pycom05g29760

PAP-specific phosphatase HAL2-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
30134760 .. 30137864
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g29760.2

Sequence Viewer

Length: 1572 bp
ATGTTAAAACCTGAAAGAGAGGATCCTCCTAACCAACATATATGGGCAAATTTGAATTTTTATCCAACGGTTACAAACAGGAGAATCCCTTTAAAGAGAATCGTCTTCTTGGCTATCACCTTCCATTCATTACCCTTTTTGTTGCCACCCTTCCAACGTCACCTAAACCCACACCCCAAATCCACACAAAACTCACACTTTCACTTTCACTCTCACTCTCACACGCAAACACAACGTTCTTCAACCATGGCTATAAAAATCTCACACAATTTGGGACTTGAAATATGGAATAACAACAACTTCATACGCAGCAACAAAACCCACCTCAACTTTTCAGGGAAACTTGGCTACTGCTTATCCAAGTTCGGGAAAACCCGATCCTTCTCTGTAATGGAGGACCTGAAAACTTCGAGTCTTTTGGCCCCGGAGCCTGTGAAAAATTACTCCCAGGAATTGGATGTGGCTGTCAGAGCTGTGCAGTTGGCTTGCTCTCTCTGCCAGAGGGTTCAGAACAGTTTGATTTCGAAGAACGGCGATGGGGTCCAATCCAAAGACGACAATTCCCCTGTCACTATTGCAGATTGGAGCGTCCAAGCAACTGTGAGCTGGATACTGTCAGAGTCTTTTGGGAGCAGCAACGTGTCCATTATTGCTGAAGAAGATATTCAAAATTTGTCCAAAGCAAAGGCAGGTGGAATACTAAAAGATGTAGTGAAAACTGTAAACGAATGTCTAGCTGAAGCGCCTCGTTTTGGGCTTAAAAGTCCGAAAATGGCCCTTGGGACTACAGAGGTTCTTGAAGCCATCAGTCGGTGCAACTCACTTGGAGGCCCTGCTGGGAGATTTTGGACACTTGACCCTGTTGATGGCACGTTGGGTTTTGTACGCGGTGACCAATATGCAATAGCTCTGGCTTTAATAGAGGATGGAGAAGTTGTGCTTGGGGTTCTTGGCTGTCCTAATTACCCAATGAGAAAGGAATGGCTCAATTATCATCACCGGTATCATAGGATGATATCTAAATTGACACCACCAACGTCAGAATCTTGGGACAAAGGCTGTGTGCTTTATGCTAGAAGAGGCAGCGGCGAGGCTTGGATGCAACCGCTGCTCCATGTAAACAAGAATTTAGTGTGGCCAAACTCTGCAAAACCTGTCCGAGTGTCCACCATAGATAATCCATCACTGGCAACATTTTGTGAACCTGTTGAGAAGGCAAATTCGAGTCATTCCTTCACAGAAGGGCTAGCTCACAGCGTTGGGCTTAGGAAGCAGCCACTGCGAGTATACAGCATGGTGAAGTACACAGCCATAGCTCGTGGGGATGCCGAGATTTTTATGAAGTTTTCAAAGGCTGGCTACAAGGAGAAGATTTGGGATCACGCAGCCGGTGTTGTTATCATACAAGAGGCTGGTGGGGTGGTTACAGATGCCGGAGGGCGTCCACTGGACTTTTCAAAGGGCATATACTTGGAAGGTCTTGATCGAGGCGTAGTTGCTAGTGCTGGAGCCAATCTACATGACAAGATCATCGAGGCGGTTGATGCTAGCTGGGACTCCTCCAGTCTATAA

Protein Analysis

524

Amino Acids

57.84

Weight (kDa)

8.92

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 680
Acc36I ACCTGC 1 cut(s) 680
AccB7I CCANNNNNTGG 1 cut(s) 454
AccI GTMKAC 1 cut(s) 1287
AccII CGCG 1 cut(s) 888
AciI CCGC 4 cut(s) 888, 1086, 1106, 1538
AclI AACGTT 1 cut(s) 235
AclWI GGATC 4 cut(s) 17, 30, 372, 1386
AcoI YGGCCR 1 cut(s) 1136
AcsI RAATTY 5 cut(s) 49, 55, 670, 1126, 1219
AcuI CTGAAG 2 cut(s) 675, 759
AcyI GRCGYC 1 cut(s) 1441
AfaI GTAC 2 cut(s) 885, 1304
AfiI CCNNNNNNNGG 5 cut(s) 366, 454, 752, 810, 866
AflIII ACRYGT 1 cut(s) 639
AgeI ACCGGT 1 cut(s) 999
AgsI TTSAA 7 cut(s) 55, 243, 281, 668, 800, 1350, 1458
AjnI CCWGG 1 cut(s) 447
AjuI GAANNNNNNNTTGG 2 cut(s) 924, 956
AluBI AGCT 7 cut(s) 473, 606, 737, 908, 1250, 1316, 1551
AluI AGCT 7 cut(s) 473, 606, 737, 908, 1250, 1316, 1551
AlwI GGATC 4 cut(s) 17, 30, 372, 1386
AlwNI CAGNNNCTG 1 cut(s) 1279
AoxI GGCC 4 cut(s) 420, 774, 829, 1136
ApeKI GCWGC 6 cut(s) 309, 633, 1083, 1108, 1273, 1385
ApoI RAATTY 5 cut(s) 49, 55, 670, 1126, 1219
AsiGI ACCGGT 1 cut(s) 999
Asp700I GAANNNNTTC 1 cut(s) 663
AspLEI GCGC 1 cut(s) 745
AspS9I GGNCC 5 cut(s) 397, 421, 541, 775, 830
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 5 cut(s) 109, 152, 902, 989, 1309
AsuII TTCGAA 1 cut(s) 524
AsuNHI GCTAGC 2 cut(s) 1246, 1547
AvaII GGWCC 2 cut(s) 397, 541
BalI TGGCCA 1 cut(s) 1138
BamHI GGATCC 1 cut(s) 22
BauI CACGAG 1 cut(s) 1317
BbsI GAAGAC 1 cut(s) 97
BbvI GCAGC 6 cut(s) 321, 645, 1095, 1095, 1285, 1397
BccI CCATC 5 cut(s) 530, 812, 860, 920, 1189
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 1 cut(s) 449
BciVI GTATCC 1 cut(s) 603
BcnI CCSGG 1 cut(s) 425
BfaI CTAG 5 cut(s) 734, 1074, 1247, 1500, 1548
BfmI CTRYAG 1 cut(s) 786
BfoI RGCGCY 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 680
BfuI GTATCC 1 cut(s) 603
BisI GCNGC 7 cut(s) 310, 634, 1084, 1087, 1109, 1274, 1386
BlsI GCNGC 7 cut(s) 311, 635, 1085, 1088, 1110, 1275, 1387
Bme1390I CCNGG 2 cut(s) 425, 449
Bme18I GGWCC 2 cut(s) 397, 541
BmgT120I GGNCC 5 cut(s) 397, 421, 541, 775, 830
BmiI GGNNCC 5 cut(s) 24, 423, 429, 542, 1510
BmrFI CCNGG 2 cut(s) 425, 449
BmsI GCATC 4 cut(s) 1089, 1315, 1420, 1534
BmtI GCTAGC 2 cut(s) 1250, 1551
BpiI GAAGAC 1 cut(s) 97
BpmI CTGGAG 2 cut(s) 1527, 1546
Bpu10I CCTNAGC 1 cut(s) 1265
Bpu14I TTCGAA 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 1441
BsaJI CCNNGG 4 cut(s) 246, 423, 447, 778
BsaWI WCCGGW 1 cut(s) 999
BsaXI ACNNNNNCTCC 4 cut(s) 921, 951, 1095, 1125
Bsc4I CCNNNNNNNGG 5 cut(s) 366, 454, 752, 810, 866
Bse118I RCCGGY 2 cut(s) 999, 1388
Bse1I ACTGG 3 cut(s) 1191, 1452, 1563
BseBI CCWGG 1 cut(s) 449
BseDI CCNNGG 4 cut(s) 246, 423, 447, 778
BseGI GGATG 5 cut(s) 463, 931, 1017, 1104, 1330
BseLI CCNNNNNNNGG 5 cut(s) 366, 454, 752, 810, 866
BseNI ACTGG 3 cut(s) 1191, 1452, 1563
BseRI GAGGAG 1 cut(s) 1549
BseXI GCAGC 6 cut(s) 321, 645, 1095, 1095, 1285, 1397
BseYI CCCAGC 2 cut(s) 836, 1551
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 888
BshFI GGCC 4 cut(s) 422, 776, 831, 1138
BshTI ACCGGT 1 cut(s) 999
BsiSI CCGG 4 cut(s) 425, 1000, 1389, 1434
BslFI GGGAC 4 cut(s) 288, 796, 1064, 1568
BslI CCNNNNNNNGG 5 cut(s) 366, 454, 752, 810, 866
BsmFI GGGAC 4 cut(s) 288, 796, 1064, 1568
BsnI GGCC 4 cut(s) 422, 776, 831, 1138
Bsp119I TTCGAA 1 cut(s) 524
Bsp143I GATC 5 cut(s) 22, 377, 1378, 1483, 1527
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 4 cut(s) 888, 1086, 1106, 1538
BspANI GGCC 4 cut(s) 422, 776, 831, 1138
BspFNI CGCG 1 cut(s) 888
BspLI GGNNCC 5 cut(s) 24, 423, 429, 542, 1510
BspMI ACCTGC 1 cut(s) 680
BspOI GCTAGC 2 cut(s) 1250, 1551
BspPI GGATC 4 cut(s) 17, 30, 372, 1386
BspT104I TTCGAA 1 cut(s) 524
BsrFI RCCGGY 2 cut(s) 999, 1388
BsrI ACTGG 3 cut(s) 1191, 1452, 1563
BssAI RCCGGY 2 cut(s) 999, 1388
BssECI CCNNGG 4 cut(s) 246, 423, 447, 778
BssMI GATC 5 cut(s) 22, 377, 1378, 1483, 1527
BssNAI GTATAC 1 cut(s) 1288
BssNI GRCGYC 1 cut(s) 1441
BssSI CACGAG 1 cut(s) 1317
BssT1I CCWWGG 2 cut(s) 246, 778
Bst1107I GTATAC 1 cut(s) 1288
Bst2BI CACGAG 1 cut(s) 1317
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 5 cut(s) 70, 515, 601, 615, 721
Bst6I CTCTTC 1 cut(s) 1072
BstACI GRCGYC 1 cut(s) 1441
BstAPI GCANNNNNTGC 2 cut(s) 1108, 1279
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 4 cut(s) 487, 1248, 1357, 1549
BstDEI CTNAG 1 cut(s) 1265
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 890
BstF5I GGATG 5 cut(s) 463, 931, 1017, 1104, 1330
BstFNI CGCG 1 cut(s) 888
BstH2I RGCGCY 1 cut(s) 746
BstHHI GCGC 1 cut(s) 745
BstKTI GATC 5 cut(s) 25, 380, 1381, 1486, 1530
BstMBI GATC 5 cut(s) 22, 377, 1378, 1483, 1527
BstMWI GCNNNNNNNGC 6 cut(s) 470, 495, 1108, 1270, 1279, 1544
BstNI CCWGG 1 cut(s) 449
BstPI GGTNACC 1 cut(s) 890
BstSCI CCNGG 2 cut(s) 423, 447
BstSFI CTRYAG 1 cut(s) 786
BstUI CGCG 1 cut(s) 888
BstV1I GCAGC 6 cut(s) 321, 645, 1095, 1095, 1285, 1397
BstV2I GAAGAC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BstZ17I GTATAC 1 cut(s) 1288
BsuI GTATCC 1 cut(s) 603
BsuRI GGCC 4 cut(s) 422, 776, 831, 1138
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 549
BtsCI GGATG 5 cut(s) 463, 931, 1017, 1104, 1330
BtsI GCAGTG 1 cut(s) 1277
BtsIMutI CAGTG 3 cut(s) 1184, 1277, 1445
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 4 cut(s) 487, 1248, 1357, 1549
CaiI CAGNNNCTG 1 cut(s) 1279
CfoI GCGC 1 cut(s) 745
Cfr10I RCCGGY 2 cut(s) 999, 1388
Cfr13I GGNCC 5 cut(s) 397, 421, 541, 775, 830
CseI GACGC 2 cut(s) 577, 1430
Csp6I GTAC 2 cut(s) 884, 1303
CspAI ACCGGT 1 cut(s) 999
CviAII CATG 4 cut(s) 247, 1115, 1294, 1520
CviQI GTAC 2 cut(s) 884, 1303
DdeI CTNAG 1 cut(s) 1265
DpnI GATC 5 cut(s) 24, 379, 1380, 1485, 1529
DpnII GATC 5 cut(s) 22, 377, 1378, 1483, 1527
DraI TTTAAA 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 1136
Eam1104I CTCTTC 1 cut(s) 1072
EarI CTCTTC 1 cut(s) 1072
Eco130I CCWWGG 2 cut(s) 246, 778
Eco32I GATATC 1 cut(s) 1017
Eco47I GGWCC 2 cut(s) 397, 541
Eco57I CTGAAG 2 cut(s) 675, 759
Eco91I GGTNACC 1 cut(s) 890
EcoO109I RGGNCCY 2 cut(s) 397, 830
EcoO65I GGTNACC 1 cut(s) 890
EcoRII CCWGG 1 cut(s) 447
EcoRV GATATC 1 cut(s) 1017
EcoT14I CCWWGG 2 cut(s) 246, 778
ErhI CCWWGG 2 cut(s) 246, 778
FaeI CATG 4 cut(s) 250, 1118, 1297, 1523
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 4 cut(s) 288, 796, 1064, 1568
FatI CATG 4 cut(s) 246, 1114, 1293, 1519
FblI GTMKAC 1 cut(s) 1287
Fnu4HI GCNGC 7 cut(s) 310, 634, 1084, 1087, 1109, 1274, 1386
FokI GGATG 5 cut(s) 470, 938, 1024, 1111, 1337
Fsp4HI GCNGC 7 cut(s) 310, 634, 1084, 1087, 1109, 1274, 1386
FspBI CTAG 5 cut(s) 734, 1074, 1247, 1500, 1548
GlaI GCGC 1 cut(s) 744
GluI GCNGC 7 cut(s) 310, 634, 1084, 1087, 1109, 1274, 1386
GsaI CCCAGC 2 cut(s) 840, 1555
GsuI CTGGAG 2 cut(s) 1527, 1546
HaeII RGCGCY 1 cut(s) 746
HaeIII GGCC 4 cut(s) 422, 776, 831, 1138
HapII CCGG 4 cut(s) 425, 1000, 1389, 1434
HgaI GACGC 2 cut(s) 577, 1430
HhaI GCGC 1 cut(s) 745
Hin1I GRCGYC 1 cut(s) 1441
Hin1II CATG 4 cut(s) 250, 1118, 1297, 1523
Hin6I GCGC 1 cut(s) 743
HinP1I GCGC 1 cut(s) 743
HinfI GANTC 7 cut(s) 84, 99, 412, 620, 1043, 1225, 1556
HpaII CCGG 4 cut(s) 425, 1000, 1389, 1434
HphI GGTGA 5 cut(s) 109, 152, 902, 989, 1309
Hpy166II GTNNAC 7 cut(s) 724, 1120, 1167, 1202, 1288, 1305, 1445
Hpy188I TCNGA 6 cut(s) 470, 510, 619, 768, 1042, 1160
Hpy188III TCNNGA 3 cut(s) 367, 797, 1481
Hpy8I GTNNAC 7 cut(s) 724, 1120, 1167, 1202, 1288, 1305, 1445
HpyAV CCTTC 7 cut(s) 130, 160, 391, 1207, 1235, 1243, 1469
HpyCH4III ACNGT 5 cut(s) 70, 515, 601, 615, 721
HpyCH4IV ACGT 5 cut(s) 157, 235, 639, 872, 1037
HpyCH4V TGCA 6 cut(s) 478, 578, 816, 902, 1102, 1148
HpyF10VI GCNNNNNNNGC 6 cut(s) 470, 495, 1108, 1270, 1279, 1544
HpyF3I CTNAG 1 cut(s) 1265
HpySE526I ACGT 5 cut(s) 157, 235, 639, 872, 1037
Hsp92I GRCGYC 1 cut(s) 1441
Hsp92II CATG 4 cut(s) 250, 1118, 1297, 1523
HspAI GCGC 1 cut(s) 743
Kzo9I GATC 5 cut(s) 22, 377, 1378, 1483, 1527
LmnI GCTCC 5 cut(s) 427, 585, 630, 1116, 1508
Lsp1109I GCAGC 6 cut(s) 321, 645, 1095, 1095, 1285, 1397
LweI GCATC 4 cut(s) 1089, 1315, 1420, 1534
MaeI CTAG 5 cut(s) 734, 1074, 1247, 1500, 1548
MaeII ACGT 5 cut(s) 157, 235, 639, 872, 1037
MaeIII GTNAC 5 cut(s) 70, 158, 568, 890, 1423
MalI GATC 5 cut(s) 24, 379, 1380, 1485, 1529
MboI GATC 5 cut(s) 22, 377, 1378, 1483, 1527
MboII GAAGA 7 cut(s) 97, 231, 538, 668, 671, 1089, 1381
MflI RGATCY 1 cut(s) 22
MlsI TGGCCA 1 cut(s) 1138
MluNI TGGCCA 1 cut(s) 1138
MlyI GAGTC 4 cut(s) 421, 629, 1234, 1550
MmeI TCCRAC 2 cut(s) 89, 178
Mox20I TGGCCA 1 cut(s) 1138
MroXI GAANNNNTTC 1 cut(s) 663
MscI TGGCCA 1 cut(s) 1138
MseI TTAA 4 cut(s) 5, 92, 759, 917
Msp20I TGGCCA 1 cut(s) 1138
MspA1I CMGCKG 2 cut(s) 1086, 1108
MspI CCGG 4 cut(s) 425, 1000, 1389, 1434
MspR9I CCNGG 2 cut(s) 425, 449
MvaI CCWGG 1 cut(s) 449
MvnI CGCG 1 cut(s) 888
MwoI GCNNNNNNNGC 6 cut(s) 470, 495, 1108, 1270, 1279, 1544
NciI CCSGG 1 cut(s) 425
NcoI CCATGG 1 cut(s) 246
NdeII GATC 5 cut(s) 22, 377, 1378, 1483, 1527
NheI GCTAGC 2 cut(s) 1246, 1547
NlaIII CATG 4 cut(s) 250, 1118, 1297, 1523
NlaIV GGNNCC 5 cut(s) 24, 423, 429, 542, 1510
NmeAIII GCCGAG 1 cut(s) 1354
NmuCI GTSAC 3 cut(s) 158, 568, 890
NspV TTCGAA 1 cut(s) 524
PaqCI CACCTGC 1 cut(s) 680
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 3 cut(s) 84, 99, 1043
PflMI CCANNNNNTGG 1 cut(s) 454
PinAI ACCGGT 1 cut(s) 999
PkrI GCNGC 7 cut(s) 311, 635, 1085, 1088, 1110, 1275, 1387
PleI GAGTC 4 cut(s) 420, 628, 1233, 1550
PpsI GAGTC 4 cut(s) 420, 628, 1233, 1550
PpuMI RGGWCCY 1 cut(s) 397
Psp1406I AACGTT 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 447
PspEI GGTNACC 1 cut(s) 890
PspFI CCCAGC 2 cut(s) 836, 1551
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 5 cut(s) 24, 423, 429, 542, 1510
PspPI GGNCC 5 cut(s) 397, 421, 541, 775, 830
PspPPI RGGWCCY 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 1279
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 2 cut(s) 885, 1304
RsaNI GTAC 2 cut(s) 884, 1303
SaqAI TTAA 4 cut(s) 5, 92, 759, 917
SatI GCNGC 7 cut(s) 310, 634, 1084, 1087, 1109, 1274, 1386
Sau3AI GATC 5 cut(s) 22, 377, 1378, 1483, 1527
Sau96I GGNCC 5 cut(s) 397, 421, 541, 775, 830
SchI GAGTC 4 cut(s) 421, 629, 1234, 1550
ScrFI CCNGG 2 cut(s) 425, 449
SfaNI GCATC 4 cut(s) 1089, 1315, 1420, 1534
SfcI CTRYAG 1 cut(s) 786
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 2 cut(s) 397, 541
SsiI CCGC 4 cut(s) 888, 1086, 1106, 1538
SspMI CTAG 5 cut(s) 734, 1074, 1247, 1500, 1548
StyD4I CCNGG 2 cut(s) 423, 447
StyI CCWWGG 2 cut(s) 246, 778
TaaI ACNGT 5 cut(s) 70, 515, 601, 615, 721
TaiI ACGT 5 cut(s) 160, 238, 642, 875, 1040
TaqI TCGA 5 cut(s) 410, 524, 1223, 1486, 1533
TatI WGTACW 1 cut(s) 1302
TauI GCSGC 1 cut(s) 1089
TfiI GAWTC 3 cut(s) 84, 99, 1043
Tru1I TTAA 4 cut(s) 5, 92, 759, 917
Tru9I TTAA 4 cut(s) 5, 92, 759, 917
TscAI CASTG 3 cut(s) 1191, 1284, 1452
TseFI GTSAC 3 cut(s) 158, 568, 890
TseI GCWGC 6 cut(s) 309, 633, 1083, 1108, 1273, 1385
Tsp45I GTSAC 3 cut(s) 158, 568, 890
TspDTI ATGAA 3 cut(s) 117, 292, 1355
TspRI CASTG 3 cut(s) 1191, 1284, 1452
Van91I CCANNNNNTGG 1 cut(s) 454
VpaK11BI GGWCC 2 cut(s) 397, 541
XapI RAATTY 5 cut(s) 49, 55, 670, 1126, 1219
XmiI GTMKAC 1 cut(s) 1287
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 5 cut(s) 734, 1074, 1247, 1500, 1548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.