FvH4_3g20770

PAP-specific phosphatase HAL2-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
13821573 .. 13826467
4895 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20770.t2

Sequence Viewer

Length: 1146 bp
ATGGAGGACGACAAGTACGCTAAGGAGTTGGACGTGGCGGTTAGAGCGGTGCACATGGCTTGTGCTCTGTGTCAGAGAGTTCAAGAGGGTTTGGTTTCAGCTAGCACCGACCAGGTTAAGTCCAAGGACGACGATTCCCCTGTAACCATTGCAGATTGGAGTGTCCAAGCAACTGTTAGCTGGATACTATCTGAATTCTTTGGGAATCAAAATGTATCCATTATTGCTGAAGAAGATGTACAGGCTCTCTCTGAGGCTGACTCAGTAGGTTTGCTGCAAGCTGTTGTGAATACTGTGAATGAATGCTTAGCTGGAGCACCTAAGTATGGTCTTAAAAGTCCATCAGAAGCCCTTACGACATCTCAAATTCTTGAGGCTATCAGCCGATGCAACTCGGTAGGAGGCCCCAAAGGAAGACATTGGGTACTTGATCCTGTTGATGGCACATTAGGGTTTGTGCGTGGGGATCAATATGCTGTGGCTCTAGCCTTGATTGAGGATGGAAAAGTTGTTATTGGGGTACTAGGGTGCCCTAATTACCCAATGAAAAAAGAACTGCTCAATTATCATTATCAGTACCATGAAGCCATGTCAAAGTCTTCTCCACCTTCTCCTGATATATGGGAAAGAGGTTGTGTGATGTATGCGAGAAAAGACAGTGGGCACGCGTGGATGCAGCCACACATCCATGGAGATAAGAAGTTTGAATGGCCAAATTCTGCTAAACTTATTCGGGTTTCTTCCATCGATGACCCAGCACTGGCTACTAGTTGTGAACCTGTGGAGAGAGCAAATTCAAACCACTCCTTCACAGAAGGGCTTGCTCACAGCGTAGGGCTAAGAAAGAAGCCCATGCGTGTCTATAGCATGGTGAAATATGCAGCCATAGCTCGGGGAGATGCTGAGCTGTTTATGAAGTTTGCAAGGACAGGGTACAAGGAGAAGATATGGGATCATGCTGCAGGTGTTGTCATTGTAGAAGAGGCTGGGGGTATGGTAACTGATGCTGGAGGAAGGCCCCTGGACTTTTCAAAAGGACCGTACTTAGAAGGCCTTGATAGAGGAATTATTGTTTGTTCTGGGGCCGCACTGCATGAGAAAATAGTTGATGCCGTTTATGCCAGCTGGGACTCTTCTAGTTTATGA

Protein Analysis

382

Amino Acids

41.44

Weight (kDa)

5.42

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 45 - 373 4.2e-43 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 953
Acc36I ACCTGC 1 cut(s) 953
AccB1I GGYRCC 1 cut(s) 528
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 1 cut(s) 668
AciI CCGC 3 cut(s) 38, 47, 1086
AclWI GGATC 3 cut(s) 425, 474, 960
AcoI YGGCCR 1 cut(s) 710
AcsI RAATTY 4 cut(s) 194, 366, 715, 793
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 7 cut(s) 17, 240, 426, 522, 578, 935, 1043
AfiI CCNNNNNNNGG 4 cut(s) 326, 440, 760, 891
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 4 cut(s) 83, 707, 798, 1032
AhlI ACTAGT 1 cut(s) 767
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 2 cut(s) 111, 1020
AluBI AGCT 7 cut(s) 101, 180, 281, 311, 890, 907, 1125
AluI AGCT 7 cut(s) 101, 180, 281, 311, 890, 907, 1125
Alw21I GWGCWC 3 cut(s) 54, 67, 319
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 3 cut(s) 425, 474, 960
Ama87I CYCGRG 1 cut(s) 891
AoxI GGCC 5 cut(s) 403, 710, 1016, 1051, 1083
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 4 cut(s) 274, 676, 881, 959
ApoI RAATTY 4 cut(s) 194, 366, 715, 793
AspS9I GGNCC 4 cut(s) 404, 1017, 1037, 1083
AsuHPI GGTGA 1 cut(s) 883
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 891
AvaII GGWCC 1 cut(s) 1037
BaeGI GKGCMC 3 cut(s) 54, 533, 666
BaeI ACNNNNGTAYC 2 cut(s) 512, 545
BalI TGGCCA 1 cut(s) 712
BanI GGYRCC 1 cut(s) 528
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
BbsI GAAGAC 2 cut(s) 421, 591
Bbv12I GWGCWC 3 cut(s) 54, 67, 319
BbvI GCAGC 4 cut(s) 261, 688, 893, 946
BccI CCATC 4 cut(s) 349, 434, 494, 752
BceAI ACGGC 1 cut(s) 1097
BciT130I CCWGG 2 cut(s) 113, 1022
BciVI GTATCC 2 cut(s) 177, 226
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 5 cut(s) 102, 485, 524, 768, 1137
BfmI CTRYAG 2 cut(s) 862, 960
BfuAI ACCTGC 1 cut(s) 953
BfuI GTATCC 2 cut(s) 177, 226
BisI GCNGC 5 cut(s) 275, 677, 882, 960, 1086
BlpI GCTNAGC 2 cut(s) 307, 903
BlsI GCNGC 5 cut(s) 276, 678, 883, 961, 1087
Bme1390I CCNGG 2 cut(s) 113, 1022
Bme18I GGWCC 1 cut(s) 1037
BmeT110I CYCGRG 1 cut(s) 891
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 4 cut(s) 404, 1017, 1037, 1083
BmiI GGNNCC 4 cut(s) 406, 530, 1019, 1084
BmrFI CCNGG 2 cut(s) 113, 1022
BmsI GCATC 5 cut(s) 377, 663, 889, 994, 1099
BmtI GCTAGC 1 cut(s) 105
BpiI GAAGAC 2 cut(s) 421, 591
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 2 cut(s) 333, 1029
Bpu10I CCTNAGC 1 cut(s) 21
Bpu1102I GCTNAGC 2 cut(s) 307, 903
BpuEI CTTGAG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 747
BsaJI CCNNGG 3 cut(s) 123, 688, 1020
Bsc4I CCNNNNNNNGG 4 cut(s) 326, 440, 760, 891
Bse1I ACTGG 1 cut(s) 765
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 2 cut(s) 113, 1022
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 3 cut(s) 123, 688, 1020
BseGI GGATG 3 cut(s) 505, 678, 684
BseLI CCNNNNNNNGG 4 cut(s) 326, 440, 760, 891
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 3 cut(s) 243, 276, 894
BseNI ACTGG 1 cut(s) 765
BseSI GKGCMC 3 cut(s) 54, 533, 666
BseXI GCAGC 4 cut(s) 261, 688, 893, 946
BseYI CCCAGC 3 cut(s) 754, 986, 1125
Bsh1236I CGCG 1 cut(s) 668
BshFI GGCC 5 cut(s) 405, 712, 1018, 1053, 1085
BshNI GGYRCC 1 cut(s) 528
BshVI ATCGAT 1 cut(s) 747
BsiHKAI GWGCWC 3 cut(s) 54, 67, 319
BsiHKCI CYCGRG 1 cut(s) 891
BslFI GGGAC 1 cut(s) 1142
BslI CCNNNNNNNGG 4 cut(s) 326, 440, 760, 891
BsmFI GGGAC 1 cut(s) 1142
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 5 cut(s) 405, 712, 1018, 1053, 1085
BsoBI CYCGRG 1 cut(s) 891
Bsp1286I GDGCHC 5 cut(s) 54, 67, 319, 533, 666
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 3 cut(s) 430, 466, 952
Bsp1720I GCTNAGC 2 cut(s) 307, 903
Bsp19I CCATGG 1 cut(s) 688
BspACI CCGC 3 cut(s) 38, 47, 1086
BspANI GGCC 5 cut(s) 405, 712, 1018, 1053, 1085
BspCNI CTCAG 3 cut(s) 244, 275, 895
BspDI ATCGAT 1 cut(s) 747
BspFNI CGCG 1 cut(s) 668
BspLI GGNNCC 4 cut(s) 406, 530, 1019, 1084
BspMAI CTGCAG 1 cut(s) 964
BspMI ACCTGC 1 cut(s) 953
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 3 cut(s) 425, 474, 960
BspT107I GGYRCC 1 cut(s) 528
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 1 cut(s) 765
BssECI CCNNGG 3 cut(s) 123, 688, 1020
BssMI GATC 3 cut(s) 430, 466, 952
BssT1I CCWWGG 2 cut(s) 123, 688
Bst2UI CCWGG 2 cut(s) 113, 1022
Bst4CI ACNGT 4 cut(s) 175, 295, 659, 1041
Bst6I CTCTTC 2 cut(s) 975, 1138
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 5 cut(s) 103, 279, 666, 822, 1123
BstDEI CTNAG 8 cut(s) 21, 252, 262, 307, 321, 839, 903, 1045
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 3 cut(s) 505, 678, 684
BstFNI CGCG 1 cut(s) 668
BstKTI GATC 3 cut(s) 433, 469, 955
BstMBI GATC 3 cut(s) 430, 466, 952
BstMWI GCNNNNNNNGC 3 cut(s) 44, 887, 1118
BstNI CCWGG 2 cut(s) 113, 1022
BstSCI CCNGG 2 cut(s) 111, 1020
BstSFI CTRYAG 2 cut(s) 862, 960
BstSLI GKGCMC 3 cut(s) 54, 533, 666
BstUI CGCG 1 cut(s) 668
BstV1I GCAGC 4 cut(s) 261, 688, 893, 946
BstV2I GAAGAC 2 cut(s) 421, 591
Bsu15I ATCGAT 1 cut(s) 747
BsuI GTATCC 2 cut(s) 177, 226
BsuRI GGCC 5 cut(s) 405, 712, 1018, 1053, 1085
BsuTUI ATCGAT 1 cut(s) 747
BtgI CCRYGG 1 cut(s) 688
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 505, 678, 684
BtsI GCAGTG 1 cut(s) 1088
BtsIMutI CAGTG 3 cut(s) 664, 758, 1088
BveI ACCTGC 1 cut(s) 953
Cac8I GCNNGC 5 cut(s) 103, 279, 666, 822, 1123
Cfr13I GGNCC 4 cut(s) 404, 1017, 1037, 1083
ClaI ATCGAT 1 cut(s) 747
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 7 cut(s) 16, 239, 425, 521, 577, 934, 1042
CviAII CATG 8 cut(s) 55, 581, 589, 689, 853, 868, 956, 1094
CviQI GTAC 7 cut(s) 16, 239, 425, 521, 577, 934, 1042
DdeI CTNAG 8 cut(s) 21, 252, 262, 307, 321, 839, 903, 1045
DpnI GATC 3 cut(s) 432, 468, 954
DpnII GATC 3 cut(s) 430, 466, 952
EaeI YGGCCR 1 cut(s) 710
Eam1104I CTCTTC 2 cut(s) 975, 1138
EarI CTCTTC 2 cut(s) 975, 1138
Eco130I CCWWGG 2 cut(s) 123, 688
Eco147I AGGCCT 1 cut(s) 1053
Eco47I GGWCC 1 cut(s) 1037
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 891
EcoO109I RGGNCCY 2 cut(s) 404, 1017
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 111, 1020
EcoT14I CCWWGG 2 cut(s) 123, 688
ErhI CCWWGG 2 cut(s) 123, 688
FaeI CATG 8 cut(s) 58, 584, 592, 692, 856, 871, 959, 1097
FaqI GGGAC 1 cut(s) 1142
FatI CATG 8 cut(s) 54, 580, 588, 688, 852, 867, 955, 1093
Fnu4HI GCNGC 5 cut(s) 275, 677, 882, 960, 1086
FokI GGATG 3 cut(s) 512, 671, 685
Fsp4HI GCNGC 5 cut(s) 275, 677, 882, 960, 1086
FspBI CTAG 5 cut(s) 102, 485, 524, 768, 1137
GluI GCNGC 5 cut(s) 275, 677, 882, 960, 1086
GsaI CCCAGC 3 cut(s) 758, 990, 1129
GsuI CTGGAG 2 cut(s) 333, 1029
HaeIII GGCC 5 cut(s) 405, 712, 1018, 1053, 1085
Hin1II CATG 8 cut(s) 58, 584, 592, 692, 856, 871, 959, 1097
HinfI GANTC 4 cut(s) 134, 205, 260, 1130
HphI GGTGA 1 cut(s) 883
Hpy166II GTNNAC 2 cut(s) 52, 776
Hpy188I TCNGA 4 cut(s) 75, 193, 253, 346
Hpy188III TCNNGA 3 cut(s) 83, 371, 614
Hpy8I GTNNAC 2 cut(s) 52, 776
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 5 cut(s) 618, 809, 817, 1008, 1043
HpyCH4III ACNGT 4 cut(s) 175, 295, 659, 1041
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 9 cut(s) 52, 152, 277, 390, 676, 881, 923, 962, 1093
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 887, 1118
HpyF3I CTNAG 8 cut(s) 21, 252, 262, 307, 321, 839, 903, 1045
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 8 cut(s) 58, 584, 592, 692, 856, 871, 959, 1097
Kzo9I GATC 3 cut(s) 430, 466, 952
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 4 cut(s) 261, 688, 893, 946
LweI GCATC 5 cut(s) 377, 663, 889, 994, 1099
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 5 cut(s) 102, 485, 524, 768, 1137
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 142, 997
MalI GATC 3 cut(s) 432, 468, 954
MbiI CCGCTC 1 cut(s) 47
MboI GATC 3 cut(s) 430, 466, 952
MboII GAAGA 8 cut(s) 242, 245, 426, 591, 732, 955, 992, 1125
MhlI GDGCHC 5 cut(s) 54, 67, 319, 533, 666
MlsI TGGCCA 1 cut(s) 712
MluCI AATT 7 cut(s) 194, 366, 535, 562, 715, 793, 1065
MluI ACGCGT 1 cut(s) 666
MluNI TGGCCA 1 cut(s) 712
MlyI GAGTC 2 cut(s) 254, 1124
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 9 cut(s) 79, 247, 367, 395, 490, 623, 976, 1004, 1055
Mox20I TGGCCA 1 cut(s) 712
MscI TGGCCA 1 cut(s) 712
MseI TTAA 2 cut(s) 117, 333
MslI CAYNNNNRTG 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 712
MspA1I CMGCKG 1 cut(s) 1125
MspR9I CCNGG 2 cut(s) 113, 1022
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 2 cut(s) 113, 1022
MvnI CGCG 1 cut(s) 668
MwoI GCNNNNNNNGC 3 cut(s) 44, 887, 1118
NcoI CCATGG 1 cut(s) 688
NdeII GATC 3 cut(s) 430, 466, 952
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 8 cut(s) 58, 584, 592, 692, 856, 871, 959, 1097
NlaIV GGNNCC 4 cut(s) 406, 530, 1019, 1084
PaqCI CACCTGC 1 cut(s) 953
PceI AGGCCT 1 cut(s) 1053
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 2 cut(s) 134, 205
PkrI GCNGC 5 cut(s) 276, 678, 883, 961, 1087
PleI GAGTC 2 cut(s) 254, 1124
PpsI GAGTC 2 cut(s) 254, 1124
Psp6I CCWGG 2 cut(s) 111, 1020
PspFI CCCAGC 3 cut(s) 754, 986, 1125
PspGI CCWGG 2 cut(s) 111, 1020
PspN4I GGNNCC 4 cut(s) 406, 530, 1019, 1084
PspPI GGNCC 4 cut(s) 404, 1017, 1037, 1083
PstI CTGCAG 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 1125
RsaI GTAC 7 cut(s) 17, 240, 426, 522, 578, 935, 1043
RsaNI GTAC 7 cut(s) 16, 239, 425, 521, 577, 934, 1042
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 2 cut(s) 117, 333
SatI GCNGC 5 cut(s) 275, 677, 882, 960, 1086
Sau3AI GATC 3 cut(s) 430, 466, 952
Sau96I GGNCC 4 cut(s) 404, 1017, 1037, 1083
SchI GAGTC 2 cut(s) 254, 1124
ScrFI CCNGG 2 cut(s) 113, 1022
SduI GDGCHC 5 cut(s) 54, 67, 319, 533, 666
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 5 cut(s) 377, 663, 889, 994, 1099
SfcI CTRYAG 2 cut(s) 862, 960
SinI GGWCC 1 cut(s) 1037
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 7 cut(s) 194, 366, 535, 562, 715, 793, 1065
SseBI AGGCCT 1 cut(s) 1053
SsiI CCGC 3 cut(s) 38, 47, 1086
SspMI CTAG 5 cut(s) 102, 485, 524, 768, 1137
StuI AGGCCT 1 cut(s) 1053
StyD4I CCNGG 2 cut(s) 111, 1020
StyI CCWWGG 2 cut(s) 123, 688
TaaI ACNGT 4 cut(s) 175, 295, 659, 1041
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 747
TasI AATT 7 cut(s) 194, 366, 535, 562, 715, 793, 1065
TatI WGTACW 1 cut(s) 238
TauI GCSGC 1 cut(s) 1088
TfiI GAWTC 2 cut(s) 134, 205
Tru1I TTAA 2 cut(s) 117, 333
Tru9I TTAA 2 cut(s) 117, 333
TscAI CASTG 3 cut(s) 664, 765, 1095
TseI GCWGC 4 cut(s) 274, 676, 881, 959
TspDTI ATGAA 4 cut(s) 315, 560, 597, 929
TspRI CASTG 3 cut(s) 664, 765, 1095
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 1037
XapI RAATTY 4 cut(s) 194, 366, 715, 793
XspI CTAG 5 cut(s) 102, 485, 524, 768, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.