AT5G54390

PAP-specific phosphatase HAL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002929
Physical Location & Seq
Forward (+)
22085998 .. 22088094
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54390.1

Sequence Viewer

Length: 1122 bp
ATGGCGGTGGACTCCTTAGAAACGGAGATTGACACGGCGGTGCGTGTTGTCCACCTCGCTTCTTCTCTCTGTGTTAAAGTTCAAGAGAAGCTTCATCTTCCTAACGGTGGTCACGTTAAGTCTAAAGACGATGATTCCCCTGTCACCGTCGCTGATTTTGGTGTACAAGCAATTGTGAGCTGGGTTTTAGCTGAAGTGTTTGGTGATCAAAACCTTTCAATTGTTGCTGAAGAAGACACTGAGACACTCTCTGAGGCTGATTCTTTAGGTCTTTTAGGAGCTGTGTCGAATGCGGTTAATGAAGCATTGTCCGAAGCTCAGAACTACGGGCTTCCGAAGCCAGTTAAGCCATTGGGGTCTAGTGAAATTCTTAAGGCTATTAGTAGATGTAACTCTGTTGGAGGACCTAAAGGAAGGCATTGGGTTCTTGATCCTGTTGATGGAACGTTAGGGTTTGTTCGTGGGGATCAGTATGCTGTTGCTTTAGCTTTGATAGAGAATGGTAAAGTTCTTTTGGGTGTACTAGGATGTCCTAATTATCCGGTTAAGAAAGAATGTTTAAGTAATGGTTGTAACCAAGCTATGAAGACGAAAGCTGTTGCTGGTTCAGTATCGAAAGGATGTGTTATGTATGCAAAGAGAGGTAGTGGTCAAGCTTGGATGCAACCTTTGATCGTTGGAGGAATACCAGAATCTGCAACACTTCTTAAGGTTTCTTCAGTTGATGATCCGGTTTTAGCTACAGTTTGTGAGCCAGTAGAGAGAGCAAACTCAAACCACTTGTTCACTGCAGGACTTGCCAATAGCATGGGAGTTAGAAAGCAGCCTATGCGAGTGTATAGCATGGTGAAATATGCAGCGATTGCACGTGGAGACGCTGAAGTGTTTATGAAGTTTGCACAGTCAAGTTACAAAGAGAAGATATGGGATCACGCAGCTGGAGTTGTTATTGTGGAAGAAGCTGGTGGTGTGGTGACTGATGCGGGAGGGAGAAACTTAGACTTCTCGAAAGGTGTTTACTTGGAAGGTCTTGACCGTGGAATCATCGCATGTTCTGGTCAAGTTTTACATGAGAAGATTATAGGTGCTGTTTATGCTAGTTGGGAATCTTCCAGTCTCTGA

Protein Analysis

373

Amino Acids

39.37

Weight (kDa)

5.47

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 45 - 367 1.2e-49 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 38, 293, 983
AclI AACGTT 1 cut(s) 446
AclWI GGATC 4 cut(s) 425, 474, 722, 936
AcsI RAATTY 1 cut(s) 366
AcuI CTGAAG 4 cut(s) 213, 249, 702, 900
AcvI CACGTG 1 cut(s) 869
AfaI GTAC 2 cut(s) 165, 522
AfiI CCNNNNNNNGG 2 cut(s) 107, 440
AflII CTTAAG 2 cut(s) 371, 707
AgsI TTSAA 2 cut(s) 83, 219
AleI CACNNNNGTG 1 cut(s) 38
Alw26I GTCTC 2 cut(s) 236, 867
AlwI GGATC 4 cut(s) 425, 474, 722, 936
AlwNI CAGNNNCTG 2 cut(s) 695, 1119
ApeKI GCWGC 3 cut(s) 823, 857, 935
ApoI RAATTY 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 4 cut(s) 136, 215, 859, 985
AvaII GGWCC 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 869
BbsI GAAGAC 2 cut(s) 240, 593
BbvI GCAGC 3 cut(s) 835, 869, 947
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 51
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 236, 867
BfaI CTAG 3 cut(s) 360, 524, 1098
BfmI CTRYAG 2 cut(s) 741, 789
BfrI CTTAAG 2 cut(s) 371, 707
BisI GCNGC 3 cut(s) 824, 858, 936
BlsI GCNGC 3 cut(s) 825, 859, 937
Bme18I GGWCC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 404
BmsI GCATC 2 cut(s) 651, 970
BpiI GAAGAC 2 cut(s) 240, 593
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 1 cut(s) 960
BsaAI YACGTR 1 cut(s) 869
BsaJI CCNNGG 1 cut(s) 1036
BsaWI WCCGGW 2 cut(s) 541, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 440
Bse1I ACTGG 3 cut(s) 341, 755, 1113
BseDI CCNNGG 1 cut(s) 1036
BseGI GGATG 3 cut(s) 533, 626, 666
BseLI CCNNNNNNNGG 2 cut(s) 107, 440
BseMII CTCAG 3 cut(s) 231, 243, 332
BseNI ACTGG 3 cut(s) 341, 755, 1113
BseXI GCAGC 3 cut(s) 835, 869, 947
BseYI CCCAGC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 542, 731
BslI CCNNNNNNNGG 2 cut(s) 107, 440
BsmAI GTCTC 2 cut(s) 236, 867
BsmBI CGTCTC 1 cut(s) 867
BsmI GAATGC 1 cut(s) 295
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 6 cut(s) 205, 430, 466, 672, 727, 928
BspACI CCGC 4 cut(s) 5, 38, 293, 983
BspCNI CTCAG 3 cut(s) 232, 244, 331
BspMAI CTGCAG 1 cut(s) 793
BspPI GGATC 4 cut(s) 425, 474, 722, 936
BspTI CTTAAG 2 cut(s) 371, 707
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 3 cut(s) 341, 755, 1113
BssECI CCNNGG 1 cut(s) 1036
BssMI GATC 6 cut(s) 205, 430, 466, 672, 727, 928
Bst4CI ACNGT 5 cut(s) 107, 148, 745, 903, 1037
BstAFI CTTAAG 2 cut(s) 371, 707
BstAPI GCANNNNNTGC 3 cut(s) 797, 829, 863
BstAUI TGTACA 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 869
BstDEI CTNAG 5 cut(s) 16, 240, 252, 318, 997
BstDSI CCRYGG 1 cut(s) 1036
BstF5I GGATG 3 cut(s) 533, 626, 666
BstKTI GATC 6 cut(s) 208, 433, 469, 675, 730, 931
BstMAI GTCTC 2 cut(s) 236, 867
BstMBI GATC 6 cut(s) 205, 430, 466, 672, 727, 928
BstMWI GCNNNNNNNGC 6 cut(s) 337, 346, 797, 829, 863, 1094
BstNSI RCATGY 1 cut(s) 1053
BstSFI CTRYAG 2 cut(s) 741, 789
BstV1I GCAGC 3 cut(s) 835, 869, 947
BstV2I GAAGAC 2 cut(s) 240, 593
BstXI CCANNNNNNTGG 1 cut(s) 808
BtgI CCRYGG 1 cut(s) 1036
BtgZI GCGATG 1 cut(s) 1030
BtsCI GGATG 3 cut(s) 533, 626, 666
BtsI GCAGTG 1 cut(s) 786
BtsIMutI CAGTG 2 cut(s) 237, 786
CaiI CAGNNNCTG 2 cut(s) 695, 1119
Cfr13I GGNCC 1 cut(s) 404
CseI GACGC 1 cut(s) 884
Csp6I GTAC 2 cut(s) 164, 521
CviAII CATG 4 cut(s) 808, 844, 1050, 1070
CviQI GTAC 2 cut(s) 164, 521
DdeI CTNAG 5 cut(s) 16, 240, 252, 318, 997
DpnI GATC 6 cut(s) 207, 432, 468, 674, 729, 930
DpnII GATC 6 cut(s) 205, 430, 466, 672, 727, 928
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 4 cut(s) 213, 249, 702, 900
Eco72I CACGTG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 404
Esp3I CGTCTC 1 cut(s) 867
FaeI CATG 4 cut(s) 811, 847, 1053, 1073
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 4 cut(s) 807, 843, 1049, 1069
FauI CCCGC 1 cut(s) 976
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 824, 858, 936
FokI GGATG 3 cut(s) 540, 633, 673
Fsp4HI GCNGC 3 cut(s) 824, 858, 936
FspBI CTAG 3 cut(s) 360, 524, 1098
GluI GCNGC 3 cut(s) 824, 858, 936
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 960
HapII CCGG 2 cut(s) 542, 731
HgaI GACGC 1 cut(s) 884
Hin1II CATG 4 cut(s) 811, 847, 1053, 1073
HindIII AAGCTT 2 cut(s) 89, 654
HinfI GANTC 6 cut(s) 11, 134, 260, 692, 1041, 1106
HpaII CCGG 2 cut(s) 542, 731
HphI GGTGA 4 cut(s) 136, 215, 859, 985
Hpy166II GTNNAC 6 cut(s) 10, 52, 164, 521, 786, 1018
Hpy188I TCNGA 5 cut(s) 253, 313, 321, 336, 1121
Hpy188III TCNNGA 4 cut(s) 83, 428, 1006, 1031
Hpy8I GTNNAC 6 cut(s) 10, 52, 164, 521, 786, 1018
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 408, 1019
HpyCH4III ACNGT 5 cut(s) 107, 148, 745, 903, 1037
HpyCH4IV ACGT 3 cut(s) 114, 446, 868
HpyCH4V TGCA 7 cut(s) 635, 664, 698, 791, 857, 866, 899
HpyF10VI GCNNNNNNNGC 6 cut(s) 337, 346, 797, 829, 863, 1094
HpyF3I CTNAG 5 cut(s) 16, 240, 252, 318, 997
HpySE526I ACGT 3 cut(s) 114, 446, 868
Hsp92II CATG 4 cut(s) 811, 847, 1053, 1073
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 6 cut(s) 205, 430, 466, 672, 727, 928
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 3 cut(s) 835, 869, 947
LweI GCATC 2 cut(s) 651, 970
MaeI CTAG 3 cut(s) 360, 524, 1098
MaeII ACGT 3 cut(s) 114, 446, 868
MaeIII GTNAC 6 cut(s) 110, 142, 389, 572, 908, 973
MalI GATC 6 cut(s) 207, 432, 468, 674, 729, 930
MboI GATC 6 cut(s) 205, 430, 466, 672, 727, 928
MfeI CAATTG 2 cut(s) 171, 219
MluCI AATT 4 cut(s) 171, 219, 366, 535
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 379, 658
MnlI CCTC 6 cut(s) 65, 247, 395, 635, 674, 980
MseI TTAA 8 cut(s) 75, 117, 297, 345, 372, 546, 560, 708
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 938
MspCI CTTAAG 2 cut(s) 371, 707
MspI CCGG 2 cut(s) 542, 731
MunI CAATTG 2 cut(s) 171, 219
Mva1269I GAATGC 1 cut(s) 295
MwoI GCNNNNNNNGC 6 cut(s) 337, 346, 797, 829, 863, 1094
NdeII GATC 6 cut(s) 205, 430, 466, 672, 727, 928
NlaIII CATG 4 cut(s) 811, 847, 1053, 1073
NmuCI GTSAC 3 cut(s) 110, 142, 973
NspI RCATGY 1 cut(s) 1053
OliI CACNNNNGTG 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 5 cut(s) 134, 260, 692, 1041, 1106
PkrI GCNGC 3 cut(s) 825, 859, 937
PleI GAGTC 1 cut(s) 5
PmaCI CACGTG 1 cut(s) 869
PmlI CACGTG 1 cut(s) 869
PpsI GAGTC 1 cut(s) 5
Ppu21I YACGTR 1 cut(s) 869
PpuMI RGGWCCY 1 cut(s) 404
Psp1406I AACGTT 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 404
PspCI CACGTG 1 cut(s) 869
PspFI CCCAGC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 404
PspPPI RGGWCCY 1 cut(s) 404
PstI CTGCAG 1 cut(s) 793
PstNI CAGNNNCTG 2 cut(s) 695, 1119
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 2 cut(s) 165, 522
RsaNI GTAC 2 cut(s) 164, 521
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 8 cut(s) 75, 117, 297, 345, 372, 546, 560, 708
SatI GCNGC 3 cut(s) 824, 858, 936
Sau3AI GATC 6 cut(s) 205, 430, 466, 672, 727, 928
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 1 cut(s) 5
SfaNI GCATC 2 cut(s) 651, 970
SfcI CTRYAG 2 cut(s) 741, 789
SinI GGWCC 1 cut(s) 404
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 2 cut(s) 371, 707
SmoI CTYRAG 2 cut(s) 371, 707
Sse9I AATT 4 cut(s) 171, 219, 366, 535
SsiI CCGC 4 cut(s) 5, 38, 293, 983
SspMI CTAG 3 cut(s) 360, 524, 1098
TaaI ACNGT 5 cut(s) 107, 148, 745, 903, 1037
TaiI ACGT 3 cut(s) 117, 449, 871
TaqI TCGA 3 cut(s) 287, 614, 1007
TasI AATT 4 cut(s) 171, 219, 366, 535
TatI WGTACW 2 cut(s) 163, 520
TfiI GAWTC 5 cut(s) 134, 260, 692, 1041, 1106
Tru1I TTAA 8 cut(s) 75, 117, 297, 345, 372, 546, 560, 708
Tru9I TTAA 8 cut(s) 75, 117, 297, 345, 372, 546, 560, 708
TscAI CASTG 2 cut(s) 244, 793
TseFI GTSAC 3 cut(s) 110, 142, 973
TseI GCWGC 3 cut(s) 823, 857, 935
Tsp45I GTSAC 3 cut(s) 110, 142, 973
TspDTI ATGAA 4 cut(s) 83, 315, 599, 905
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 2 cut(s) 244, 793
Vha464I CTTAAG 2 cut(s) 371, 707
VpaK11BI GGWCC 1 cut(s) 404
XapI RAATTY 1 cut(s) 366
XceI RCATGY 1 cut(s) 1053
XspI CTAG 3 cut(s) 360, 524, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.