Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002929

Physical Location & Seq

Genomic Coordinates Reverse (-)

30362820 .. 30367156

Gene Structure 4337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGGACGATAAGTACGCTAAGGAGTTGGACGTGGCCGTTAGAGTGGTGCACATGGCTTGTGCTCTGTGTCAGAGAGTTCAAGAGGGTTTGGTTTCAGCTAGCACTGACCAGGTGAAGTCCAAAGACGATGATTCCCCTGTAACAATTGCAGATTGGAGTGTCCAAGCCACTGTTAGCTGGATACTATCTGAATTCTTTGGGAGTCAAAATGTATCCATTATTGCTGAAGAAGATGTACAAACTCTCTCTAAGGCTGACTCAGTAGGTTTGCTGCAAGCTGTTGTGAATACTGTGAATGAATGCTTAGCTGGAGCACCTAAGTATGGTCTTAAAGGTCCATCAAAAGCCCTCACGACATCTCAAATTCTTGAGGCTATCAGCCGATGCAACTCAGTAGGAGGCCCCAAAGGAAGGCACTGGGTACTGGATCCTGTTGATGGAACATTAGGGTTTGTGCGCGGGGATCAATATGCTGTAGCTCTAGCCTTGATTGAGGATGGAAAAGCTGTTATTGGGGTACTAGGGTGCCCTAATTACCCAATGAAAAAGGAATTGCTCAATTATCATTATCAGTACCATGAAGCCATGTCAAAGTCATCTCCACCTTCTCCTGATATATGGGAAAGAGGTTGTGTGATGTATGCGAGAAAAGACACTGGGGAGGCATGGATGCAGCCACCCATCCATGGAGATAAGAAGTTTGAGTGGCCAAATTCTGCAAAACTTATTCGGGTTTCTTCCATCGATGACCCAGCACTGGCTACTAGTTGTGAACCTGTGGAGAAAGCAAATTCAAACCACTCCTTCACAGAAGAGCTTGCTCACAGCGTAGGGCTAAGAAAGAAGCCCATGCGTGTCTATAGCATGGTGAAATATGCAGCCATAGCTCGGGGAGATGCTGAGCTGTTCATGAAGTTTGCAAGGACAGGGTACAAGGAGAAGATATGGGATCATGCTGCAGGTGTTGTCATTGTAGAAGAGGCTGGGGGTGTGGTCACTGATGCTGGAGGGCGGCCCCTGGACTTTTCTAAGGGACCATACTTAGAAGGCCTTGATAGAGGAATAATTGTTTGTTCTGGGGCCACACTGCATGAGAAAATCATTGATGCTGTTTATGCCAGCTGGGACTCTTCTAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

381

Amino Acids

41.46

Weight (kDa)

5.46

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	45 - 374	6.1e-44	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54390
fragaria_vesca	FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g20770 FvH4_3g20770
malus_domestica	MD03G1221700.v1.1 MD05G1323300.v1.1 MD10G1301100.v1.1 MD11G1239100.v1.1
prunus_persica	Prupe.4G039300_v2.0.a1 Prupe.4G187800_v2.0.a1
pyrus_communis	pycom03g17050 pycom05g29760 pycom10g25400 pycom11g21080
rosa_chinensis	RchiOBHm_Chr5g0006821 RchiOBHm_Chr5g0035001
rosa_laevigata	RLG00000031431 RLG00000033591
rosa_multiflora	Rmu_sc0001044.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045390 Rroxscaffold_1G00069230
rosa_rugosa	Rorug04G0424700 Rorug05G0149400 Rorug05G0149500
rosa_samantha	Rh5AG052400 Rh5AG242500 Rh5BG051400 Rh5BG242100 Rh5CG060000 Rh5CG273500 Rh5DG050600 Rh5DG250600
rosa_wichuraiana	Rw5G005220 Rw5G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	953
Acc36I	ACCTGC	1 cut(s)	953
AccB1I	GGYRCC	1 cut(s)	528
AccII	CGCG	1 cut(s)	462
AciI	CCGC	2 cut(s)	462, 1015
AclWI	GGATC	4 cut(s)	425, 438, 474, 960
AcoI	YGGCCR	2 cut(s)	36, 710
AcsI	RAATTY	4 cut(s)	194, 366, 715, 793
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	6 cut(s)	17, 240, 426, 522, 578, 935
AfiI	CCNNNNNNNGG	6 cut(s)	326, 414, 440, 689, 760, 891
AgsI	TTSAA	2 cut(s)	83, 798
AhlI	ACTAGT	1 cut(s)	767
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	111, 1020
Alw21I	GWGCWC	3 cut(s)	54, 67, 319
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	425, 438, 474, 960
Ama87I	CYCGRG	1 cut(s)	891
AoxI	GGCC	6 cut(s)	36, 403, 710, 1016, 1051, 1083
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	4 cut(s)	274, 676, 881, 959
ApoI	RAATTY	4 cut(s)	194, 366, 715, 793
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	5 cut(s)	338, 404, 1017, 1037, 1083
AsuHPI	GGTGA	2 cut(s)	127, 883
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	891
AvaII	GGWCC	2 cut(s)	338, 1037
BaeGI	GKGCMC	2 cut(s)	54, 533
BaeI	ACNNNNGTAYC	2 cut(s)	512, 545
BalI	TGGCCA	1 cut(s)	712
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	222, 254
Bbv12I	GWGCWC	3 cut(s)	54, 67, 319
BbvI	GCAGC	4 cut(s)	261, 688, 893, 946
BccI	CCATC	5 cut(s)	349, 434, 494, 692, 752
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	113, 1022
BciVI	GTATCC	2 cut(s)	177, 226
BcuI	ACTAGT	1 cut(s)	767
BfaI	CTAG	4 cut(s)	102, 485, 524, 768
BfmI	CTRYAG	3 cut(s)	477, 862, 960
BfuAI	ACCTGC	1 cut(s)	953
BfuI	GTATCC	2 cut(s)	177, 226
BisI	GCNGC	5 cut(s)	275, 677, 882, 960, 1016
BlpI	GCTNAGC	2 cut(s)	307, 903
BlsI	GCNGC	5 cut(s)	276, 678, 883, 961, 1017
Bme1390I	CCNGG	2 cut(s)	113, 1022
Bme18I	GGWCC	2 cut(s)	338, 1037
BmeT110I	CYCGRG	1 cut(s)	891
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	5 cut(s)	338, 404, 1017, 1037, 1083
BmiI	GGNNCC	6 cut(s)	406, 432, 530, 1019, 1038, 1084
BmrFI	CCNGG	2 cut(s)	113, 1022
BmrI	ACTGGG	2 cut(s)	430, 669
BmsI	GCATC	5 cut(s)	377, 663, 889, 994, 1099
BmtI	GCTAGC	1 cut(s)	105
BmuI	ACTGGG	2 cut(s)	430, 669
BpmI	CTGGAG	2 cut(s)	333, 1029
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu1102I	GCTNAGC	2 cut(s)	307, 903
BpuEI	CTTGAG	1 cut(s)	392
Bsa29I	ATCGAT	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	688, 1020
Bsc4I	CCNNNNNNNGG	6 cut(s)	326, 414, 440, 689, 760, 891
Bse1I	ACTGG	4 cut(s)	425, 432, 664, 765
BseBI	CCWGG	2 cut(s)	113, 1022
BseCI	ATCGAT	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	688, 1020
BseGI	GGATG	3 cut(s)	505, 678, 684
BseLI	CCNNNNNNNGG	6 cut(s)	326, 414, 440, 689, 760, 891
BseMII	CTCAG	3 cut(s)	276, 408, 894
BseNI	ACTGG	4 cut(s)	425, 432, 664, 765
BseSI	GKGCMC	2 cut(s)	54, 533
BseXI	GCAGC	4 cut(s)	261, 688, 893, 946
BseYI	CCCAGC	3 cut(s)	754, 986, 1125
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	6 cut(s)	38, 405, 712, 1018, 1053, 1085
BshNI	GGYRCC	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	747
BsiHKAI	GWGCWC	3 cut(s)	54, 67, 319
BsiHKCI	CYCGRG	1 cut(s)	891
BslFI	GGGAC	2 cut(s)	1050, 1142
BslI	CCNNNNNNNGG	6 cut(s)	326, 414, 440, 689, 760, 891
BsmFI	GGGAC	2 cut(s)	1050, 1142
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	6 cut(s)	38, 405, 712, 1018, 1053, 1085
BsoBI	CYCGRG	1 cut(s)	891
Bsp1286I	GDGCHC	4 cut(s)	54, 67, 319, 533
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	430, 466, 952
Bsp1720I	GCTNAGC	2 cut(s)	307, 903
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	2 cut(s)	462, 1015
BspANI	GGCC	6 cut(s)	38, 405, 712, 1018, 1053, 1085
BspCNI	CTCAG	3 cut(s)	275, 407, 895
BspDI	ATCGAT	1 cut(s)	747
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	6 cut(s)	406, 432, 530, 1019, 1038, 1084
BspMAI	CTGCAG	1 cut(s)	964
BspMI	ACCTGC	1 cut(s)	953
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	4 cut(s)	425, 438, 474, 960
BspQI	GCTCTTC	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	4 cut(s)	425, 432, 664, 765
BssECI	CCNNGG	2 cut(s)	688, 1020
BssMI	GATC	3 cut(s)	430, 466, 952
BssT1I	CCWWGG	1 cut(s)	688
Bst2UI	CCWGG	2 cut(s)	113, 1022
Bst4CI	ACNGT	2 cut(s)	175, 295
Bst6I	CTCTTC	3 cut(s)	810, 975, 1138
BstAUI	TGTACA	1 cut(s)	238
BstC8I	GCNNGC	4 cut(s)	103, 279, 822, 1123
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	3 cut(s)	505, 678, 684
BstFNI	CGCG	1 cut(s)	462
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	3 cut(s)	433, 469, 955
BstMBI	GATC	3 cut(s)	430, 466, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	887, 1118
BstNI	CCWGG	2 cut(s)	113, 1022
BstSCI	CCNGG	2 cut(s)	111, 1020
BstSFI	CTRYAG	3 cut(s)	477, 862, 960
BstSLI	GKGCMC	2 cut(s)	54, 533
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	4 cut(s)	261, 688, 893, 946
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu15I	ATCGAT	1 cut(s)	747
BsuI	GTATCC	2 cut(s)	177, 226
BsuRI	GGCC	6 cut(s)	38, 405, 712, 1018, 1053, 1085
BsuTUI	ATCGAT	1 cut(s)	747
BtgI	CCRYGG	1 cut(s)	688
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	505, 678, 684
BtsI	GCAGTG	1 cut(s)	1088
BtsIMutI	CAGTG	7 cut(s)	105, 171, 418, 657, 758, 999, 1088
BveI	ACCTGC	1 cut(s)	953
Cac8I	GCNNGC	4 cut(s)	103, 279, 822, 1123
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	5 cut(s)	338, 404, 1017, 1037, 1083
ClaI	ATCGAT	1 cut(s)	747
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	6 cut(s)	16, 239, 425, 521, 577, 934
CviQI	GTAC	6 cut(s)	16, 239, 425, 521, 577, 934
DpnI	GATC	3 cut(s)	432, 468, 954
DpnII	GATC	3 cut(s)	430, 466, 952
EaeI	YGGCCR	2 cut(s)	36, 710
Eam1104I	CTCTTC	3 cut(s)	810, 975, 1138
EarI	CTCTTC	3 cut(s)	810, 975, 1138
Eco130I	CCWWGG	1 cut(s)	688
Eco147I	AGGCCT	1 cut(s)	1053
Eco47I	GGWCC	2 cut(s)	338, 1037
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	891
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	111, 1020
EcoT14I	CCWWGG	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	688
FaqI	GGGAC	2 cut(s)	1050, 1142
FauI	CCCGC	1 cut(s)	455
Fnu4HI	GCNGC	5 cut(s)	275, 677, 882, 960, 1016
FokI	GGATG	3 cut(s)	512, 671, 685
Fsp4HI	GCNGC	5 cut(s)	275, 677, 882, 960, 1016
FspBI	CTAG	4 cut(s)	102, 485, 524, 768
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	5 cut(s)	275, 677, 882, 960, 1016
GsaI	CCCAGC	3 cut(s)	758, 990, 1129
GsuI	CTGGAG	2 cut(s)	333, 1029
HaeIII	GGCC	6 cut(s)	38, 405, 712, 1018, 1053, 1085
HhaI	GCGC	1 cut(s)	462
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HinfI	GANTC	4 cut(s)	134, 205, 260, 1130
HphI	GGTGA	2 cut(s)	127, 883
Hpy166II	GTNNAC	2 cut(s)	52, 776
Hpy188I	TCNGA	2 cut(s)	75, 193
Hpy188III	TCNNGA	5 cut(s)	83, 355, 371, 614, 913
Hpy8I	GTNNAC	2 cut(s)	52, 776
HpyAV	CCTTC	4 cut(s)	408, 618, 817, 1043
HpyCH4III	ACNGT	2 cut(s)	175, 295
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	887, 1118
HpySE526I	ACGT	1 cut(s)	33
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	430, 466, 952
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	4 cut(s)	261, 688, 893, 946
LweI	GCATC	5 cut(s)	377, 663, 889, 994, 1099
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	4 cut(s)	102, 485, 524, 768
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	142, 997
MalI	GATC	3 cut(s)	432, 468, 954
MboI	GATC	3 cut(s)	430, 466, 952
MboII	GAAGA	7 cut(s)	242, 245, 732, 827, 955, 992, 1125
MfeI	CAATTG	1 cut(s)	147
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	4 cut(s)	54, 67, 319, 533
MlsI	TGGCCA	1 cut(s)	712
MluNI	TGGCCA	1 cut(s)	712
MlyI	GAGTC	3 cut(s)	214, 254, 1124
MmeI	TCCRAC	1 cut(s)	9
Mox20I	TGGCCA	1 cut(s)	712
MscI	TGGCCA	1 cut(s)	712
MseI	TTAA	1 cut(s)	333
Msp20I	TGGCCA	1 cut(s)	712
MspA1I	CMGCKG	1 cut(s)	1125
MspR9I	CCNGG	2 cut(s)	113, 1022
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	2 cut(s)	113, 1022
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	887, 1118
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	3 cut(s)	430, 466, 952
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	6 cut(s)	406, 432, 530, 1019, 1038, 1084
NmuCI	GTSAC	1 cut(s)	997
PagI	TCATGA	1 cut(s)	912
PaqCI	CACCTGC	1 cut(s)	953
PceI	AGGCCT	1 cut(s)	1053
PciSI	GCTCTTC	1 cut(s)	810
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	276, 678, 883, 961, 1017
PleI	GAGTC	3 cut(s)	213, 254, 1124
PpsI	GAGTC	3 cut(s)	213, 254, 1124
Psp6I	CCWGG	2 cut(s)	111, 1020
PspFI	CCCAGC	3 cut(s)	754, 986, 1125
PspGI	CCWGG	2 cut(s)	111, 1020
PspN4I	GGNNCC	6 cut(s)	406, 432, 530, 1019, 1038, 1084
PspPI	GGNCC	5 cut(s)	338, 404, 1017, 1037, 1083
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	1125
RsaI	GTAC	6 cut(s)	17, 240, 426, 522, 578, 935
RsaNI	GTAC	6 cut(s)	16, 239, 425, 521, 577, 934
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	5 cut(s)	275, 677, 882, 960, 1016
Sau3AI	GATC	3 cut(s)	430, 466, 952
Sau96I	GGNCC	5 cut(s)	338, 404, 1017, 1037, 1083
SchI	GAGTC	3 cut(s)	214, 254, 1124
ScrFI	CCNGG	2 cut(s)	113, 1022
SduI	GDGCHC	4 cut(s)	54, 67, 319, 533
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	5 cut(s)	377, 663, 889, 994, 1099
SfcI	CTRYAG	3 cut(s)	477, 862, 960
SinI	GGWCC	2 cut(s)	338, 1037
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SpeI	ACTAGT	1 cut(s)	767
SseBI	AGGCCT	1 cut(s)	1053
SsiI	CCGC	2 cut(s)	462, 1015
SspMI	CTAG	4 cut(s)	102, 485, 524, 768
StuI	AGGCCT	1 cut(s)	1053
StyD4I	CCNGG	2 cut(s)	111, 1020
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	2 cut(s)	175, 295
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	747
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	1 cut(s)	1018
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	7 cut(s)	112, 178, 425, 664, 765, 1006, 1095
TseFI	GTSAC	1 cut(s)	997
TseI	GCWGC	4 cut(s)	274, 676, 881, 959
Tsp45I	GTSAC	1 cut(s)	997
TspDTI	ATGAA	5 cut(s)	315, 560, 597, 901, 929
TspRI	CASTG	7 cut(s)	112, 178, 425, 664, 765, 1006, 1095
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	338, 1037
XapI	RAATTY	4 cut(s)	194, 366, 715, 793
XspI	CTAG	4 cut(s)	102, 485, 524, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.