pycom07g06400

Nodulin-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
5658991 .. 5662341
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g06400.1

Sequence Viewer

Length: 1752 bp
ATGGTTGGGCAATCGAGAAAATGGATGATACTCGTGGCGGCGACATGGATACAGGCGTTCACAGGGACGAACTTTGATTTCGCATCCTATTCTTCTGACCTGAAATCTGTGCTGGGGATTTCTCAGGTGCAGCTCAACTATCTATCGGTGGCCTCGGATATGGGGAAGGCATTGGGTTGGTGTTCTGGGGTTTCTCTCATGTATTTTCCCTTGTGGGTTGTTATGTTCATGGCTGCCTTCATGGGTTTGTTCGGTTATGGCCTCCAATGGCTTGTCATTCAAAGACTCATCTCTCTGCCTTATGTTATGGTATTCCTTCTATGCTTGTTGGCTGGATGCAGCATCTGCTGGTTCAACACAGTCTGCTATGTTCTATGCATCAGACACTTCCAGGCCAACCGGGCACTTGCGTTGTCTCTCACAGTCAGTTTCAATGGGGTAAGTGCCGCCCTCTACACCCTCACTGCCAATGCAATAAACCCGAGCGACGATACCATCTACCTCTTCCTTAATGCTCTAGTTCCTCTCTTCACATCCGGCTTAGCACTCATCCCTGTGCTCCGTCAGCCCAAAGTTGAATCACTTCCTGCTGAGGCCACTCGTCATGACTCCATGATTTTTCTTTGCCTAAACATCCTAGCTGTGGTCACAGGTCTATATCTCCTACTCCTTAACTCACTATCCTCTGATGTGTCAAGAGCTCGGATACTCTTAGTTGGTGCGATTTGTCTCCTAATCCTACCTCTGTGTCTGCCTGGCACGGCATACGCGCGTGAGTGGGCTCGTAGGAACTTCCCCTCAAGCCTCCGTTCTGAAAACTCGTCAACCTTCAATCTGGTTGACACTGATGATTTTGAGCTTCATAAGGAACTCATTGATGTAAGTGAAAATGCTAATGCCACGAAGGCCACAAATGCCACAAATTCCACGAACTCCAATTCGTATGGGCTGGTAGACAAGGAACGCTTTTTTGGGTGTTTCGCGTGTTTTGGGAAGATGATGGAAAAAGATAGGTTGACAGTGCTAGGTGAAGAGCACTCAGCTAGGCTGCTTGTACGTCGGTGGGATTTTTGGCTATACTATGCTGCATACTTTTGTGGGGGAACTATTGGGTTGGTCTACAGCAACAATCTTGGCCAGATTTCACAATCACTTGGATACAGTTCCCTGACTAGTTCTCTTGTCACACTATATTCTTCATGCTCCTTCTTTGGCCGTTTGCTCTCAGCTGCACCAGATTTCCTGCGTGACAAGGTTTATTTTGCTAGGACTGGATGGCTACTAGTTGCCCTGATGCCAACACCAATTGCCTTCATTCTGCTTGCCACATCAGGCAGTGAGGCAATGCTGCGTGCTGGAACAGGCTTGATCGGGATAAGCTCCGGCTTTGTGTTCTCTGCAGCTGTATCTGTTACATCAGAGCTTTTCGGCCCAAACAGTGCTGGCGTAAACCACAACATCCTCATCACCAATATCCCAATTGGCTCACTCCTATACGGCCTTCTTGCAGCTTTGGTGTATGATTCCAATGATGGAAGCTCAACAACCCCGGTGAGCTTGTTAAAGGAAGCAACATTGTGCATGGGAAGCTCATGCTATAGGCAGACATTCATATGGTGGGGCTGTATTTCAATAGTAGGGTTAGCTTCAAGCTTATTACTATTCCTACGAACAAGGACTGCTTATAATCGGTTTGAGAGGAACAGGACTAAGACGCAAGTCACACAATCCTCCTTACAAACCTCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

584

Amino Acids

63.91

Weight (kDa)

8.52

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 7 - 252 1.8e-83 Nodulin-like
NFD4_C PF23262 344 - 562 7.6e-51 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1686
AccI GTMKAC 2 cut(s) 954, 1119
AccII CGCG 3 cut(s) 770, 772, 983
AciI CCGC 2 cut(s) 38, 447
AcoI YGGCCR 2 cut(s) 1135, 1213
AcsI RAATTY 1 cut(s) 922
AfaI GTAC 1 cut(s) 1056
AfiI CCNNNNNNNGG 1 cut(s) 643
AgsI TTSAA 7 cut(s) 281, 355, 433, 578, 832, 1632, 1650
AhlI ACTAGT 2 cut(s) 1172, 1282
AjnI CCWGG 2 cut(s) 390, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 954, 986
Alw21I GWGCWC 3 cut(s) 561, 703, 1038
Alw26I GTCTC 2 cut(s) 420, 734
AlwNI CAGNNNCTG 1 cut(s) 345
Ama87I CYCGRG 1 cut(s) 481
AoxI GGCC 9 cut(s) 150, 259, 393, 594, 906, 1135, 1213, 1429, 1498
ApeKI GCWGC 9 cut(s) 130, 233, 339, 1048, 1085, 1229, 1348, 1400, 1508
ApoI RAATTY 1 cut(s) 922
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 1 cut(s) 1430
AsuC2I CCSGG 2 cut(s) 401, 1550
AsuHPI GGTGA 3 cut(s) 1040, 1459, 1564
AvaI CYCGRG 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 406
BaeI ACNNNNGTAYC 2 cut(s) 41, 74
BalI TGGCCA 1 cut(s) 1137
BanII GRGCYC 2 cut(s) 703, 784
BauI CACGAG 1 cut(s) 32
Bbv12I GWGCWC 3 cut(s) 561, 703, 1038
BbvCI CCTCAGC 1 cut(s) 591
BbvI GCAGC 9 cut(s) 142, 220, 351, 1035, 1072, 1216, 1335, 1412, 1520
BccI CCATC 4 cut(s) 503, 994, 1269, 1526
BceAI ACGGC 3 cut(s) 777, 1200, 1513
BciT130I CCWGG 2 cut(s) 392, 756
BciVI GTATCC 3 cut(s) 42, 699, 1151
BcnI CCSGG 2 cut(s) 401, 1550
BcoDI GTCTC 2 cut(s) 420, 734
BcuI ACTAGT 2 cut(s) 1172, 1282
BfaI CTAG 7 cut(s) 518, 638, 1025, 1044, 1173, 1266, 1283
BfmI CTRYAG 3 cut(s) 1120, 1398, 1597
BfuI GTATCC 3 cut(s) 42, 699, 1151
BglI GCCNNNNNGGC 2 cut(s) 401, 905
BlpI GCTNAGC 1 cut(s) 541
Bme1390I CCNGG 4 cut(s) 392, 401, 756, 1550
BmeT110I CYCGRG 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 1430
BmrFI CCNGG 4 cut(s) 392, 401, 756, 1550
BmsI GCATC 5 cut(s) 92, 326, 351, 387, 1284
BoxI GACNNNNGTC 1 cut(s) 1718
Bpu10I CCTNAGC 1 cut(s) 591
Bpu1102I GCTNAGC 1 cut(s) 541
BpuEI CTTGAG 1 cut(s) 784
BpuMI CCSGG 2 cut(s) 401, 1550
BsaJI CCNNGG 2 cut(s) 153, 1548
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse1I ACTGG 1 cut(s) 1276
Bse3DI GCAATG 1 cut(s) 1350
BseBI CCWGG 2 cut(s) 392, 756
BseDI CCNNGG 2 cut(s) 153, 1548
BseGI GGATG 8 cut(s) 30, 83, 341, 533, 549, 633, 1280, 1458
BseLI CCNNNNNNNGG 1 cut(s) 643
BseMI GCAATG 1 cut(s) 1350
BseMII CTCAG 4 cut(s) 137, 582, 1053, 1239
BseNI ACTGG 1 cut(s) 1276
BseRI GAGGAG 1 cut(s) 1735
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 9 cut(s) 142, 220, 351, 1035, 1072, 1216, 1335, 1412, 1520
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 2 cut(s) 149, 1215
Bsh1236I CGCG 3 cut(s) 770, 772, 983
BshFI GGCC 9 cut(s) 152, 261, 395, 596, 908, 1137, 1215, 1431, 1500
BsiHKAI GWGCWC 3 cut(s) 561, 703, 1038
BsiHKCI CYCGRG 1 cut(s) 481
BsiSI CCGG 4 cut(s) 400, 537, 1383, 1550
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 643
BsmAI GTCTC 2 cut(s) 420, 734
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 9 cut(s) 152, 261, 395, 596, 908, 1137, 1215, 1431, 1500
BsoBI CYCGRG 1 cut(s) 481
Bsp1286I GDGCHC 5 cut(s) 406, 561, 703, 784, 1038
Bsp143I GATC 1 cut(s) 1368
Bsp1720I GCTNAGC 1 cut(s) 541
BspACI CCGC 2 cut(s) 38, 447
BspANI GGCC 9 cut(s) 152, 261, 395, 596, 908, 1137, 1215, 1431, 1500
BspCNI CTCAG 4 cut(s) 136, 583, 1052, 1238
BspFNI CGCG 3 cut(s) 770, 772, 983
BspHI TCATGA 1 cut(s) 604
BspMAI CTGCAG 1 cut(s) 1402
BspQI GCTCTTC 1 cut(s) 1026
BsrDI GCAATG 1 cut(s) 1350
BsrI ACTGG 1 cut(s) 1276
BssECI CCNNGG 2 cut(s) 153, 1548
BssMI GATC 1 cut(s) 1368
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 392, 756
Bst4CI ACNGT 5 cut(s) 361, 424, 1021, 1163, 1439
Bst6I CTCTTC 3 cut(s) 509, 533, 1026
BstAPI GCANNNNNTGC 1 cut(s) 345
BstC8I GCNNGC 3 cut(s) 1323, 1353, 1444
BstDEI CTNAG 8 cut(s) 123, 541, 591, 712, 1039, 1225, 1710, 1749
BstF5I GGATG 8 cut(s) 30, 83, 341, 533, 549, 633, 1280, 1458
BstFNI CGCG 3 cut(s) 770, 772, 983
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 1 cut(s) 1371
BstMAI GTCTC 2 cut(s) 420, 734
BstMBI GATC 1 cut(s) 1368
BstMWI GCNNNNNNNGC 6 cut(s) 345, 401, 565, 905, 914, 1587
BstNI CCWGG 2 cut(s) 392, 756
BstPAI GACNNNNGTC 1 cut(s) 1718
BstSCI CCNGG 4 cut(s) 390, 399, 754, 1548
BstSFI CTRYAG 3 cut(s) 1120, 1398, 1597
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 3 cut(s) 770, 772, 983
BstV1I GCAGC 9 cut(s) 142, 220, 351, 1035, 1072, 1216, 1335, 1412, 1520
BsuI GTATCC 3 cut(s) 42, 699, 1151
BsuRI GGCC 9 cut(s) 152, 261, 395, 596, 908, 1137, 1215, 1431, 1500
BtsCI GGATG 8 cut(s) 30, 83, 341, 533, 549, 633, 1280, 1458
BtsI GCAGTG 2 cut(s) 462, 1342
BtsIMutI CAGTG 5 cut(s) 462, 843, 1026, 1342, 1444
Cac8I GCNNGC 3 cut(s) 1323, 1353, 1444
CaiI CAGNNNCTG 1 cut(s) 345
CciI TCATGA 1 cut(s) 604
CfoI GCGC 1 cut(s) 772
Cfr13I GGNCC 1 cut(s) 1430
CseI GACGC 1 cut(s) 1723
Csp6I GTAC 1 cut(s) 1055
CviAII CATG 9 cut(s) 45, 199, 229, 241, 605, 613, 1200, 1582, 1593
CviQI GTAC 1 cut(s) 1055
DdeI CTNAG 8 cut(s) 123, 541, 591, 712, 1039, 1225, 1710, 1749
DpnI GATC 1 cut(s) 1370
DpnII GATC 1 cut(s) 1368
EaeI YGGCCR 2 cut(s) 1135, 1213
Eam1104I CTCTTC 3 cut(s) 509, 533, 1026
EarI CTCTTC 3 cut(s) 509, 533, 1026
Ecl136II GAGCTC 1 cut(s) 701
Eco24I GRGCYC 2 cut(s) 703, 784
Eco53kI GAGCTC 1 cut(s) 701
Eco88I CYCGRG 1 cut(s) 481
EcoICRI GAGCTC 1 cut(s) 701
EcoRII CCWGG 2 cut(s) 390, 754
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 2 cut(s) 703, 784
FaeI CATG 9 cut(s) 48, 202, 232, 244, 608, 616, 1203, 1585, 1596
FalI AAGNNNNNCTT 4 cut(s) 950, 982, 1666, 1698
FaqI GGGAC 1 cut(s) 79
FatI CATG 9 cut(s) 44, 198, 228, 240, 604, 612, 1199, 1581, 1592
FauNDI CATATG 1 cut(s) 1613
FblI GTMKAC 2 cut(s) 954, 1119
FokI GGATG 8 cut(s) 37, 70, 348, 520, 536, 620, 1287, 1445
FriOI GRGCYC 2 cut(s) 703, 784
FspBI CTAG 7 cut(s) 518, 638, 1025, 1044, 1173, 1266, 1283
GlaI GCGC 1 cut(s) 771
GsaI CCCAGC 1 cut(s) 116
HaeIII GGCC 9 cut(s) 152, 261, 395, 596, 908, 1137, 1215, 1431, 1500
HapII CCGG 4 cut(s) 400, 537, 1383, 1550
HgaI GACGC 1 cut(s) 1723
HhaI GCGC 1 cut(s) 772
Hin1II CATG 9 cut(s) 48, 202, 232, 244, 608, 616, 1203, 1585, 1596
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HincII GTYRAC 3 cut(s) 825, 841, 1017
HindII GTYRAC 3 cut(s) 825, 841, 1017
HindIII AAGCTT 1 cut(s) 1651
HinfI GANTC 4 cut(s) 285, 578, 608, 1523
HpaII CCGG 4 cut(s) 400, 537, 1383, 1550
HphI GGTGA 3 cut(s) 1040, 1459, 1564
Hpy166II GTNNAC 7 cut(s) 60, 825, 841, 955, 1017, 1120, 1450
Hpy188I TCNGA 7 cut(s) 97, 157, 383, 688, 705, 814, 1420
Hpy188III TCNNGA 4 cut(s) 15, 605, 696, 1372
Hpy8I GTNNAC 7 cut(s) 60, 825, 841, 955, 1017, 1120, 1450
Hpy99I CGWCG 2 cut(s) 491, 1062
HpyAV CCTTC 8 cut(s) 160, 247, 326, 838, 898, 1216, 1321, 1511
HpyCH4III ACNGT 5 cut(s) 361, 424, 1021, 1163, 1439
HpyCH4IV ACGT 1 cut(s) 1057
HpyCH4V TGCA 9 cut(s) 130, 339, 378, 473, 1088, 1232, 1400, 1508, 1581
HpyF10VI GCNNNNNNNGC 6 cut(s) 345, 401, 565, 905, 914, 1587
HpyF3I CTNAG 8 cut(s) 123, 541, 591, 712, 1039, 1225, 1710, 1749
HpySE526I ACGT 1 cut(s) 1057
Hsp92II CATG 9 cut(s) 48, 202, 232, 244, 608, 616, 1203, 1585, 1596
HspAI GCGC 1 cut(s) 770
Kzo9I GATC 1 cut(s) 1368
LguI GCTCTTC 1 cut(s) 1026
LmnI GCTCC 3 cut(s) 564, 1208, 1385
Lsp1109I GCAGC 9 cut(s) 142, 220, 351, 1035, 1072, 1216, 1335, 1412, 1520
LweI GCATC 5 cut(s) 92, 326, 351, 387, 1284
MaeI CTAG 7 cut(s) 518, 638, 1025, 1044, 1173, 1266, 1283
MaeII ACGT 1 cut(s) 1057
MaeIII GTNAC 5 cut(s) 646, 1183, 1247, 1411, 1720
MalI GATC 1 cut(s) 1370
MboI GATC 1 cut(s) 1368
MboII GAAGA 6 cut(s) 84, 496, 520, 1006, 1043, 1188
MfeI CAATTG 2 cut(s) 1305, 1479
MhlI GDGCHC 5 cut(s) 406, 561, 703, 784, 1038
MlsI TGGCCA 1 cut(s) 1137
MluCI AATT 4 cut(s) 922, 937, 1305, 1479
MluNI TGGCCA 1 cut(s) 1137
MlyI GAGTC 2 cut(s) 279, 602
Mox20I TGGCCA 1 cut(s) 1137
Mph1103I ATGCAT 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 1137
MseI TTAA 3 cut(s) 510, 672, 1562
MslI CAYNNNNRTG 2 cut(s) 554, 1612
Msp20I TGGCCA 1 cut(s) 1137
MspA1I CMGCKG 2 cut(s) 1229, 1403
MspI CCGG 4 cut(s) 400, 537, 1383, 1550
MspR9I CCNGG 4 cut(s) 392, 401, 756, 1550
MunI CAATTG 2 cut(s) 1305, 1479
MvaI CCWGG 2 cut(s) 392, 756
MvnI CGCG 3 cut(s) 770, 772, 983
MwoI GCNNNNNNNGC 6 cut(s) 345, 401, 565, 905, 914, 1587
NciI CCSGG 2 cut(s) 401, 1550
NdeI CATATG 1 cut(s) 1613
NdeII GATC 1 cut(s) 1368
NlaIII CATG 9 cut(s) 48, 202, 232, 244, 608, 616, 1203, 1585, 1596
NmuCI GTSAC 4 cut(s) 646, 1183, 1247, 1720
NsiI ATGCAT 1 cut(s) 380
PagI TCATGA 1 cut(s) 604
PciSI GCTCTTC 1 cut(s) 1026
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 578, 1523
PleI GAGTC 2 cut(s) 279, 602
PpsI GAGTC 2 cut(s) 279, 602
PshAI GACNNNNGTC 1 cut(s) 1718
PsiI TTATAA 1 cut(s) 1686
Psp124BI GAGCTC 1 cut(s) 703
Psp6I CCWGG 2 cut(s) 390, 754
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 2 cut(s) 390, 754
PspPI GGNCC 1 cut(s) 1430
PstI CTGCAG 1 cut(s) 1402
PstNI CAGNNNCTG 1 cut(s) 345
PvuII CAGCTG 2 cut(s) 1229, 1403
RsaI GTAC 1 cut(s) 1056
RsaNI GTAC 1 cut(s) 1055
RseI CAYNNNNRTG 2 cut(s) 554, 1612
SacI GAGCTC 1 cut(s) 703
SapI GCTCTTC 1 cut(s) 1026
SaqAI TTAA 3 cut(s) 510, 672, 1562
Sau3AI GATC 1 cut(s) 1368
Sau96I GGNCC 1 cut(s) 1430
SchI GAGTC 2 cut(s) 279, 602
ScrFI CCNGG 4 cut(s) 392, 401, 756, 1550
SduI GDGCHC 5 cut(s) 406, 561, 703, 784, 1038
SfaNI GCATC 5 cut(s) 92, 326, 351, 387, 1284
SfcI CTRYAG 3 cut(s) 1120, 1398, 1597
SmiMI CAYNNNNRTG 2 cut(s) 554, 1612
SmlI CTYRAG 1 cut(s) 799
SmoI CTYRAG 1 cut(s) 799
SpeI ACTAGT 2 cut(s) 1172, 1282
Sse9I AATT 4 cut(s) 922, 937, 1305, 1479
SsiI CCGC 2 cut(s) 38, 447
SspMI CTAG 7 cut(s) 518, 638, 1025, 1044, 1173, 1266, 1283
SstI GAGCTC 1 cut(s) 703
StyD4I CCNGG 4 cut(s) 390, 399, 754, 1548
TaaI ACNGT 5 cut(s) 361, 424, 1021, 1163, 1439
TaiI ACGT 1 cut(s) 1060
TaqI TCGA 1 cut(s) 14
TasI AATT 4 cut(s) 922, 937, 1305, 1479
TauI GCSGC 2 cut(s) 41, 449
TfiI GAWTC 2 cut(s) 578, 1523
Tru1I TTAA 3 cut(s) 510, 672, 1562
Tru9I TTAA 3 cut(s) 510, 672, 1562
TscAI CASTG 5 cut(s) 469, 850, 1026, 1342, 1444
TseFI GTSAC 4 cut(s) 646, 1183, 1247, 1720
TseI GCWGC 9 cut(s) 130, 233, 339, 1048, 1085, 1229, 1348, 1400, 1508
Tsp45I GTSAC 4 cut(s) 646, 1183, 1247, 1720
TspDTI ATGAA 6 cut(s) 217, 229, 851, 1188, 1303, 1600
TspGWI ACGGA 2 cut(s) 551, 797
TspRI CASTG 5 cut(s) 469, 850, 1026, 1342, 1444
XapI RAATTY 1 cut(s) 922
XmiI GTMKAC 2 cut(s) 954, 1119
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 7 cut(s) 518, 638, 1025, 1044, 1173, 1266, 1283
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.