAACACCAATCGCCTTCCTCCTGCTTACTCTATCAGGCAGTGAAGCAATGTTGCGTGCCGGAACAGGCTTGATCGGGATAAGCTCTGGGTTTGTGTTTTCTGCAGCGGTGTCAGTAACATCAGAGCTTTTTGGGCCAAACAGCGCGGGTGTAAACCACAACATCCTCATCACCAACATCCCTATTGGCTCACTCCTCTATGGCCTTCTTGCAGCTTTGGTGTATGATTCCAACGAAGGAAGCTCACTAATCCGGGAGAACTTTTTAAAAGAAGCAACATTGTGCATGGGTAGGTCATGCTACAGGCAGACATTCATATGGTGGGGCTGTATTTCAGTTGTAGGGTTAGCATCAAGCGTCTTGTTATTCCTACGGACCAGAGCTGCTTACAATCGTTTTGAGAGGAACAGATGTCGAACAGAGTCCTCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

50.98

Weight (kDa)

8.43

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 1 - 151 3.6e-37 Nodulin-like
NFD4_C PF23262 231 - 448 2.4e-51 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 824, 955
AccB1I GGYRCC 2 cut(s) 824, 955
AccI GTMKAC 1 cut(s) 624
AccII CGCG 2 cut(s) 909, 1103
AciI CCGC 3 cut(s) 762, 1064, 1103
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 3 cut(s) 329, 826, 957
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 5 cut(s) 49, 127, 205, 270, 529
AjnI CCWGG 3 cut(s) 308, 451, 494
AloI GAACNNNNNNTCC 2 cut(s) 540, 572
Alw21I GWGCWC 1 cut(s) 558
Alw26I GTCTC 2 cut(s) 288, 297
AlwNI CAGNNNCTG 1 cut(s) 280
AoxI GGCC 4 cut(s) 349, 534, 1091, 1159
ApeKI GCWGC 8 cut(s) 140, 746, 887, 944, 947, 1061, 1169, 1340
ApoI RAATTY 1 cut(s) 402
Asp718I GGTACC 2 cut(s) 824, 955
AspLEI GCGC 4 cut(s) 140, 909, 952, 1103
AspS9I GGNCC 2 cut(s) 1091, 1332
AsuC2I CCSGG 3 cut(s) 95, 896, 1211
AsuHPI GGTGA 2 cut(s) 610, 1120
AvaII GGWCC 1 cut(s) 1332
BaeGI GKGCMC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 536
BanI GGYRCC 2 cut(s) 824, 955
BanII GRGCYC 2 cut(s) 481, 558
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 558
BbvI GCAGC 8 cut(s) 152, 733, 899, 934, 956, 1073, 1181, 1327
BccI CCATC 1 cut(s) 613
BciT130I CCWGG 3 cut(s) 310, 453, 496
BciVI GTATCC 1 cut(s) 812
BcnI CCSGG 3 cut(s) 95, 896, 1211
BcoDI GTCTC 2 cut(s) 288, 297
BfaI CTAG 4 cut(s) 335, 468, 686, 884
BfmI CTRYAG 4 cut(s) 148, 781, 1059, 1258
BfuI GTATCC 1 cut(s) 812
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 8 cut(s) 141, 747, 888, 945, 948, 1062, 1170, 1341
BlsI GCNGC 8 cut(s) 142, 748, 889, 946, 949, 1063, 1171, 1342
Bme1390I CCNGG 6 cut(s) 95, 310, 453, 496, 896, 1211
Bme18I GGWCC 1 cut(s) 1332
BmgT120I GGNCC 2 cut(s) 1091, 1332
BmiI GGNNCC 2 cut(s) 826, 957
BmrFI CCNGG 6 cut(s) 95, 310, 453, 496, 896, 1211
BmrI ACTGGG 1 cut(s) 942
BmsI GCATC 2 cut(s) 45, 1316
BmuI ACTGGG 1 cut(s) 942
BplI GAGNNNNNCTC 3 cut(s) 683, 715, 1370
BpmI CTGGAG 2 cut(s) 292, 517
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 3 cut(s) 95, 896, 1211
BsaJI CCNNGG 2 cut(s) 494, 894
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 1 cut(s) 720
Bse1I ACTGG 2 cut(s) 834, 937
Bse3DI GCAATG 4 cut(s) 156, 456, 570, 1011
BseBI CCWGG 3 cut(s) 310, 453, 496
BseDI CCNNGG 2 cut(s) 494, 894
BseGI GGATG 5 cut(s) 35, 330, 624, 1119, 1134
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 4 cut(s) 156, 456, 570, 1011
BseNI ACTGG 2 cut(s) 834, 937
BseRI GAGGAG 5 cut(s) 350, 353, 356, 1142, 1375
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 8 cut(s) 152, 733, 899, 934, 956, 1073, 1181, 1327
BseYI CCCAGC 1 cut(s) 175
Bsh1236I CGCG 2 cut(s) 909, 1103
BshFI GGCC 4 cut(s) 351, 536, 1093, 1161
BshNI GGYRCC 2 cut(s) 824, 955
BsiHKAI GWGCWC 1 cut(s) 558
BsiSI CCGG 5 cut(s) 94, 721, 896, 1017, 1210
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 288, 297
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 2 cut(s) 211, 607
BsnI GGCC 4 cut(s) 351, 536, 1093, 1161
Bsp1286I GDGCHC 3 cut(s) 100, 481, 558
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 2 cut(s) 432, 1029
BspACI CCGC 3 cut(s) 762, 1064, 1103
BspANI GGCC 4 cut(s) 351, 536, 1093, 1161
BspFNI CGCG 2 cut(s) 909, 1103
BspLI GGNNCC 2 cut(s) 826, 957
BspMAI CTGCAG 1 cut(s) 1063
BspT107I GGYRCC 2 cut(s) 824, 955
BsrDI GCAATG 4 cut(s) 156, 456, 570, 1011
BsrFI RCCGGY 1 cut(s) 720
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 2 cut(s) 834, 937
BssAI RCCGGY 1 cut(s) 720
BssECI CCNNGG 2 cut(s) 494, 894
BssMI GATC 2 cut(s) 432, 1029
BssSI CACGAG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 3 cut(s) 310, 453, 496
Bst4CI ACNGT 5 cut(s) 55, 282, 378, 682, 824
Bst6I CTCTTC 2 cut(s) 227, 862
BstAUI TGTACA 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 942, 1014
BstDEI CTNAG 2 cut(s) 384, 1389
BstF5I GGATG 5 cut(s) 35, 330, 624, 1119, 1134
BstFNI CGCG 2 cut(s) 909, 1103
BstHHI GCGC 4 cut(s) 140, 909, 952, 1103
BstKTI GATC 2 cut(s) 435, 1032
BstMAI GTCTC 2 cut(s) 288, 297
BstMBI GATC 2 cut(s) 432, 1029
BstMWI GCNNNNNNNGC 2 cut(s) 95, 1090
BstNI CCWGG 3 cut(s) 310, 453, 496
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 6 cut(s) 93, 308, 451, 494, 894, 1209
BstSFI CTRYAG 4 cut(s) 148, 781, 1059, 1258
BstSLI GKGCMC 1 cut(s) 100
BstUI CGCG 2 cut(s) 909, 1103
BstV1I GCAGC 8 cut(s) 152, 733, 899, 934, 956, 1073, 1181, 1327
BsuI GTATCC 1 cut(s) 812
BsuRI GGCC 4 cut(s) 351, 536, 1093, 1161
BtsCI GGATG 5 cut(s) 35, 330, 624, 1119, 1134
BtsI GCAGTG 2 cut(s) 345, 1003
BtsIMutI CAGTG 5 cut(s) 278, 345, 374, 687, 1003
Cac8I GCNNGC 2 cut(s) 942, 1014
CaiI CAGNNNCTG 1 cut(s) 280
CfoI GCGC 4 cut(s) 140, 909, 952, 1103
Cfr10I RCCGGY 1 cut(s) 720
Cfr13I GGNCC 2 cut(s) 1091, 1332
CseI GACGC 1 cut(s) 1303
Csp6I GTAC 3 cut(s) 328, 825, 956
CviAII CATG 5 cut(s) 490, 829, 861, 1243, 1254
CviQI GTAC 3 cut(s) 328, 825, 956
DdeI CTNAG 2 cut(s) 384, 1389
DpnI GATC 2 cut(s) 434, 1031
DpnII GATC 2 cut(s) 432, 1029
DraI TTTAAA 1 cut(s) 1224
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 2 cut(s) 227, 862
EarI CTCTTC 2 cut(s) 227, 862
EciI GGCGGA 1 cut(s) 777
Ecl136II GAGCTC 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 351
Eco24I GRGCYC 2 cut(s) 481, 558
Eco32I GATATC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 1332
Eco53kI GAGCTC 1 cut(s) 556
EcoICRI GAGCTC 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 402
EcoRII CCWGG 3 cut(s) 308, 451, 494
EcoRV GATATC 1 cut(s) 390
EcoT38I GRGCYC 2 cut(s) 481, 558
FaeI CATG 5 cut(s) 493, 832, 864, 1246, 1257
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 1 cut(s) 94
FatI CATG 5 cut(s) 489, 828, 860, 1242, 1253
FauI CCCGC 1 cut(s) 1096
FauNDI CATATG 2 cut(s) 463, 1274
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 8 cut(s) 141, 747, 888, 945, 948, 1062, 1170, 1341
FokI GGATG 5 cut(s) 42, 317, 631, 1106, 1121
FriOI GRGCYC 2 cut(s) 481, 558
Fsp4HI GCNGC 8 cut(s) 141, 747, 888, 945, 948, 1062, 1170, 1341
FspBI CTAG 4 cut(s) 335, 468, 686, 884
GlaI GCGC 4 cut(s) 139, 908, 951, 1102
GluI GCNGC 8 cut(s) 141, 747, 888, 945, 948, 1062, 1170, 1341
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 2 cut(s) 292, 517
HaeIII GGCC 4 cut(s) 351, 536, 1093, 1161
HapII CCGG 5 cut(s) 94, 721, 896, 1017, 1210
HgaI GACGC 1 cut(s) 1303
HhaI GCGC 4 cut(s) 140, 909, 952, 1103
Hin1II CATG 5 cut(s) 493, 832, 864, 1246, 1257
Hin6I GCGC 4 cut(s) 138, 907, 950, 1101
HinP1I GCGC 4 cut(s) 138, 907, 950, 1101
HincII GTYRAC 2 cut(s) 260, 678
HindII GTYRAC 2 cut(s) 260, 678
HinfI GANTC 4 cut(s) 305, 809, 1184, 1379
HpaII CCGG 5 cut(s) 94, 721, 896, 1017, 1210
HphI GGTGA 2 cut(s) 610, 1120
Hpy166II GTNNAC 5 cut(s) 260, 625, 678, 881, 1111
Hpy188I TCNGA 1 cut(s) 1081
Hpy188III TCNNGA 5 cut(s) 287, 302, 430, 505, 1033
Hpy8I GTNNAC 5 cut(s) 260, 625, 678, 881, 1111
Hpy99I CGWCG 1 cut(s) 486
HpyAV CCTTC 6 cut(s) 276, 649, 877, 982, 1172, 1187
HpyCH4III ACNGT 5 cut(s) 55, 282, 378, 682, 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 1090
HpyF3I CTNAG 2 cut(s) 384, 1389
Hsp92II CATG 5 cut(s) 493, 832, 864, 1246, 1257
HspAI GCGC 4 cut(s) 138, 907, 950, 1101
KpnI GGTACC 2 cut(s) 828, 959
Kzo9I GATC 2 cut(s) 432, 1029
LmnI GCTCC 3 cut(s) 498, 561, 869
Lsp1109I GCAGC 8 cut(s) 152, 733, 899, 934, 956, 1073, 1181, 1327
LweI GCATC 2 cut(s) 45, 1316
MaeI CTAG 4 cut(s) 335, 468, 686, 884
MaeIII GTNAC 3 cut(s) 343, 844, 1072
MalI GATC 2 cut(s) 434, 1031
MboI GATC 2 cut(s) 432, 1029
MboII GAAGA 2 cut(s) 214, 849
MhlI GDGCHC 3 cut(s) 100, 481, 558
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 3 cut(s) 117, 270, 402
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 2 cut(s) 299, 1388
MmeI TCCRAC 1 cut(s) 1212
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
MseI TTAA 1 cut(s) 1223
MslI CAYNNNNRTG 1 cut(s) 1273
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 3 cut(s) 179, 947, 1064
MspI CCGG 5 cut(s) 94, 721, 896, 1017, 1210
MspR9I CCNGG 6 cut(s) 95, 310, 453, 496, 896, 1211
Mva1269I GAATGC 2 cut(s) 211, 607
MvaI CCWGG 3 cut(s) 310, 453, 496
MvnI CGCG 2 cut(s) 909, 1103
MwoI GCNNNNNNNGC 2 cut(s) 95, 1090
NciI CCSGG 3 cut(s) 95, 896, 1211
NdeI CATATG 2 cut(s) 463, 1274
NdeII GATC 2 cut(s) 432, 1029
NlaIII CATG 5 cut(s) 493, 832, 864, 1246, 1257
NlaIV GGNNCC 2 cut(s) 826, 957
NmuCI GTSAC 1 cut(s) 844
NspI RCATGY 1 cut(s) 493
PceI AGGCCT 1 cut(s) 351
PctI GAATGC 2 cut(s) 211, 607
PfeI GAWTC 2 cut(s) 809, 1184
PfoI TCCNGGA 2 cut(s) 308, 1209
PkrI GCNGC 8 cut(s) 142, 748, 889, 946, 949, 1063, 1171, 1342
PleI GAGTC 2 cut(s) 299, 1387
PpsI GAGTC 2 cut(s) 299, 1387
Psp124BI GAGCTC 1 cut(s) 558
Psp6I CCWGG 3 cut(s) 308, 451, 494
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 3 cut(s) 308, 451, 494
PspN4I GGNNCC 2 cut(s) 826, 957
PspPI GGNCC 2 cut(s) 1091, 1332
PstI CTGCAG 1 cut(s) 1063
PstNI CAGNNNCTG 1 cut(s) 280
PvuII CAGCTG 2 cut(s) 179, 947
RsaI GTAC 3 cut(s) 329, 826, 957
RsaNI GTAC 3 cut(s) 328, 825, 956
RseI CAYNNNNRTG 1 cut(s) 1273
SacI GAGCTC 1 cut(s) 558
SaqAI TTAA 1 cut(s) 1223
SatI GCNGC 8 cut(s) 141, 747, 888, 945, 948, 1062, 1170, 1341
Sau3AI GATC 2 cut(s) 432, 1029
Sau96I GGNCC 2 cut(s) 1091, 1332
SchI GAGTC 2 cut(s) 299, 1388
ScrFI CCNGG 6 cut(s) 95, 310, 453, 496, 896, 1211
SduI GDGCHC 3 cut(s) 100, 481, 558
SfaNI GCATC 2 cut(s) 45, 1316
SfcI CTRYAG 4 cut(s) 148, 781, 1059, 1258
SgrAI CRCCGGYG 1 cut(s) 720
SinI GGWCC 1 cut(s) 1332
SmiMI CAYNNNNRTG 1 cut(s) 1273
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 3 cut(s) 117, 270, 402
SseBI AGGCCT 1 cut(s) 351
SsiI CCGC 3 cut(s) 762, 1064, 1103
SspMI CTAG 4 cut(s) 335, 468, 686, 884
SstI GAGCTC 1 cut(s) 558
StuI AGGCCT 1 cut(s) 351
StyD4I CCNGG 6 cut(s) 93, 308, 451, 494, 894, 1209
TaaI ACNGT 5 cut(s) 55, 282, 378, 682, 824
TaqI TCGA 4 cut(s) 301, 400, 484, 1372
TasI AATT 3 cut(s) 117, 270, 402
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 2 cut(s) 809, 1184
Tru1I TTAA 1 cut(s) 1223
Tru9I TTAA 1 cut(s) 1223
TscAI CASTG 5 cut(s) 285, 345, 381, 687, 1003
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 8 cut(s) 140, 746, 887, 944, 947, 1061, 1169, 1340
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 4 cut(s) 561, 597, 849, 1261
TspGWI ACGGA 1 cut(s) 1345
TspRI CASTG 5 cut(s) 285, 345, 381, 687, 1003
VpaK11BI GGWCC 1 cut(s) 1332
XapI RAATTY 1 cut(s) 402
XceI RCATGY 1 cut(s) 493
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 4 cut(s) 335, 468, 686, 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.