Rh5CG273500

PAP-specific phosphatase HAL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002929
Physical Location & Seq
Reverse (-)
29565059 .. 29569742
4684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG273500.1

Sequence Viewer

Length: 1146 bp
ATGGAGGACGATAAGTACGCTAAGGAGTTGGACGTGGCCGTTAGAGTGGTGCACATGGCTTGTGCTCTGTGTCAGAGAGTTCAAGAGGGTTTGGTTTCAGCTAGCACTGACCAGGTGAAGTCCAAAGACGATGATTCCCCTGTAACAATTGCAGATTGGAGTGTCCAAGCCACTGTTAGCTGGATACTATCTGAATTCTTTGGGAGTCAAAATGTATCCATTATTGCTGAAGAAGATGTACAAACTCTCTCTGAGGCTGACTCAGTAGGTTTGCTGCAAGCTGTTGTGAATACTGTGAATGAATGCTTAGCTGGAGCACCTAAGTATGGTCTTAAAGGTCCATCAAAAGCCCTCACGACATCTCAAATTCTTGAGGCTATCAGCCGATGCAACTCAGTAGGAGGCCCCAAAGGAAGGCACTGGGTACTTGATCCTGTTGATGGAACATTAGGGTTTGTGCGTGGGGATCAATATGCTGTAGCTCTAGCCTTGATTGAGGATGGAAAAGCTGTTATTGGGGTACTAGGGTGCCCTAATTACCCAATGAAAAAGGAATTGCTCAATTATCATTATCAGTACCATGAAGCCATGTCAAAGTCGTCTCTACCTTCTCCTGATATATGGGAAAGAGGTTGTGTGATGTATGCGAGAAAAGACAGTGGGGAGGCATGGATGCAGCCACCCATCCATGGAGATAAGAAGTTTGAGTGGCCAAATTCTGCTAAACTTATTCGGGTTTCTTCCATCGATGACCCAGCACTGGCTACTAGTTGTGAACCTGTGGAGAAAGCAAATTCAAACCACTCCTTCACAGAAGAGCTTGCTCACAGCGTAGGGCTAAGAAAGAAGCCCATGCGTGTCTATAGCATGGTGAAATATGCAGCCATAGCTCGGGGAGATGCTGACCTGTTCATGAAGTTTGCAAGGACAGGGTACAAGGAGAAGATATGGGATCATGCTGCAGGTGTTGTCATTGTAGAAGAGGCTGGGGGTGTGGTCACTGATGCTGGAGGGCGGCCCCTGGACTTTTCAAAGGGACCATACTTAGAAGGCCTTGATAGAGGAATAATTGTTTGTTCTGGGGCCACACTGCATGAGAAAATCATTGATGCTGTTTATGCCAGCTGGGACTCTTCTAATTTATGA

Protein Analysis

381

Amino Acids

41.45

Weight (kDa)

5.29

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 45 - 374 2.5e-44 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 953
Acc36I ACCTGC 1 cut(s) 953
AccB1I GGYRCC 1 cut(s) 528
AciI CCGC 1 cut(s) 1015
AclWI GGATC 3 cut(s) 425, 474, 960
AcoI YGGCCR 2 cut(s) 36, 710
AcsI RAATTY 4 cut(s) 194, 366, 715, 793
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 6 cut(s) 17, 240, 426, 522, 578, 935
AfiI CCNNNNNNNGG 6 cut(s) 326, 414, 440, 689, 760, 891
AgsI TTSAA 3 cut(s) 83, 798, 1032
AhlI ACTAGT 1 cut(s) 767
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 2 cut(s) 111, 1020
AluBI AGCT 9 cut(s) 101, 180, 281, 311, 482, 509, 820, 890, 1125
AluI AGCT 9 cut(s) 101, 180, 281, 311, 482, 509, 820, 890, 1125
Alw21I GWGCWC 3 cut(s) 54, 67, 319
Alw26I GTCTC 1 cut(s) 606
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 3 cut(s) 425, 474, 960
Ama87I CYCGRG 1 cut(s) 891
AoxI GGCC 6 cut(s) 36, 403, 710, 1016, 1051, 1083
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 4 cut(s) 274, 676, 881, 959
ApoI RAATTY 4 cut(s) 194, 366, 715, 793
AspS9I GGNCC 5 cut(s) 338, 404, 1017, 1037, 1083
AsuHPI GGTGA 2 cut(s) 127, 883
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 891
AvaII GGWCC 2 cut(s) 338, 1037
BaeGI GKGCMC 2 cut(s) 54, 533
BaeI ACNNNNGTAYC 2 cut(s) 512, 545
BalI TGGCCA 1 cut(s) 712
BanI GGYRCC 1 cut(s) 528
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
Bbv12I GWGCWC 3 cut(s) 54, 67, 319
BbvI GCAGC 4 cut(s) 261, 688, 893, 946
BccI CCATC 5 cut(s) 349, 434, 494, 692, 752
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 113, 1022
BciVI GTATCC 2 cut(s) 177, 226
BcoDI GTCTC 1 cut(s) 606
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 4 cut(s) 102, 485, 524, 768
BfmI CTRYAG 3 cut(s) 477, 862, 960
BfuAI ACCTGC 1 cut(s) 953
BfuI GTATCC 2 cut(s) 177, 226
BisI GCNGC 5 cut(s) 275, 677, 882, 960, 1016
BlpI GCTNAGC 1 cut(s) 307
BlsI GCNGC 5 cut(s) 276, 678, 883, 961, 1017
Bme1390I CCNGG 2 cut(s) 113, 1022
Bme18I GGWCC 2 cut(s) 338, 1037
BmeT110I CYCGRG 1 cut(s) 891
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 5 cut(s) 338, 404, 1017, 1037, 1083
BmiI GGNNCC 5 cut(s) 406, 530, 1019, 1038, 1084
BmrFI CCNGG 2 cut(s) 113, 1022
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 5 cut(s) 377, 663, 889, 994, 1099
BmtI GCTAGC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 430
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 2 cut(s) 333, 1029
Bpu10I CCTNAGC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 747
BsaJI CCNNGG 2 cut(s) 688, 1020
Bsc4I CCNNNNNNNGG 6 cut(s) 326, 414, 440, 689, 760, 891
Bse1I ACTGG 2 cut(s) 425, 765
BseBI CCWGG 2 cut(s) 113, 1022
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 688, 1020
BseGI GGATG 3 cut(s) 505, 678, 684
BseLI CCNNNNNNNGG 6 cut(s) 326, 414, 440, 689, 760, 891
BseMII CTCAG 3 cut(s) 243, 276, 408
BseNI ACTGG 2 cut(s) 425, 765
BseSI GKGCMC 2 cut(s) 54, 533
BseXI GCAGC 4 cut(s) 261, 688, 893, 946
BseYI CCCAGC 3 cut(s) 754, 986, 1125
BshFI GGCC 6 cut(s) 38, 405, 712, 1018, 1053, 1085
BshNI GGYRCC 1 cut(s) 528
BshVI ATCGAT 1 cut(s) 747
BsiHKAI GWGCWC 3 cut(s) 54, 67, 319
BsiHKCI CYCGRG 1 cut(s) 891
BslFI GGGAC 2 cut(s) 1050, 1142
BslI CCNNNNNNNGG 6 cut(s) 326, 414, 440, 689, 760, 891
BsmAI GTCTC 1 cut(s) 606
BsmBI CGTCTC 1 cut(s) 606
BsmFI GGGAC 2 cut(s) 1050, 1142
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 6 cut(s) 38, 405, 712, 1018, 1053, 1085
BsoBI CYCGRG 1 cut(s) 891
Bsp1286I GDGCHC 4 cut(s) 54, 67, 319, 533
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 3 cut(s) 430, 466, 952
Bsp1720I GCTNAGC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 688
BspACI CCGC 1 cut(s) 1015
BspANI GGCC 6 cut(s) 38, 405, 712, 1018, 1053, 1085
BspCNI CTCAG 3 cut(s) 244, 275, 407
BspDI ATCGAT 1 cut(s) 747
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 5 cut(s) 406, 530, 1019, 1038, 1084
BspMAI CTGCAG 1 cut(s) 964
BspMI ACCTGC 1 cut(s) 953
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 3 cut(s) 425, 474, 960
BspQI GCTCTTC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 528
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 2 cut(s) 425, 765
BssECI CCNNGG 2 cut(s) 688, 1020
BssMI GATC 3 cut(s) 430, 466, 952
BssT1I CCWWGG 1 cut(s) 688
Bst2UI CCWGG 2 cut(s) 113, 1022
Bst4CI ACNGT 3 cut(s) 175, 295, 659
Bst6I CTCTTC 3 cut(s) 810, 975, 1138
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 4 cut(s) 103, 279, 822, 1123
BstDEI CTNAG 8 cut(s) 21, 252, 262, 307, 321, 394, 839, 1045
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 3 cut(s) 505, 678, 684
BstKTI GATC 3 cut(s) 433, 469, 955
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 3 cut(s) 430, 466, 952
BstMWI GCNNNNNNNGC 2 cut(s) 887, 1118
BstNI CCWGG 2 cut(s) 113, 1022
BstSCI CCNGG 2 cut(s) 111, 1020
BstSFI CTRYAG 3 cut(s) 477, 862, 960
BstSLI GKGCMC 2 cut(s) 54, 533
BstV1I GCAGC 4 cut(s) 261, 688, 893, 946
Bsu15I ATCGAT 1 cut(s) 747
BsuI GTATCC 2 cut(s) 177, 226
BsuRI GGCC 6 cut(s) 38, 405, 712, 1018, 1053, 1085
BsuTUI ATCGAT 1 cut(s) 747
BtgI CCRYGG 1 cut(s) 688
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 505, 678, 684
BtsI GCAGTG 1 cut(s) 1088
BtsIMutI CAGTG 7 cut(s) 105, 171, 418, 664, 758, 999, 1088
BveI ACCTGC 1 cut(s) 953
Cac8I GCNNGC 4 cut(s) 103, 279, 822, 1123
CciI TCATGA 1 cut(s) 912
Cfr13I GGNCC 5 cut(s) 338, 404, 1017, 1037, 1083
ClaI ATCGAT 1 cut(s) 747
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 6 cut(s) 16, 239, 425, 521, 577, 934
CviQI GTAC 6 cut(s) 16, 239, 425, 521, 577, 934
DdeI CTNAG 8 cut(s) 21, 252, 262, 307, 321, 394, 839, 1045
DpnI GATC 3 cut(s) 432, 468, 954
DpnII GATC 3 cut(s) 430, 466, 952
EaeI YGGCCR 2 cut(s) 36, 710
Eam1104I CTCTTC 3 cut(s) 810, 975, 1138
EarI CTCTTC 3 cut(s) 810, 975, 1138
Eco130I CCWWGG 1 cut(s) 688
Eco147I AGGCCT 1 cut(s) 1053
Eco47I GGWCC 2 cut(s) 338, 1037
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 891
EcoO109I RGGNCCY 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 111, 1020
EcoT14I CCWWGG 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 688
Esp3I CGTCTC 1 cut(s) 606
FaqI GGGAC 2 cut(s) 1050, 1142
Fnu4HI GCNGC 5 cut(s) 275, 677, 882, 960, 1016
FokI GGATG 3 cut(s) 512, 671, 685
Fsp4HI GCNGC 5 cut(s) 275, 677, 882, 960, 1016
FspBI CTAG 4 cut(s) 102, 485, 524, 768
GluI GCNGC 5 cut(s) 275, 677, 882, 960, 1016
GsaI CCCAGC 3 cut(s) 758, 990, 1129
GsuI CTGGAG 2 cut(s) 333, 1029
HaeIII GGCC 6 cut(s) 38, 405, 712, 1018, 1053, 1085
HinfI GANTC 4 cut(s) 134, 205, 260, 1130
HphI GGTGA 2 cut(s) 127, 883
Hpy166II GTNNAC 2 cut(s) 52, 776
Hpy188I TCNGA 3 cut(s) 75, 193, 253
Hpy188III TCNNGA 5 cut(s) 83, 355, 371, 614, 913
Hpy8I GTNNAC 2 cut(s) 52, 776
HpyAV CCTTC 4 cut(s) 408, 618, 817, 1043
HpyCH4III ACNGT 3 cut(s) 175, 295, 659
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 9 cut(s) 52, 152, 277, 390, 676, 881, 923, 962, 1093
HpyF10VI GCNNNNNNNGC 2 cut(s) 887, 1118
HpyF3I CTNAG 8 cut(s) 21, 252, 262, 307, 321, 394, 839, 1045
HpySE526I ACGT 1 cut(s) 33
Kzo9I GATC 3 cut(s) 430, 466, 952
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 4 cut(s) 261, 688, 893, 946
LweI GCATC 5 cut(s) 377, 663, 889, 994, 1099
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 4 cut(s) 102, 485, 524, 768
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 142, 997
MalI GATC 3 cut(s) 432, 468, 954
MboI GATC 3 cut(s) 430, 466, 952
MboII GAAGA 7 cut(s) 242, 245, 732, 827, 955, 992, 1125
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 4 cut(s) 54, 67, 319, 533
MlsI TGGCCA 1 cut(s) 712
MluNI TGGCCA 1 cut(s) 712
MlyI GAGTC 3 cut(s) 214, 254, 1124
MmeI TCCRAC 1 cut(s) 9
Mox20I TGGCCA 1 cut(s) 712
MscI TGGCCA 1 cut(s) 712
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 712
MspA1I CMGCKG 1 cut(s) 1125
MspR9I CCNGG 2 cut(s) 113, 1022
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 2 cut(s) 113, 1022
MwoI GCNNNNNNNGC 2 cut(s) 887, 1118
NcoI CCATGG 1 cut(s) 688
NdeII GATC 3 cut(s) 430, 466, 952
NheI GCTAGC 1 cut(s) 101
NlaIV GGNNCC 5 cut(s) 406, 530, 1019, 1038, 1084
NmuCI GTSAC 1 cut(s) 997
PagI TCATGA 1 cut(s) 912
PaqCI CACCTGC 1 cut(s) 953
PceI AGGCCT 1 cut(s) 1053
PciSI GCTCTTC 1 cut(s) 810
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 5 cut(s) 276, 678, 883, 961, 1017
PleI GAGTC 3 cut(s) 213, 254, 1124
PpsI GAGTC 3 cut(s) 213, 254, 1124
Psp6I CCWGG 2 cut(s) 111, 1020
PspFI CCCAGC 3 cut(s) 754, 986, 1125
PspGI CCWGG 2 cut(s) 111, 1020
PspN4I GGNNCC 5 cut(s) 406, 530, 1019, 1038, 1084
PspPI GGNCC 5 cut(s) 338, 404, 1017, 1037, 1083
PstI CTGCAG 1 cut(s) 964
PvuII CAGCTG 1 cut(s) 1125
RsaI GTAC 6 cut(s) 17, 240, 426, 522, 578, 935
RsaNI GTAC 6 cut(s) 16, 239, 425, 521, 577, 934
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 5 cut(s) 275, 677, 882, 960, 1016
Sau3AI GATC 3 cut(s) 430, 466, 952
Sau96I GGNCC 5 cut(s) 338, 404, 1017, 1037, 1083
SchI GAGTC 3 cut(s) 214, 254, 1124
ScrFI CCNGG 2 cut(s) 113, 1022
SduI GDGCHC 4 cut(s) 54, 67, 319, 533
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 5 cut(s) 377, 663, 889, 994, 1099
SfcI CTRYAG 3 cut(s) 477, 862, 960
SinI GGWCC 2 cut(s) 338, 1037
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 767
SseBI AGGCCT 1 cut(s) 1053
SsiI CCGC 1 cut(s) 1015
SspMI CTAG 4 cut(s) 102, 485, 524, 768
StuI AGGCCT 1 cut(s) 1053
StyD4I CCNGG 2 cut(s) 111, 1020
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 3 cut(s) 175, 295, 659
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 747
TatI WGTACW 1 cut(s) 238
TauI GCSGC 1 cut(s) 1018
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 7 cut(s) 112, 178, 425, 664, 765, 1006, 1095
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 4 cut(s) 274, 676, 881, 959
Tsp45I GTSAC 1 cut(s) 997
TspDTI ATGAA 5 cut(s) 315, 560, 597, 901, 929
TspRI CASTG 7 cut(s) 112, 178, 425, 664, 765, 1006, 1095
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 338, 1037
XapI RAATTY 4 cut(s) 194, 366, 715, 793
XspI CTAG 4 cut(s) 102, 485, 524, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.