Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002929

Physical Location & Seq

Genomic Coordinates Forward (+)

13866644 .. 13867855

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0149400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATCGGTAAGCGGATGATTCTGAACATTTCTGTGGAGAGTCTAGACGGAGTGAGTCGCATTGAGCCCGAAGGAGGCTGGAAGAACAAGTCACTCAAGTACCACATCAGAGTCAGTTGTACGGTCTGCAAAATAGAGCTCTTCGACTTGTATAATGGGAATATGGTTCCTTTGTATTTGTCTACTGCTTCTTGGTCAAGGGGACTAGATGGTATTGGATATCATAGACCTCTAACTTGCCCTGTATGCAAAGGCCACGGTGGTTTGAGGATTCTGAGAAGAGGAGGGAAACCCATGGTGGATGAAGGAGAGGTGATGCCGGTGATGGAGGTGCAGGTTGTAGGCAACTTTCAGGTGCACAAGGATATCAAATTGTTCTATTTTGGGTGGATGTGTAGAAAGGATGATGATGACTACGACGATGATGATGGCAGTGGGGCGTTATTTGGGCCTTTTCATGTCGACAGAAAGGGGAACTATGCGTTCAAATATATAGTGAATGTTGATGACGATGATGATGAAGAAGATGAAGAAGTGATTCTGCAAATCAAAGGGCTGAAAGGATCTTTGGAGCTCACAGAATGGGAAGAAGAGGTAAAGGGACTCAGGTTCAAGTGTCTGTCTCGGTTGGATTCGGATTCGGATACGGATTCCACCGATTCTGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

223

Amino Acids

25.29

Weight (kDa)

4.76

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54390
fragaria_vesca	FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g20770 FvH4_3g20770
malus_domestica	MD03G1221700.v1.1 MD05G1323300.v1.1 MD10G1301100.v1.1 MD11G1239100.v1.1
prunus_persica	Prupe.4G039300_v2.0.a1 Prupe.4G187800_v2.0.a1
pyrus_communis	pycom03g17050 pycom05g29760 pycom10g25400 pycom11g21080
rosa_chinensis	RchiOBHm_Chr5g0006821 RchiOBHm_Chr5g0035001
rosa_laevigata	RLG00000031431 RLG00000033591
rosa_multiflora	Rmu_sc0001044.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045390 Rroxscaffold_1G00069230
rosa_rugosa	Rorug04G0424700 Rorug05G0149400 Rorug05G0149500
rosa_samantha	Rh5AG052400 Rh5AG242500 Rh5BG051400 Rh5BG242100 Rh5CG060000 Rh5CG273500 Rh5DG050600 Rh5DG250600
rosa_wichuraiana	Rw5G005220 Rw5G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccI	GTMKAC	2 cut(s)	182, 462
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	1 cut(s)	571
AfaI	GTAC	2 cut(s)	101, 121
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	487, 613
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	2 cut(s)	139, 574
AluI	AGCT	2 cut(s)	139, 574
Alw21I	GWGCWC	3 cut(s)	141, 360, 576
Alw26I	GTCTC	1 cut(s)	627
Alw44I	GTGCAC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	571
AoxI	GGCC	2 cut(s)	253, 449
ApaLI	GTGCAC	1 cut(s)	356
Asp700I	GAANNNNTTC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	325, 334
BaeGI	GKGCMC	1 cut(s)	360
BaeI	ACNNNNGTAYC	2 cut(s)	83, 116
BanII	GRGCYC	3 cut(s)	69, 141, 576
Bbv12I	GWGCWC	3 cut(s)	141, 360, 576
BccI	CCATC	3 cut(s)	203, 319, 422
BciVI	GTATCC	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	627
BfaI	CTAG	2 cut(s)	44, 206
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	256, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	256, 294
BseGI	GGATG	4 cut(s)	21, 307, 396, 409
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	266, 619
BseRI	GAGGAG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	255, 451
BsiHKAI	GWGCWC	3 cut(s)	141, 360, 576
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	2 cut(s)	216, 615
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	627
BsmFI	GGGAC	2 cut(s)	216, 615
BsnI	GGCC	2 cut(s)	255, 451
Bsp1286I	GDGCHC	4 cut(s)	69, 141, 360, 576
Bsp143I	GATC	2 cut(s)	3, 563
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	255, 451
BspCNI	CTCAG	2 cut(s)	267, 618
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	571
BspQI	GCTCTTC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	256, 294
BssMI	GATC	2 cut(s)	3, 563
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	124, 260
Bst6I	CTCTTC	3 cut(s)	146, 274, 585
BstDEI	CTNAG	2 cut(s)	275, 605
BstDSI	CCRYGG	2 cut(s)	256, 294
BstF5I	GGATG	4 cut(s)	21, 307, 396, 409
BstKTI	GATC	2 cut(s)	6, 566
BstMAI	GTCTC	1 cut(s)	627
BstMBI	GATC	2 cut(s)	3, 563
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuI	GTATCC	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	255, 451
BtgI	CCRYGG	2 cut(s)	256, 294
BtsCI	GGATG	4 cut(s)	21, 307, 396, 409
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	325
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	100, 120
CviAII	CATG	2 cut(s)	295, 458
CviJI	RGCY	7 cut(s)	67, 78, 139, 255, 451, 556, 574
CviKI_1	RGCY	7 cut(s)	67, 78, 139, 255, 451, 556, 574
CviQI	GTAC	2 cut(s)	100, 120
DdeI	CTNAG	2 cut(s)	275, 605
DpnI	GATC	2 cut(s)	5, 565
DpnII	GATC	2 cut(s)	3, 563
Eam1104I	CTCTTC	3 cut(s)	146, 274, 585
EarI	CTCTTC	3 cut(s)	146, 274, 585
Ecl136II	GAGCTC	2 cut(s)	139, 574
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	3 cut(s)	69, 141, 576
Eco32I	GATATC	2 cut(s)	221, 367
Eco53kI	GAGCTC	2 cut(s)	139, 574
EcoICRI	GAGCTC	2 cut(s)	139, 574
EcoRV	GATATC	2 cut(s)	221, 367
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	3 cut(s)	69, 141, 576
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	298, 461
FaiI	YATR	9 cut(s)	153, 164, 225, 247, 296, 459, 480, 492, 494
FaqI	GGGAC	2 cut(s)	216, 615
FatI	CATG	2 cut(s)	294, 457
FblI	GTMKAC	2 cut(s)	182, 462
FokI	GGATG	4 cut(s)	28, 314, 403, 416
FriOI	GRGCYC	3 cut(s)	69, 141, 576
FspBI	CTAG	2 cut(s)	44, 206
HaeIII	GGCC	2 cut(s)	255, 451
HapII	CCGG	1 cut(s)	320
Hin1II	CATG	2 cut(s)	298, 461
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	2 cut(s)	325, 334
Hpy166II	GTNNAC	3 cut(s)	183, 358, 463
Hpy188I	TCNGA	6 cut(s)	24, 110, 276, 637, 643, 664
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	3 cut(s)	183, 358, 463
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	2 cut(s)	65, 299
HpyCH4III	ACNGT	2 cut(s)	124, 260
HpyCH4V	TGCA	5 cut(s)	129, 249, 334, 358, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	275, 605
Hsp92II	CATG	2 cut(s)	298, 461
Kzo9I	GATC	2 cut(s)	3, 563
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	1 cut(s)	571
LpnPI	CCDG	6 cut(s)	64, 255, 320, 333, 338, 592
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	2 cut(s)	44, 206
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	2 cut(s)	5, 565
MboI	GATC	2 cut(s)	3, 563
MboII	GAAGA	8 cut(s)	94, 133, 291, 533, 536, 542, 599, 602
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	4 cut(s)	69, 141, 360, 576
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	4 cut(s)	49, 64, 120, 597
MmeI	TCCRAC	1 cut(s)	609
MnlI	CCTC	8 cut(s)	68, 240, 261, 275, 278, 304, 322, 586
MroXI	GAANNNNTTC	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	2 cut(s)	3, 563
NlaIII	CATG	2 cut(s)	298, 461
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	90
PciSI	GCTCTTC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	7 cut(s)	19, 271, 538, 632, 638, 650, 659
PleI	GAGTC	4 cut(s)	48, 63, 119, 597
PpsI	GAGTC	4 cut(s)	48, 63, 119, 597
Psp124BI	GAGCTC	2 cut(s)	141, 576
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	563
RsaI	GTAC	2 cut(s)	101, 121
RsaNI	GTAC	2 cut(s)	100, 120
RseI	CAYNNNNRTG	1 cut(s)	32
SacI	GAGCTC	2 cut(s)	141, 576
SalI	GTCGAC	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	3, 563
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	4 cut(s)	49, 64, 120, 597
SduI	GDGCHC	4 cut(s)	69, 141, 360, 576
SetI	ASST	9 cut(s)	141, 232, 315, 333, 339, 357, 576, 597, 611
SfaNI	GCATC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	2 cut(s)	44, 206
SstI	GAGCTC	2 cut(s)	141, 576
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	124, 260
TaqI	TCGA	2 cut(s)	144, 462
TasI	AATT	1 cut(s)	371
TfiI	GAWTC	7 cut(s)	19, 271, 538, 632, 638, 650, 659
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	4 cut(s)	318, 446, 534, 543
TspGWI	ACGGA	2 cut(s)	63, 662
TspRI	CASTG	1 cut(s)	439
VneI	GTGCAC	1 cut(s)	356
XbaI	TCTAGA	1 cut(s)	43
XmiI	GTMKAC	2 cut(s)	182, 462
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	44, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.