Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012155.1

Orthogroup ID

OG0002097

Physical Location & Seq

Genomic Coordinates Forward (+)

27676 .. 29721

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012155.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

atgtttcttctgtgtttgttggctgggtgtagcatctgttggttcaacacagtatgcttcgttctttgcattcggaatttcccggctaatcaacccttagcaatatcactcacagtgagcttcaacggtgtaagtgcggccttatacaacctcgctgcagatgcaattgactcctcttctacttctttatatctcattttgaatgctgtcattccccttctcacttctgtagcagcattgattccgattctccgacaaccctctctcgacccccttccacctgatggagttcgtcgtgactccatcatttttctctttttgaatatcctagctgttctaactggcatttaccttcttctctttggttcgtcctcttttgacacagcaactgctcgcgtcttcttgggtggagccgttttcctactcattttccctttgtgtattcctggcattgtctatgctcgggactggtttcgtcatgccattcactctaacatccgcattgaaggttcaggcttcattcttgtcgatgtagatgatctagagcttcacaaagagctgctgagccgtgagcctagtatttatgggaatggatcgctttctcaccttctggtcagtaatggtgcatctgctgaaagtttgtcatttcgaaacaagagtgcagagtacacagggtgttgtggaacaattgtgggaaaggatcaattggcaatgcttggagaagagcactcggcaagattgcttgtgagaaggttggatttttggctatactacattgcatacttttgtgggggtaccattggtcttgtttacagtaacaatcttggacagatagctcaatcattagggcagagctccaataccacaacacttgtgactctctattcatccttctcattctttggccggttgctgtcagctgtacccgactacatacgagcgaagttctattttgcaaggacaggatggctaaccatagcacttttgccaaccccagttgctttcacattgcttgctgcatcaggcagtaccatggctttgcacgctggcactgcactgatcggattgagctctggtttcatttttgctgctgctgtttccattacatcagagttgttcgggcctaacagcgtaggtgtcaatcacaacattctgattacaaacataccactcggttcacttgtttatggttttctagctgcaattgtttacgatgccaatgtaagcactggcctcaacatcttaacagctgatacaatagtgtgcatggggaggaactgctattttctaacatttgtgtggtgggcgtgcatatctgttttggggctggcgtcaagtgtgctcttattcttaagaactagacatgcctatgaccatttcgagcataatcgctctacgcaactgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like PUCC

Protein Analysis

469

Amino Acids

50.85

Weight (kDa)

6.54

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19450 AT4G19450 AT5G45275
fragaria_vesca	FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730
malus_domestica	MD02G1233200.v1.1 MD06G1022100.v1.1 MD07G1080400.v1.1 MD16G1287800.v1.1
prunus_persica	Prupe.2G104800_v2.0.a1 Prupe.5G016300_v2.0.a1
pyrus_communis	pycom06g01600 pycom07g06400
rosa_chinensis	RchiOBHm_Chr1g0342361 RchiOBHm_Chr7g0214811
rosa_laevigata	RLG00000002719 RLG00000002720 RLG00000029156
rosa_multiflora	Rmu_co8462433.1_g000001 Rmu_sc0002308.1_g000032 Rmu_sc0012155.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245010 Rroxscaffold_4G00312980
rosa_rugosa	Rorug01G0151600.1 Rorug07G0147200 Rorug07G0147300 Rorug07G0147400
rosa_samantha	Rh1AG166000 Rh1BG132500 Rh1CG154600 Rh1DG167400 Rh7AG284200 Rh7BG275100 Rh7CG303600 Rh7DG287500
rosa_wichuraiana	Rw1G013870 Rw7G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	794
AccB1I	GGYRCC	1 cut(s)	794
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccII	CGCG	1 cut(s)	396
AciI	CCGC	2 cut(s)	137, 499
AclWI	GGATC	2 cut(s)	601, 708
AcoI	YGGCCR	1 cut(s)	904
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	1331
AdeI	CACNNNGTG	1 cut(s)	675
AfaI	GTAC	4 cut(s)	668, 796, 924, 1030
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflII	CTTAAG	1 cut(s)	1351
AgsI	TTSAA	5 cut(s)	46, 124, 202, 322, 506
AjnI	CCWGG	1 cut(s)	445
Alw21I	GWGCWC	4 cut(s)	729, 857, 1073, 1344
AlwI	GGATC	2 cut(s)	601, 708
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	462
AoxI	GGCC	4 cut(s)	138, 904, 1121, 1231
ApeKI	GCWGC	7 cut(s)	155, 233, 559, 1016, 1088, 1091, 1199
ApoI	RAATTY	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	794
AspS9I	GGNCC	1 cut(s)	1121
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	596
AsuII	TTCGAA	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	462
BaeI	ACNNNNGTAYC	2 cut(s)	1245, 1278
BanI	GGYRCC	1 cut(s)	794
BanII	GRGCYC	2 cut(s)	857, 1073
BbsI	GAAGAC	1 cut(s)	391
Bbv12I	GWGCWC	4 cut(s)	729, 857, 1073, 1344
BbvI	GCAGC	7 cut(s)	142, 245, 546, 1003, 1075, 1078, 1186
BccI	CCATC	3 cut(s)	278, 311, 960
BceAI	ACGGC	2 cut(s)	398, 552
BciT130I	CCWGG	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	83
BfaI	CTAG	5 cut(s)	329, 542, 576, 1196, 1359
BfmI	CTRYAG	2 cut(s)	156, 228
BfrI	CTTAAG	1 cut(s)	1351
BisI	GCNGC	8 cut(s)	138, 156, 234, 560, 1017, 1089, 1092, 1200
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	8 cut(s)	139, 157, 235, 561, 1018, 1090, 1093, 1201
Bme1390I	CCNGG	2 cut(s)	83, 447
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	1121
BmiI	GGNNCC	2 cut(s)	412, 796
BmrFI	CCNGG	2 cut(s)	83, 447
BmrI	ACTGGG	1 cut(s)	989
BmsI	GCATC	5 cut(s)	42, 151, 635, 1028, 1204
BmuI	ACTGGG	1 cut(s)	989
BpiI	GAAGAC	1 cut(s)	391
Bpu10I	CCTNAGC	1 cut(s)	97
Bpu1102I	GCTNAGC	1 cut(s)	563
Bpu14I	TTCGAA	1 cut(s)	649
BpuMI	CCSGG	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	1331
BsaJI	CCNNGG	1 cut(s)	1032
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	1 cut(s)	906
Bse1I	ACTGG	4 cut(s)	346, 473, 995, 1234
Bse3DI	GCAATG	3 cut(s)	717, 774, 1007
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	1032
BseGI	GGATG	3 cut(s)	495, 887, 971
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseMI	GCAATG	3 cut(s)	717, 774, 1007
BseMII	CTCAG	1 cut(s)	554
BseNI	ACTGG	4 cut(s)	346, 473, 995, 1234
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	7 cut(s)	142, 245, 546, 1003, 1075, 1078, 1186
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	2 cut(s)	681, 1038
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	4 cut(s)	140, 906, 1123, 1233
BshNI	GGYRCC	1 cut(s)	794
BsiHKAI	GWGCWC	4 cut(s)	729, 857, 1073, 1344
BsiHKCI	CYCGRG	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	83, 907
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	479
BsmI	GAATGC	2 cut(s)	69, 208
BsnI	GGCC	4 cut(s)	140, 906, 1123, 1233
BsoBI	CYCGRG	1 cut(s)	462
Bsp119I	TTCGAA	1 cut(s)	649
Bsp1286I	GDGCHC	4 cut(s)	729, 857, 1073, 1344
Bsp143I	GATC	4 cut(s)	538, 593, 700, 1059
Bsp1720I	GCTNAGC	1 cut(s)	563
Bsp19I	CCATGG	1 cut(s)	1032
BspACI	CCGC	2 cut(s)	137, 499
BspANI	GGCC	4 cut(s)	140, 906, 1123, 1233
BspCNI	CTCAG	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	412, 796
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	2 cut(s)	601, 708
BspQI	GCTCTTC	1 cut(s)	717
BspT104I	TTCGAA	1 cut(s)	649
BspT107I	GGYRCC	1 cut(s)	794
BspTI	CTTAAG	1 cut(s)	1351
BsrDI	GCAATG	3 cut(s)	717, 774, 1007
BsrFI	RCCGGY	1 cut(s)	906
BsrI	ACTGG	4 cut(s)	346, 473, 995, 1234
BssAI	RCCGGY	1 cut(s)	906
BssECI	CCNNGG	1 cut(s)	1032
BssMI	GATC	4 cut(s)	538, 593, 700, 1059
BssNI	GRCGYC	1 cut(s)	1331
BssT1I	CCWWGG	1 cut(s)	1032
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	5 cut(s)	52, 115, 128, 815, 1404
Bst6I	CTCTTC	2 cut(s)	181, 717
BstACI	GRCGYC	1 cut(s)	1331
BstAFI	CTTAAG	1 cut(s)	1351
BstBI	TTCGAA	1 cut(s)	649
BstC8I	GCNNGC	6 cut(s)	394, 1014, 1044, 1048, 1309, 1329
BstDEI	CTNAG	2 cut(s)	97, 563
BstDSI	CCRYGG	1 cut(s)	1032
BstF5I	GGATG	3 cut(s)	495, 887, 971
BstFNI	CGCG	1 cut(s)	396
BstKTI	GATC	4 cut(s)	541, 596, 703, 1062
BstMBI	GATC	4 cut(s)	538, 593, 700, 1059
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 1043, 1052
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	1367
BstSCI	CCNGG	2 cut(s)	81, 445
BstSFI	CTRYAG	2 cut(s)	156, 228
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	7 cut(s)	142, 245, 546, 1003, 1075, 1078, 1186
BstV2I	GAAGAC	1 cut(s)	391
BsuRI	GGCC	4 cut(s)	140, 906, 1123, 1233
BtgI	CCRYGG	1 cut(s)	1032
BtsCI	GGATG	3 cut(s)	495, 887, 971
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	4 cut(s)	120, 1050, 1055, 1227
Cac8I	GCNNGC	6 cut(s)	394, 1014, 1044, 1048, 1309, 1329
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr10I	RCCGGY	1 cut(s)	906
Cfr13I	GGNCC	1 cut(s)	1121
CseI	GACGC	2 cut(s)	385, 1320
Csp6I	GTAC	4 cut(s)	667, 795, 923, 1029
CspCI	CAANNNNNGTGG	2 cut(s)	853, 888
CviAII	CATG	4 cut(s)	479, 1033, 1267, 1364
CviQI	GTAC	4 cut(s)	667, 795, 923, 1029
DdeI	CTNAG	2 cut(s)	97, 563
DpnI	GATC	4 cut(s)	540, 595, 702, 1061
DpnII	GATC	4 cut(s)	538, 593, 700, 1059
DraIII	CACNNNGTG	1 cut(s)	675
EaeI	YGGCCR	1 cut(s)	904
Eam1104I	CTCTTC	2 cut(s)	181, 717
EarI	CTCTTC	2 cut(s)	181, 717
Ecl136II	GAGCTC	2 cut(s)	855, 1071
Eco130I	CCWWGG	1 cut(s)	1032
Eco24I	GRGCYC	2 cut(s)	857, 1073
Eco53kI	GAGCTC	2 cut(s)	855, 1071
Eco88I	CYCGRG	1 cut(s)	462
EcoICRI	GAGCTC	2 cut(s)	855, 1071
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	1032
EcoT38I	GRGCYC	2 cut(s)	857, 1073
ErhI	CCWWGG	1 cut(s)	1032
FaeI	CATG	4 cut(s)	482, 1036, 1270, 1367
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	4 cut(s)	478, 1032, 1266, 1363
Fnu4HI	GCNGC	8 cut(s)	138, 156, 234, 560, 1017, 1089, 1092, 1200
FokI	GGATG	3 cut(s)	482, 874, 978
FriOI	GRGCYC	2 cut(s)	857, 1073
Fsp4HI	GCNGC	8 cut(s)	138, 156, 234, 560, 1017, 1089, 1092, 1200
FspBI	CTAG	5 cut(s)	329, 542, 576, 1196, 1359
GluI	GCNGC	8 cut(s)	138, 156, 234, 560, 1017, 1089, 1092, 1200
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	4 cut(s)	140, 906, 1123, 1233
HapII	CCGG	2 cut(s)	83, 907
HgaI	GACGC	2 cut(s)	385, 1320
Hin1I	GRCGYC	1 cut(s)	1331
Hin1II	CATG	4 cut(s)	482, 1036, 1270, 1367
HinfI	GANTC	5 cut(s)	170, 241, 247, 299, 877
HpaII	CCGG	2 cut(s)	83, 907
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	4 cut(s)	669, 811, 1178, 1210
Hpy188I	TCNGA	6 cut(s)	75, 246, 254, 1064, 1111, 1155
Hpy188III	TCNNGA	4 cut(s)	266, 296, 464, 542
Hpy8I	GTNNAC	4 cut(s)	669, 811, 1178, 1210
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	7 cut(s)	227, 284, 362, 500, 617, 744, 901
HpyCH4III	ACNGT	5 cut(s)	52, 115, 128, 815, 1404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 1043, 1052
HpyF3I	CTNAG	2 cut(s)	97, 563
Hsp92I	GRCGYC	1 cut(s)	1331
Hsp92II	CATG	4 cut(s)	482, 1036, 1270, 1367
KpnI	GGTACC	1 cut(s)	798
Kzo9I	GATC	4 cut(s)	538, 593, 700, 1059
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	410, 860
Lsp1109I	GCAGC	7 cut(s)	142, 245, 546, 1003, 1075, 1078, 1186
LweI	GCATC	5 cut(s)	42, 151, 635, 1028, 1204
MaeI	CTAG	5 cut(s)	329, 542, 576, 1196, 1359
MaeIII	GTNAC	3 cut(s)	296, 815, 874
MalI	GATC	4 cut(s)	540, 595, 702, 1061
MboI	GATC	4 cut(s)	538, 593, 700, 1059
MboII	GAAGA	4 cut(s)	168, 347, 391, 734
MfeI	CAATTG	4 cut(s)	165, 687, 704, 1203
MhlI	GDGCHC	4 cut(s)	729, 857, 1073, 1344
MluCI	AATT	5 cut(s)	76, 165, 687, 704, 1203
MlyI	GAGTC	3 cut(s)	164, 293, 871
MmeI	TCCRAC	2 cut(s)	277, 735
MnlI	CCTC	6 cut(s)	161, 184, 271, 382, 1244, 1266
MseI	TTAA	2 cut(s)	1244, 1352
MslI	CAYNNNNRTG	2 cut(s)	1297, 1368
MspA1I	CMGCKG	2 cut(s)	920, 1250
MspCI	CTTAAG	1 cut(s)	1351
MspI	CCGG	2 cut(s)	83, 907
MspR9I	CCNGG	2 cut(s)	83, 447
MunI	CAATTG	4 cut(s)	165, 687, 704, 1203
Mva1269I	GAATGC	2 cut(s)	69, 208
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	161, 1043, 1052
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	1032
NdeII	GATC	4 cut(s)	538, 593, 700, 1059
NlaIII	CATG	4 cut(s)	482, 1036, 1270, 1367
NlaIV	GGNNCC	2 cut(s)	412, 796
NmeAIII	GCCGAG	1 cut(s)	710
NmuCI	GTSAC	2 cut(s)	296, 874
NspI	RCATGY	1 cut(s)	1367
NspV	TTCGAA	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	717
PctI	GAATGC	2 cut(s)	69, 208
PfeI	GAWTC	2 cut(s)	241, 247
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	8 cut(s)	139, 157, 235, 561, 1018, 1090, 1093, 1201
PleI	GAGTC	3 cut(s)	164, 293, 871
PpsI	GAGTC	3 cut(s)	164, 293, 871
Psp124BI	GAGCTC	2 cut(s)	857, 1073
Psp6I	CCWGG	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	412, 796
PspPI	GGNCC	1 cut(s)	1121
PsrI	GAACNNNNNNTAC	2 cut(s)	45, 77
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	389
PvuII	CAGCTG	2 cut(s)	920, 1250
RsaI	GTAC	4 cut(s)	668, 796, 924, 1030
RsaNI	GTAC	4 cut(s)	667, 795, 923, 1029
RseI	CAYNNNNRTG	2 cut(s)	1297, 1368
SacI	GAGCTC	2 cut(s)	857, 1073
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	1244, 1352
SatI	GCNGC	8 cut(s)	138, 156, 234, 560, 1017, 1089, 1092, 1200
Sau3AI	GATC	4 cut(s)	538, 593, 700, 1059
Sau96I	GGNCC	1 cut(s)	1121
SchI	GAGTC	3 cut(s)	164, 293, 871
ScrFI	CCNGG	2 cut(s)	83, 447
SduI	GDGCHC	4 cut(s)	729, 857, 1073, 1344
SfaNI	GCATC	5 cut(s)	42, 151, 635, 1028, 1204
SfcI	CTRYAG	2 cut(s)	156, 228
SfuI	TTCGAA	1 cut(s)	649
SmiMI	CAYNNNNRTG	2 cut(s)	1297, 1368
SmlI	CTYRAG	1 cut(s)	1351
SmoI	CTYRAG	1 cut(s)	1351
Sse9I	AATT	5 cut(s)	76, 165, 687, 704, 1203
SsiI	CCGC	2 cut(s)	137, 499
SspMI	CTAG	5 cut(s)	329, 542, 576, 1196, 1359
SstI	GAGCTC	2 cut(s)	857, 1073
StyD4I	CCNGG	2 cut(s)	81, 445
StyI	CCWWGG	1 cut(s)	1032
TaaI	ACNGT	5 cut(s)	52, 115, 128, 815, 1404
TaqI	TCGA	4 cut(s)	267, 528, 649, 1380
TasI	AATT	5 cut(s)	76, 165, 687, 704, 1203
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	241, 247
Tru1I	TTAA	2 cut(s)	1244, 1352
Tru9I	TTAA	2 cut(s)	1244, 1352
TscAI	CASTG	4 cut(s)	120, 1057, 1062, 1234
TseFI	GTSAC	2 cut(s)	296, 874
TseI	GCWGC	7 cut(s)	155, 233, 559, 1016, 1088, 1091, 1199
Tsp45I	GTSAC	2 cut(s)	296, 874
TspDTI	ATGAA	3 cut(s)	508, 876, 1069
TspRI	CASTG	4 cut(s)	120, 1057, 1062, 1234
Van91I	CCANNNNNTGG	1 cut(s)	284
Vha464I	CTTAAG	1 cut(s)	1351
XapI	RAATTY	1 cut(s)	76
XbaI	TCTAGA	1 cut(s)	541
XceI	RCATGY	1 cut(s)	1367
XspI	CTAG	5 cut(s)	329, 542, 576, 1196, 1359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.