Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002097

Physical Location & Seq

Genomic Coordinates Reverse (-)

11648124 .. 11648378

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0147300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCCACCATCATCATGGATAGCGCCAACGCCATCGTCCTCGACATCAGCTTCCCTGTTCATCTGGTCGTCGAGTTGCAGAGGCACCAGGCCAGCTTCAACGCCGTTGCTTGGGCCCCGCACAGCTCTTGCCACATCTGCACTGCCGGGGACGACTCGCAGGCCCTCACCGACCTCTCCTCCATGGCCCAACCCGTCGAGGGTGGCCTCGATCCCATTCTGGCCTACACTTCCGTCTGCCGGGGCAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like PUCC

Protein Analysis

84

Amino Acids

8.94

Weight (kDa)

4.75

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19450 AT4G19450 AT5G45275
fragaria_vesca	FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_5g24410 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730 FvH4_7g07730
malus_domestica	MD02G1233200.v1.1 MD06G1022100.v1.1 MD07G1080400.v1.1 MD16G1287800.v1.1
prunus_persica	Prupe.2G104800_v2.0.a1 Prupe.5G016300_v2.0.a1
pyrus_communis	pycom06g01600 pycom07g06400
rosa_chinensis	RchiOBHm_Chr1g0342361 RchiOBHm_Chr7g0214811
rosa_laevigata	RLG00000002719 RLG00000002720 RLG00000029156
rosa_multiflora	Rmu_co8462433.1_g000001 Rmu_sc0002308.1_g000032 Rmu_sc0012155.1_g000010
rosa_roxburghii	Rroxscaffold_3G00245010 Rroxscaffold_4G00312980
rosa_rugosa	Rorug01G0151600.1 Rorug07G0147200 Rorug07G0147300 Rorug07G0147400
rosa_samantha	Rh1AG166000 Rh1BG132500 Rh1CG154600 Rh1DG167400 Rh7AG284200 Rh7BG275100 Rh7CG303600 Rh7DG287500
rosa_wichuraiana	Rw1G013870 Rw7G024250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	84
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	206
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	3 cut(s)	111, 200, 240
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	51, 96, 126
AluI	AGCT	3 cut(s)	51, 96, 126
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	7 cut(s)	3, 90, 114, 162, 186, 205, 222
ApaI	GGGCCC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	4 cut(s)	114, 115, 163, 187
AsuC2I	CCSGG	2 cut(s)	148, 242
AsuHPI	GGTGA	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	118
BccI	CCATC	2 cut(s)	17, 41
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	89
BcnI	CCSGG	2 cut(s)	148, 242
BfoI	RGCGCY	1 cut(s)	27
Bme1390I	CCNGG	3 cut(s)	89, 148, 242
BmgT120I	GGNCC	4 cut(s)	114, 115, 163, 187
BmiI	GGNNCC	3 cut(s)	86, 116, 117
BmrFI	CCNGG	3 cut(s)	89, 148, 242
BpuMI	CCSGG	2 cut(s)	148, 242
BsaJI	CCNNGG	3 cut(s)	147, 183, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 200, 240
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	3 cut(s)	147, 183, 241
BseLI	CCNNNNNNNGG	3 cut(s)	111, 200, 240
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	7 cut(s)	5, 92, 116, 164, 188, 207, 224
BshNI	GGYRCC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	147, 241
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	3 cut(s)	111, 200, 240
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	7 cut(s)	5, 92, 116, 164, 188, 207, 224
Bsp120I	GGGCCC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	211
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	7 cut(s)	5, 92, 116, 164, 188, 207, 224
BspLI	GGNNCC	3 cut(s)	86, 116, 117
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	84
BssECI	CCNNGG	3 cut(s)	147, 183, 241
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	94, 162
BstDSI	CCRYGG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	3 cut(s)	87, 146, 240
BstSLI	GKGCMC	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuRI	GGCC	7 cut(s)	5, 92, 116, 164, 188, 207, 224
BtgI	CCRYGG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	94, 162
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	4 cut(s)	114, 115, 163, 187
CviAII	CATG	2 cut(s)	16, 184
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	118
EcoO109I	RGGNCCY	2 cut(s)	115, 163
EcoRII	CCWGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	19, 187
FaiI	YATR	2 cut(s)	17, 185
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	2 cut(s)	15, 183
FauI	CCCGC	1 cut(s)	126
FriOI	GRGCYC	1 cut(s)	118
GlaI	GCGC	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	7 cut(s)	5, 92, 116, 164, 188, 207, 224
HapII	CCGG	2 cut(s)	147, 241
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	19, 187
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	2 cut(s)	147, 241
HphI	GGTGA	1 cut(s)	160
Hpy99I	CGWCG	2 cut(s)	74, 200
HpyCH4V	TGCA	2 cut(s)	79, 141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	19, 187
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	8 cut(s)	50, 69, 74, 101, 106, 146, 160, 206
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	7 cut(s)	50, 75, 176, 185, 190, 193, 218
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	147, 241
MspR9I	CCNGG	3 cut(s)	89, 148, 242
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	148, 242
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	19, 187
NlaIV	GGNNCC	3 cut(s)	86, 116, 117
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	86, 116, 117
PspOMI	GGGCCC	1 cut(s)	114
PspPI	GGNCC	4 cut(s)	114, 115, 163, 187
RseI	CAYNNNNRTG	1 cut(s)	14
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	4 cut(s)	114, 115, 163, 187
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	89, 148, 242
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	4 cut(s)	53, 98, 128, 177
SmiMI	CAYNNNNRTG	1 cut(s)	14
SsiI	CCGC	1 cut(s)	119
StyD4I	CCNGG	3 cut(s)	87, 146, 240
StyI	CCWWGG	1 cut(s)	183
TaqI	TCGA	4 cut(s)	42, 72, 198, 210
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.