Rh5AG242500

PAP-specific phosphatase HAL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002929
Physical Location & Seq
Reverse (-)
29572892 .. 29575589
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG242500.1

Sequence Viewer

Length: 846 bp
ATGGAGGACGATAAGTACGCTAAGGAGTTGGACGTGGCCGTTAGAGTGGTGCACATGGCTTGTGCTCTGTGTCAGAGAGTTCAAGAGGGTTTGGTTTCAGCTAGCACTGACCAGGTGAAGTCCAAAGACGATGATTCCCCTGTAACAATTGCAGATTGGAGTGTCCAAGCCACTGTTAGCTGGATACTATCTGAATTCTTTGGGAGTCAAAATGTATCCATTATTGCTGAAGAAGATGTACAAACTCTCTCTAAGGCTGACTCAGTAGGTTTGCTGCAAGCTGTTGTGAATACTGTGAATGAATGCTTAGCTGGAGCACCTAAGTATGGTCTTAAAGGTCCATCAAAAGCCCTCACGACATCTCAAATTCTTGAGGCTATCAGCCAATGCAACTCAGTAGGAGGCCCCAAAGGAAGGCACTGGGTACTTGATCCTGTTGATGGAACGTTAGGGTTTGTGCGTGGGGATCAATATGCTGTAGCTCTAGCCTTGATTGAGGATGGAAAAGCTGTTATTGGGGTACTAGGGTGCCCTAATTACCCAATGAAAAAGGAATTGCTCAATTATCATTATCAGTACCATGAAGCCATGTCAAAGTCGTCTCCACCTTCTCCTGATATATGGGAAAGAGGTTGTGTGATGTATGCGAGAAAAGACAGTGGGGAGGCATGGATGCAGCCACCCATCCATGGAGATAAGAAGTTTGAGTGGCCAAATTCTGCTAAACTTATTCGGGTTTCTTCCATCGATGACCCAGCACTGGCTACTAGTTGTGAACCTGTGGAGAAAGCAAATTCAAACCACTCCTTCACAGAAGAGCTTGCTCACAGCGTAGGGCTAAGGTAA

Protein Analysis

281

Amino Acids

30.55

Weight (kDa)

5.1

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 45 - 268 6.9e-21 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 528
AclI AACGTT 1 cut(s) 446
AclWI GGATC 2 cut(s) 425, 474
AcoI YGGCCR 2 cut(s) 36, 710
AcsI RAATTY 4 cut(s) 194, 366, 715, 793
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 5 cut(s) 17, 240, 426, 522, 578
AfiI CCNNNNNNNGG 5 cut(s) 326, 414, 440, 689, 760
AgsI TTSAA 2 cut(s) 83, 798
AhlI ACTAGT 1 cut(s) 767
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 7 cut(s) 101, 180, 281, 311, 482, 509, 820
AluI AGCT 7 cut(s) 101, 180, 281, 311, 482, 509, 820
Alw21I GWGCWC 3 cut(s) 54, 67, 319
Alw26I GTCTC 1 cut(s) 606
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 2 cut(s) 425, 474
AoxI GGCC 3 cut(s) 36, 403, 710
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 274, 676
ApoI RAATTY 4 cut(s) 194, 366, 715, 793
AspS9I GGNCC 2 cut(s) 338, 404
AsuHPI GGTGA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 2 cut(s) 54, 533
BaeI ACNNNNGTAYC 2 cut(s) 512, 545
BalI TGGCCA 1 cut(s) 712
BanI GGYRCC 1 cut(s) 528
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
Bbv12I GWGCWC 3 cut(s) 54, 67, 319
BbvI GCAGC 2 cut(s) 261, 688
BccI CCATC 5 cut(s) 349, 434, 494, 692, 752
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 113
BciVI GTATCC 2 cut(s) 177, 226
BcoDI GTCTC 1 cut(s) 606
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 4 cut(s) 102, 485, 524, 768
BfmI CTRYAG 1 cut(s) 477
BfuI GTATCC 2 cut(s) 177, 226
BisI GCNGC 2 cut(s) 275, 677
BlpI GCTNAGC 1 cut(s) 307
BlsI GCNGC 2 cut(s) 276, 678
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 338
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 338, 404
BmiI GGNNCC 2 cut(s) 406, 530
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 1 cut(s) 663
BmtI GCTAGC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 430
BpmI CTGGAG 1 cut(s) 333
Bpu10I CCTNAGC 2 cut(s) 21, 839
Bpu1102I GCTNAGC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 747
BsaJI CCNNGG 1 cut(s) 688
Bsc4I CCNNNNNNNGG 5 cut(s) 326, 414, 440, 689, 760
Bse1I ACTGG 2 cut(s) 425, 765
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 1 cut(s) 688
BseGI GGATG 3 cut(s) 505, 678, 684
BseLI CCNNNNNNNGG 5 cut(s) 326, 414, 440, 689, 760
BseMII CTCAG 2 cut(s) 276, 408
BseNI ACTGG 2 cut(s) 425, 765
BseSI GKGCMC 2 cut(s) 54, 533
BseXI GCAGC 2 cut(s) 261, 688
BseYI CCCAGC 1 cut(s) 754
BshFI GGCC 3 cut(s) 38, 405, 712
BshNI GGYRCC 1 cut(s) 528
BshVI ATCGAT 1 cut(s) 747
BsiHKAI GWGCWC 3 cut(s) 54, 67, 319
BslI CCNNNNNNNGG 5 cut(s) 326, 414, 440, 689, 760
BsmAI GTCTC 1 cut(s) 606
BsmBI CGTCTC 1 cut(s) 606
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 3 cut(s) 38, 405, 712
Bsp1286I GDGCHC 4 cut(s) 54, 67, 319, 533
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 430, 466
Bsp1720I GCTNAGC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 688
BspANI GGCC 3 cut(s) 38, 405, 712
BspCNI CTCAG 2 cut(s) 275, 407
BspDI ATCGAT 1 cut(s) 747
BspLI GGNNCC 2 cut(s) 406, 530
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 425, 474
BspQI GCTCTTC 1 cut(s) 810
BspT107I GGYRCC 1 cut(s) 528
BsrGI TGTACA 1 cut(s) 238
BsrI ACTGG 2 cut(s) 425, 765
BssECI CCNNGG 1 cut(s) 688
BssMI GATC 2 cut(s) 430, 466
BssT1I CCWWGG 1 cut(s) 688
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 3 cut(s) 175, 295, 659
Bst6I CTCTTC 1 cut(s) 810
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 3 cut(s) 103, 279, 822
BstDEI CTNAG 7 cut(s) 21, 252, 262, 307, 321, 394, 839
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 3 cut(s) 505, 678, 684
BstKTI GATC 2 cut(s) 433, 469
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 2 cut(s) 430, 466
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 2 cut(s) 54, 533
BstV1I GCAGC 2 cut(s) 261, 688
Bsu15I ATCGAT 1 cut(s) 747
BsuI GTATCC 2 cut(s) 177, 226
BsuRI GGCC 3 cut(s) 38, 405, 712
BsuTUI ATCGAT 1 cut(s) 747
BtgI CCRYGG 1 cut(s) 688
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 505, 678, 684
BtsIMutI CAGTG 5 cut(s) 105, 171, 418, 664, 758
Cac8I GCNNGC 3 cut(s) 103, 279, 822
Cfr13I GGNCC 2 cut(s) 338, 404
ClaI ATCGAT 1 cut(s) 747
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 5 cut(s) 16, 239, 425, 521, 577
CviAII CATG 5 cut(s) 55, 581, 589, 669, 689
CviQI GTAC 5 cut(s) 16, 239, 425, 521, 577
DdeI CTNAG 7 cut(s) 21, 252, 262, 307, 321, 394, 839
DpnI GATC 2 cut(s) 432, 468
DpnII GATC 2 cut(s) 430, 466
EaeI YGGCCR 2 cut(s) 36, 710
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 688
Esp3I CGTCTC 1 cut(s) 606
FaeI CATG 5 cut(s) 58, 584, 592, 672, 692
FatI CATG 5 cut(s) 54, 580, 588, 668, 688
Fnu4HI GCNGC 2 cut(s) 275, 677
FokI GGATG 3 cut(s) 512, 671, 685
Fsp4HI GCNGC 2 cut(s) 275, 677
FspBI CTAG 4 cut(s) 102, 485, 524, 768
GluI GCNGC 2 cut(s) 275, 677
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 3 cut(s) 38, 405, 712
Hin1II CATG 5 cut(s) 58, 584, 592, 672, 692
HinfI GANTC 3 cut(s) 134, 205, 260
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 2 cut(s) 52, 776
Hpy188I TCNGA 2 cut(s) 75, 193
Hpy188III TCNNGA 4 cut(s) 83, 355, 371, 614
Hpy8I GTNNAC 2 cut(s) 52, 776
HpyAV CCTTC 3 cut(s) 408, 618, 817
HpyCH4III ACNGT 3 cut(s) 175, 295, 659
HpyCH4IV ACGT 2 cut(s) 33, 446
HpyCH4V TGCA 5 cut(s) 52, 152, 277, 390, 676
HpyF3I CTNAG 7 cut(s) 21, 252, 262, 307, 321, 394, 839
HpySE526I ACGT 2 cut(s) 33, 446
Hsp92II CATG 5 cut(s) 58, 584, 592, 672, 692
Kzo9I GATC 2 cut(s) 430, 466
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 2 cut(s) 261, 688
LweI GCATC 1 cut(s) 663
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 4 cut(s) 102, 485, 524, 768
MaeII ACGT 2 cut(s) 33, 446
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 432, 468
MboI GATC 2 cut(s) 430, 466
MboII GAAGA 4 cut(s) 242, 245, 732, 827
MfeI CAATTG 1 cut(s) 147
MhlI GDGCHC 4 cut(s) 54, 67, 319, 533
MlsI TGGCCA 1 cut(s) 712
MluCI AATT 8 cut(s) 147, 194, 366, 535, 554, 562, 715, 793
MluNI TGGCCA 1 cut(s) 712
MlyI GAGTC 2 cut(s) 214, 254
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 7 cut(s) 79, 362, 367, 395, 490, 623, 658
Mox20I TGGCCA 1 cut(s) 712
MscI TGGCCA 1 cut(s) 712
MseI TTAA 1 cut(s) 333
Msp20I TGGCCA 1 cut(s) 712
MspR9I CCNGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 688
NdeII GATC 2 cut(s) 430, 466
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 5 cut(s) 58, 584, 592, 672, 692
NlaIV GGNNCC 2 cut(s) 406, 530
PciSI GCTCTTC 1 cut(s) 810
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 276, 678
PleI GAGTC 2 cut(s) 213, 254
PpsI GAGTC 2 cut(s) 213, 254
Psp1406I AACGTT 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 406, 530
PspPI GGNCC 2 cut(s) 338, 404
RsaI GTAC 5 cut(s) 17, 240, 426, 522, 578
RsaNI GTAC 5 cut(s) 16, 239, 425, 521, 577
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 275, 677
Sau3AI GATC 2 cut(s) 430, 466
Sau96I GGNCC 2 cut(s) 338, 404
SchI GAGTC 2 cut(s) 214, 254
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 4 cut(s) 54, 67, 319, 533
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 1 cut(s) 663
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 8 cut(s) 147, 194, 366, 535, 554, 562, 715, 793
SspMI CTAG 4 cut(s) 102, 485, 524, 768
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 3 cut(s) 175, 295, 659
TaiI ACGT 2 cut(s) 36, 449
TaqI TCGA 1 cut(s) 747
TasI AATT 8 cut(s) 147, 194, 366, 535, 554, 562, 715, 793
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 5 cut(s) 112, 178, 425, 664, 765
TseI GCWGC 2 cut(s) 274, 676
TspDTI ATGAA 3 cut(s) 315, 560, 597
TspRI CASTG 5 cut(s) 112, 178, 425, 664, 765
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 4 cut(s) 194, 366, 715, 793
XspI CTAG 4 cut(s) 102, 485, 524, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.