MD10G1301100.v1.1

PAP-specific phosphatase HAL2-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
38826411 .. 38829979
3569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1301100.v1.1.491

Sequence Viewer

Length: 1326 bp
ATGGCTATAAAATTCTCGCACAATTTGGGTCTTGAAAAATGGAATGACAACAAGTTGACACGCAGCAACAAAATCCACCTCAACTTTTCTGGGAAATTTGGCTGCTCCTTATCCAAGTTCAGGAAAACCCAATCCTTCCCAGTAATGGAGGGCCTGAAAAGTTCGAGCCTTTTGGCCCCCGAGCCAGTGATTAATTACTCCCAGGAATTGGATGTGGCTGTTAGAGCTGTGCAATTGGCTTGTTCTCTCTGCCAGAGAGTTCAGAACAGTTTGATTTCGAAGAACAGCAATGGGGTCCAATCCAAAGATGATAACTCTCCTGTCACTGTGGCAGATTGGAGTGTCCAAGCAACTGTGAGCTGGATACTGTCCGAGTCTTTTGGGAGCAGCAACGTGTCCATTATTGCTGAAGAAGATATTCAAAATTTGTCCATGGCAAAGGCAGGTGGAGTGCTAAAAGATGTAGTGAAAACTGTGAACGAATGTCTAGCTGAAGCACCTCGTTTTGGACTTAAAAGTCCGAAAATGGCCCTTGGGACTACAGAGGTTCTTGAAGCCATCAGTCGGTGCAACTCACTTGGAGGCCCGGCTGGGAGATTTTGGACACTTGACCCCGTTGATGGCACATTGGGTTTTGTCCGCGGTGATCAATATGCAATAGCTCTGGCTTTAATAGAGGATGGAGAAGTTGTGCTTGGAGTTCTTGGCTGTCCTAATTACCCAATGAGAAAGGAATGGCTCAATTATCATCACCGGTATCATAGAATTATATCTAAATTGACACCACCAACGTCAGAATCTTGGGACAAAGGCTGTGTGATATATGCTAGAAGAGGCAGCGGCGAGGCTTGGATGCAACCGCTGCTCCATGTAAATAAGAACTTAGTGTGGCCAAACTCTGCAAAACCTGTCCGAGTGTCGTCCATAGATAATCCAGCACTGGCAACATTTTGTGAACCTGTTGAGAAGGAAAATTCAAGTCATTCCTTCACTGCAGGGCTAGCTCACAGTGTCGGGCTTAGGAAGCAGCCACTGCGAGTATACAGCATGGTGAAGTACGCAGCTATAGCTCGTGGAGATGCCGAGATTTTTATGAAGTTTGCAAGGGCTGGCTACAGGGAGAAGATTTGGGATCATGCAGCCGGCGTTGTTATCATACAAGAGGCTGGTGGGGTGGTTACAGATGCCGGAGGGCGTCCACTGGACTTTTCGAAGGGCATATACTTGGAAGGCCTTGATCGAGGTGTAGTAGCTACTGCTGGAGCCAATCTACATGACAAGATCATCAGGGCCGTTGATGCTAGCTGGGACTCCTCCAGTCTATAA

Protein Analysis

442

Amino Acids

48.08

Weight (kDa)

8.65

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 103 - 434 8.9e-43 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
AasI GACNNNNNNGTC 1 cut(s) 516
Acc36I ACCTGC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 208
AccI GTMKAC 1 cut(s) 1041
AccII CGCG 1 cut(s) 642
AciI CCGC 4 cut(s) 640, 642, 840, 860
AclWI GGATC 1 cut(s) 1140
AcoI YGGCCR 1 cut(s) 890
AcsI RAATTY 4 cut(s) 11, 95, 424, 973
AcuI CTGAAG 2 cut(s) 429, 513
AcyI GRCGYC 1 cut(s) 1195
AfaI GTAC 1 cut(s) 1058
AfiI CCNNNNNNNGG 6 cut(s) 120, 145, 208, 506, 564, 620
AflIII ACRYGT 1 cut(s) 393
AgeI ACCGGT 1 cut(s) 753
AgsI TTSAA 4 cut(s) 35, 422, 554, 978
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 9 cut(s) 227, 360, 491, 662, 1004, 1064, 1070, 1253, 1305
AluI AGCT 9 cut(s) 227, 360, 491, 662, 1004, 1064, 1070, 1253, 1305
AlwI GGATC 1 cut(s) 1140
AlwNI CAGNNNCTG 1 cut(s) 1033
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 7 cut(s) 151, 174, 528, 583, 890, 1231, 1290
ApeKI GCWGC 8 cut(s) 63, 102, 387, 837, 862, 1027, 1061, 1139
ApoI RAATTY 4 cut(s) 11, 95, 424, 973
AseI ATTAAT 1 cut(s) 192
AsiGI ACCGGT 1 cut(s) 753
Asp700I GAANNNNTTC 1 cut(s) 417
AspS9I GGNCC 6 cut(s) 151, 175, 295, 529, 584, 1290
AsuC2I CCSGG 1 cut(s) 587
AsuHPI GGTGA 3 cut(s) 656, 743, 1063
AsuII TTCGAA 2 cut(s) 278, 1211
AsuNHI GCTAGC 2 cut(s) 1000, 1301
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 892
BarI GAAGNNNNNNTAC 2 cut(s) 1205, 1237
BauI CACGAG 1 cut(s) 1071
BbvI GCAGC 8 cut(s) 75, 89, 399, 849, 849, 1039, 1073, 1151
BccI CCATC 3 cut(s) 566, 614, 674
BceAI ACGGC 1 cut(s) 1277
BciT130I CCWGG 1 cut(s) 203
BciVI GTATCC 1 cut(s) 357
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 1 cut(s) 587
BfaI CTAG 4 cut(s) 488, 828, 1001, 1302
BfmI CTRYAG 4 cut(s) 540, 993, 1065, 1114
BfuAI ACCTGC 1 cut(s) 434
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 9 cut(s) 64, 103, 388, 838, 841, 863, 1028, 1062, 1140
BlsI GCNGC 9 cut(s) 65, 104, 389, 839, 842, 864, 1029, 1063, 1141
Bme1390I CCNGG 2 cut(s) 203, 587
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 6 cut(s) 151, 175, 295, 529, 584, 1290
BmiI GGNNCC 3 cut(s) 177, 296, 1264
BmrFI CCNGG 2 cut(s) 203, 587
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 4 cut(s) 843, 1069, 1174, 1288
BmtI GCTAGC 2 cut(s) 1004, 1305
BmuI ACTGGG 1 cut(s) 134
BpmI CTGGAG 2 cut(s) 1281, 1300
Bpu10I CCTNAGC 1 cut(s) 1019
Bpu14I TTCGAA 2 cut(s) 278, 1211
BpuMI CCSGG 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 1195
BsaJI CCNNGG 4 cut(s) 201, 432, 532, 640
BsaWI WCCGGW 1 cut(s) 753
BsaXI ACNNNNNCTCC 4 cut(s) 675, 705, 849, 879
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 145, 208, 506, 564, 620
Bse118I RCCGGY 2 cut(s) 753, 1142
Bse1I ACTGG 5 cut(s) 140, 185, 945, 1206, 1317
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 4 cut(s) 201, 432, 532, 640
BseGI GGATG 3 cut(s) 217, 685, 858
BseLI CCNNNNNNNGG 6 cut(s) 120, 145, 208, 506, 564, 620
BseMI GCAATG 1 cut(s) 295
BseNI ACTGG 5 cut(s) 140, 185, 945, 1206, 1317
BseRI GAGGAG 1 cut(s) 1303
BseXI GCAGC 8 cut(s) 75, 89, 399, 849, 849, 1039, 1073, 1151
BseYI CCCAGC 2 cut(s) 590, 1305
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 7 cut(s) 153, 176, 530, 585, 892, 1233, 1292
BshTI ACCGGT 1 cut(s) 753
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 4 cut(s) 587, 754, 1143, 1188
BslFI GGGAC 3 cut(s) 550, 818, 1322
BslI CCNNNNNNNGG 6 cut(s) 120, 145, 208, 506, 564, 620
BsmFI GGGAC 3 cut(s) 550, 818, 1322
BsnI GGCC 7 cut(s) 153, 176, 530, 585, 892, 1233, 1292
BsoBI CYCGRG 1 cut(s) 179
Bsp119I TTCGAA 2 cut(s) 278, 1211
Bsp143I GATC 4 cut(s) 646, 1132, 1237, 1281
Bsp19I CCATGG 1 cut(s) 432
BspACI CCGC 4 cut(s) 640, 642, 840, 860
BspANI GGCC 7 cut(s) 153, 176, 530, 585, 892, 1233, 1292
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 3 cut(s) 177, 296, 1264
BspMAI CTGCAG 1 cut(s) 997
BspMI ACCTGC 1 cut(s) 434
BspOI GCTAGC 2 cut(s) 1004, 1305
BspPI GGATC 1 cut(s) 1140
BspT104I TTCGAA 2 cut(s) 278, 1211
BsrDI GCAATG 1 cut(s) 295
BsrFI RCCGGY 2 cut(s) 753, 1142
BsrI ACTGG 5 cut(s) 140, 185, 945, 1206, 1317
BssAI RCCGGY 2 cut(s) 753, 1142
BssECI CCNNGG 4 cut(s) 201, 432, 532, 640
BssMI GATC 4 cut(s) 646, 1132, 1237, 1281
BssNAI GTATAC 1 cut(s) 1042
BssNI GRCGYC 1 cut(s) 1195
BssSI CACGAG 1 cut(s) 1071
BssT1I CCWWGG 2 cut(s) 432, 532
Bst1107I GTATAC 1 cut(s) 1042
Bst2BI CACGAG 1 cut(s) 1071
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 6 cut(s) 269, 328, 355, 369, 475, 1010
Bst6I CTCTTC 1 cut(s) 826
BstACI GRCGYC 1 cut(s) 1195
BstAPI GCANNNNNTGC 2 cut(s) 862, 1033
BstBI TTCGAA 2 cut(s) 278, 1211
BstC8I GCNNGC 4 cut(s) 1002, 1111, 1144, 1303
BstDEI CTNAG 2 cut(s) 883, 1019
BstDSI CCRYGG 2 cut(s) 432, 640
BstF5I GGATG 3 cut(s) 217, 685, 858
BstFNI CGCG 1 cut(s) 642
BstKTI GATC 4 cut(s) 649, 1135, 1240, 1284
BstMBI GATC 4 cut(s) 646, 1132, 1237, 1281
BstMWI GCNNNNNNNGC 7 cut(s) 224, 862, 1001, 1024, 1033, 1067, 1298
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 201, 585
BstSFI CTRYAG 4 cut(s) 540, 993, 1065, 1114
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 8 cut(s) 75, 89, 399, 849, 849, 1039, 1073, 1151
BstZ17I GTATAC 1 cut(s) 1042
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 7 cut(s) 153, 176, 530, 585, 892, 1233, 1292
BtgI CCRYGG 2 cut(s) 432, 640
BtsCI GGATG 3 cut(s) 217, 685, 858
BtsI GCAGTG 2 cut(s) 990, 1031
BtsIMutI CAGTG 7 cut(s) 192, 324, 938, 990, 1015, 1031, 1199
BveI ACCTGC 1 cut(s) 434
Cac8I GCNNGC 4 cut(s) 1002, 1111, 1144, 1303
CaiI CAGNNNCTG 1 cut(s) 1033
Cfr10I RCCGGY 2 cut(s) 753, 1142
Cfr13I GGNCC 6 cut(s) 151, 175, 295, 529, 584, 1290
Cfr42I CCGCGG 1 cut(s) 643
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 1 cut(s) 1057
CspAI ACCGGT 1 cut(s) 753
CviAII CATG 5 cut(s) 433, 869, 1048, 1136, 1274
CviQI GTAC 1 cut(s) 1057
DdeI CTNAG 2 cut(s) 883, 1019
DpnI GATC 4 cut(s) 648, 1134, 1239, 1283
DpnII GATC 4 cut(s) 646, 1132, 1237, 1281
DrdI GACNNNNNNGTC 1 cut(s) 516
DseDI GACNNNNNNGTC 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 890
Eam1104I CTCTTC 1 cut(s) 826
EarI CTCTTC 1 cut(s) 826
Eco130I CCWWGG 2 cut(s) 432, 532
Eco147I AGGCCT 1 cut(s) 1233
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 429, 513
Eco88I CYCGRG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 2 cut(s) 432, 532
ErhI CCWWGG 2 cut(s) 432, 532
FaeI CATG 5 cut(s) 436, 872, 1051, 1139, 1277
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FaqI GGGAC 3 cut(s) 550, 818, 1322
FatI CATG 5 cut(s) 432, 868, 1047, 1135, 1273
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 1041
Fnu4HI GCNGC 9 cut(s) 64, 103, 388, 838, 841, 863, 1028, 1062, 1140
FokI GGATG 3 cut(s) 224, 692, 865
Fsp4HI GCNGC 9 cut(s) 64, 103, 388, 838, 841, 863, 1028, 1062, 1140
FspBI CTAG 4 cut(s) 488, 828, 1001, 1302
GluI GCNGC 9 cut(s) 64, 103, 388, 838, 841, 863, 1028, 1062, 1140
GsaI CCCAGC 2 cut(s) 594, 1309
GsuI CTGGAG 2 cut(s) 1281, 1300
HaeIII GGCC 7 cut(s) 153, 176, 530, 585, 892, 1233, 1292
HapII CCGG 4 cut(s) 587, 754, 1143, 1188
HgaI GACGC 1 cut(s) 1184
Hin1I GRCGYC 1 cut(s) 1195
Hin1II CATG 5 cut(s) 436, 872, 1051, 1139, 1277
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 3 cut(s) 374, 797, 1310
HpaII CCGG 4 cut(s) 587, 754, 1143, 1188
HphI GGTGA 3 cut(s) 656, 743, 1063
Hpy166II GTNNAC 5 cut(s) 57, 478, 956, 1042, 1199
Hpy188I TCNGA 5 cut(s) 264, 373, 522, 796, 914
Hpy188III TCNNGA 3 cut(s) 32, 121, 551
Hpy8I GTNNAC 5 cut(s) 57, 478, 956, 1042, 1199
HpyAV CCTTC 5 cut(s) 145, 961, 997, 1207, 1223
HpyCH4III ACNGT 6 cut(s) 269, 328, 355, 369, 475, 1010
HpyCH4IV ACGT 2 cut(s) 393, 791
HpyCH4V TGCA 8 cut(s) 232, 570, 656, 856, 902, 995, 1103, 1139
HpyF10VI GCNNNNNNNGC 7 cut(s) 224, 862, 1001, 1024, 1033, 1067, 1298
HpyF3I CTNAG 2 cut(s) 883, 1019
HpySE526I ACGT 2 cut(s) 393, 791
Hsp92I GRCGYC 1 cut(s) 1195
Hsp92II CATG 5 cut(s) 436, 872, 1051, 1139, 1277
KroI GCCGGC 1 cut(s) 1142
KroNI GCCGGC 1 cut(s) 1144
Ksp22I TGATCA 1 cut(s) 646
KspI CCGCGG 1 cut(s) 643
Kzo9I GATC 4 cut(s) 646, 1132, 1237, 1281
LmnI GCTCC 4 cut(s) 110, 384, 870, 1262
Lsp1109I GCAGC 8 cut(s) 75, 89, 399, 849, 849, 1039, 1073, 1151
LweI GCATC 4 cut(s) 843, 1069, 1174, 1288
MaeI CTAG 4 cut(s) 488, 828, 1001, 1302
MaeII ACGT 2 cut(s) 393, 791
MaeIII GTNAC 2 cut(s) 322, 1177
MalI GATC 4 cut(s) 648, 1134, 1239, 1283
MboI GATC 4 cut(s) 646, 1132, 1237, 1281
MboII GAAGA 5 cut(s) 292, 422, 425, 843, 1135
MfeI CAATTG 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 892
MluNI TGGCCA 1 cut(s) 892
MlyI GAGTC 2 cut(s) 383, 1304
Mox20I TGGCCA 1 cut(s) 892
MroNI GCCGGC 1 cut(s) 1142
MroXI GAANNNNTTC 1 cut(s) 417
MscI TGGCCA 1 cut(s) 892
MseI TTAA 3 cut(s) 192, 513, 671
Msp20I TGGCCA 1 cut(s) 892
MspA1I CMGCKG 3 cut(s) 642, 840, 862
MspI CCGG 4 cut(s) 587, 754, 1143, 1188
MspR9I CCNGG 2 cut(s) 203, 587
MunI CAATTG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 7 cut(s) 224, 862, 1001, 1024, 1033, 1067, 1298
NaeI GCCGGC 1 cut(s) 1144
NciI CCSGG 1 cut(s) 587
NcoI CCATGG 1 cut(s) 432
NdeII GATC 4 cut(s) 646, 1132, 1237, 1281
NgoMIV GCCGGC 1 cut(s) 1142
NheI GCTAGC 2 cut(s) 1000, 1301
NlaIII CATG 5 cut(s) 436, 872, 1051, 1139, 1277
NlaIV GGNNCC 3 cut(s) 177, 296, 1264
NmeAIII GCCGAG 1 cut(s) 1108
NmuCI GTSAC 1 cut(s) 322
NspV TTCGAA 2 cut(s) 278, 1211
PaqCI CACCTGC 1 cut(s) 434
PceI AGGCCT 1 cut(s) 1233
PdiI GCCGGC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 797
PflMI CCANNNNNTGG 1 cut(s) 208
PinAI ACCGGT 1 cut(s) 753
PkrI GCNGC 9 cut(s) 65, 104, 389, 839, 842, 864, 1029, 1063, 1141
PleI GAGTC 2 cut(s) 382, 1304
PpsI GAGTC 2 cut(s) 382, 1304
PshBI ATTAAT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 2 cut(s) 590, 1305
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 177, 296, 1264
PspPI GGNCC 6 cut(s) 151, 175, 295, 529, 584, 1290
PstI CTGCAG 1 cut(s) 997
PstNI CAGNNNCTG 1 cut(s) 1033
RsaI GTAC 1 cut(s) 1058
RsaNI GTAC 1 cut(s) 1057
SacII CCGCGG 1 cut(s) 643
SaqAI TTAA 3 cut(s) 192, 513, 671
SatI GCNGC 9 cut(s) 64, 103, 388, 838, 841, 863, 1028, 1062, 1140
Sau3AI GATC 4 cut(s) 646, 1132, 1237, 1281
Sau96I GGNCC 6 cut(s) 151, 175, 295, 529, 584, 1290
SchI GAGTC 2 cut(s) 383, 1304
ScrFI CCNGG 2 cut(s) 203, 587
SfaNI GCATC 4 cut(s) 843, 1069, 1174, 1288
SfcI CTRYAG 4 cut(s) 540, 993, 1065, 1114
Sfr303I CCGCGG 1 cut(s) 643
SfuI TTCGAA 2 cut(s) 278, 1211
SgrBI CCGCGG 1 cut(s) 643
SinI GGWCC 1 cut(s) 295
SseBI AGGCCT 1 cut(s) 1233
SsiI CCGC 4 cut(s) 640, 642, 840, 860
SspMI CTAG 4 cut(s) 488, 828, 1001, 1302
StuI AGGCCT 1 cut(s) 1233
StyD4I CCNGG 2 cut(s) 201, 585
StyI CCWWGG 2 cut(s) 432, 532
TaaI ACNGT 6 cut(s) 269, 328, 355, 369, 475, 1010
TaiI ACGT 2 cut(s) 396, 794
TaqI TCGA 4 cut(s) 164, 278, 1211, 1240
TauI GCSGC 1 cut(s) 843
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 3 cut(s) 192, 513, 671
Tru9I TTAA 3 cut(s) 192, 513, 671
TscAI CASTG 7 cut(s) 192, 331, 945, 997, 1015, 1038, 1206
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 8 cut(s) 63, 102, 387, 837, 862, 1027, 1061, 1139
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 1109
TspRI CASTG 7 cut(s) 192, 331, 945, 997, 1015, 1038, 1206
Van91I CCANNNNNTGG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 295
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 4 cut(s) 11, 95, 424, 973
XmiI GTMKAC 1 cut(s) 1041
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 4 cut(s) 488, 828, 1001, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.