Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002929

Physical Location & Seq

Genomic Coordinates Reverse (-)

29375790 .. 29379611

Gene Structure 3822 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGGACGATAAGTACGCTAAGGAGTTGGACGTGGCCGTTAGAGTGGTGCACATGGCTTGTGCTCTGTGTCAGAGAGTTCAAGAGGGTTTGGTTTCAGCTAGCACTGACCAGGTGAAGTCCAAAGACGATGATTCCCCTGTAACAATTGCAGATTGGAGTGTCCAAGCAACTGTTAGCTGGATACTATCTGAATTCTTTGGGAGTCAAAATGTATCCATTATTGCTGAAGAAGATGTACAAACTCTCTCTAAGGCTGACTCAGTAGGTTTGCTGCAAGCTGTTGTGAATACCGTGAATGAATGCTTAGCTGGAGCACCTAAGTATGGTCTTAAAGGTCCATCAAAAGCCCTCACGACATCTCAAATTCTTGAGGCTATCAGCCGATGCAACTCAGTAGGAGGCCCCAAAGGAAGGCACTGGGTACTTGATCCTGTTGATGGAACATTAGGGTTTGTTCGTGGGGATCAATATGCTGTAGCTCTAGCCTTGATTGAGGATGGAAAAGCTGTTATTGGGGTACTAGGGTGCCCTAATTACCCAATGAAAAAGGAATTGCTTAATTATCATTATCAGTACCATGAAGCCATGTCAAAGTCGTCTCCACCTTCTCCTGATATATGGGAAAGAGGCTGTGTGATGTATGCGAGAAAAGACAGTGGGGAGGCATGGATGCAGCCACCCATCCATGGAGATAAGAAGTTTGAGTGGCCAAATTCTGCTAAACTTATTCGGGTTTCTTCCATCAATGACCCAGCACTGGCTACCAGTTGTGAACCTGTGGAGAAAGCAAATTCAAACCACTCCTTCACAGAAGAGCTTGCTCACAGCGTAGGGCTAAGAAAGAAGCCCATGCGTGTCTATAGCATGGTGAAATATGCAGCCATAGCTCGGGGAGATGCTGAGCTGTTCATGAAGTTTGCAAGGACAGGGTACAAGGAGAAGATATGGGATCATGCTGCAGCTGGGACTCTTCTAATTTATGAGGCTTTCTGTACCATGCCGATAGATTGTTGTGGTGGTAAATTTGCATATTTGGTGAGGGCAAACAAATTGCTGAGAAGGATTCTTGACGGCGCTCGCCTGCATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

365

Amino Acids

40.05

Weight (kDa)

6.75

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inositol_P	PF00459	45 - 333	5.7e-32	Inositol monophosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54390
fragaria_vesca	FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g20770 FvH4_3g20770
malus_domestica	MD03G1221700.v1.1 MD05G1323300.v1.1 MD10G1301100.v1.1 MD11G1239100.v1.1
prunus_persica	Prupe.4G039300_v2.0.a1 Prupe.4G187800_v2.0.a1
pyrus_communis	pycom03g17050 pycom05g29760 pycom10g25400 pycom11g21080
rosa_chinensis	RchiOBHm_Chr5g0006821 RchiOBHm_Chr5g0035001
rosa_laevigata	RLG00000031431 RLG00000033591
rosa_multiflora	Rmu_sc0001044.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045390 Rroxscaffold_1G00069230
rosa_rugosa	Rorug04G0424700 Rorug05G0149400 Rorug05G0149500
rosa_samantha	Rh5AG052400 Rh5AG242500 Rh5BG051400 Rh5BG242100 Rh5CG060000 Rh5CG273500 Rh5DG050600 Rh5DG250600
rosa_wichuraiana	Rw5G005220 Rw5G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	528
AclWI	GGATC	3 cut(s)	425, 474, 960
AcoI	YGGCCR	2 cut(s)	36, 710
AcsI	RAATTY	5 cut(s)	194, 366, 715, 793, 1025
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	7 cut(s)	17, 240, 426, 522, 578, 935, 997
AfiI	CCNNNNNNNGG	6 cut(s)	326, 414, 440, 689, 760, 891
AgsI	TTSAA	2 cut(s)	83, 798
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	111
Alw21I	GWGCWC	3 cut(s)	54, 67, 319
Alw26I	GTCTC	1 cut(s)	606
Alw44I	GTGCAC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	425, 474, 960
Ama87I	CYCGRG	1 cut(s)	891
AoxI	GGCC	3 cut(s)	36, 403, 710
ApaLI	GTGCAC	1 cut(s)	50
ApeKI	GCWGC	5 cut(s)	274, 676, 881, 959, 962
ApoI	RAATTY	5 cut(s)	194, 366, 715, 793, 1025
AspLEI	GCGC	1 cut(s)	1079
AspS9I	GGNCC	2 cut(s)	338, 404
AsuHPI	GGTGA	3 cut(s)	127, 883, 1051
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	891
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	2 cut(s)	54, 533
BaeI	ACNNNNGTAYC	2 cut(s)	512, 545
BalI	TGGCCA	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	222, 254
Bbv12I	GWGCWC	3 cut(s)	54, 67, 319
BbvI	GCAGC	5 cut(s)	261, 688, 893, 946, 974
BccI	CCATC	5 cut(s)	349, 434, 494, 692, 752
BceAI	ACGGC	2 cut(s)	23, 1090
BciT130I	CCWGG	1 cut(s)	113
BciVI	GTATCC	2 cut(s)	177, 226
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	3 cut(s)	102, 485, 524
BfmI	CTRYAG	3 cut(s)	477, 862, 960
BfoI	RGCGCY	1 cut(s)	1080
BfuI	GTATCC	2 cut(s)	177, 226
BisI	GCNGC	5 cut(s)	275, 677, 882, 960, 963
BlpI	GCTNAGC	2 cut(s)	307, 903
BlsI	GCNGC	5 cut(s)	276, 678, 883, 961, 964
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	891
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	338, 404
BmiI	GGNNCC	2 cut(s)	406, 530
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	3 cut(s)	377, 663, 889
BmtI	GCTAGC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu1102I	GCTNAGC	2 cut(s)	307, 903
BpuEI	CTTGAG	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	6 cut(s)	326, 414, 440, 689, 760, 891
Bse1I	ACTGG	3 cut(s)	425, 765, 768
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	688
BseGI	GGATG	3 cut(s)	505, 678, 684
BseLI	CCNNNNNNNGG	6 cut(s)	326, 414, 440, 689, 760, 891
BseMII	CTCAG	4 cut(s)	276, 408, 894, 1049
BseNI	ACTGG	3 cut(s)	425, 765, 768
BseSI	GKGCMC	2 cut(s)	54, 533
BseXI	GCAGC	5 cut(s)	261, 688, 893, 946, 974
BseYI	CCCAGC	2 cut(s)	754, 965
BshFI	GGCC	3 cut(s)	38, 405, 712
BshNI	GGYRCC	1 cut(s)	528
BsiHKAI	GWGCWC	3 cut(s)	54, 67, 319
BsiHKCI	CYCGRG	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	982
BslI	CCNNNNNNNGG	6 cut(s)	326, 414, 440, 689, 760, 891
BsmAI	GTCTC	1 cut(s)	606
BsmBI	CGTCTC	1 cut(s)	606
BsmFI	GGGAC	1 cut(s)	982
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	38, 405, 712
BsoBI	CYCGRG	1 cut(s)	891
Bsp1286I	GDGCHC	4 cut(s)	54, 67, 319, 533
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	430, 466, 952
Bsp1720I	GCTNAGC	2 cut(s)	307, 903
Bsp19I	CCATGG	1 cut(s)	688
BspANI	GGCC	3 cut(s)	38, 405, 712
BspCNI	CTCAG	4 cut(s)	275, 407, 895, 1050
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	2 cut(s)	406, 530
BspMAI	CTGCAG	1 cut(s)	964
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	3 cut(s)	425, 474, 960
BspQI	GCTCTTC	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	425, 765, 768
BssECI	CCNNGG	1 cut(s)	688
BssMI	GATC	3 cut(s)	430, 466, 952
BssT1I	CCWWGG	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	3 cut(s)	175, 295, 659
Bst6I	CTCTTC	2 cut(s)	810, 978
BstAUI	TGTACA	1 cut(s)	238
BstC8I	GCNNGC	5 cut(s)	103, 279, 822, 1081, 1085
BstDEI	CTNAG	9 cut(s)	21, 252, 262, 307, 321, 394, 839, 903, 1058
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	3 cut(s)	505, 678, 684
BstH2I	RGCGCY	1 cut(s)	1080
BstHHI	GCGC	1 cut(s)	1079
BstKTI	GATC	3 cut(s)	433, 469, 955
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	3 cut(s)	430, 466, 952
BstMWI	GCNNNNNNNGC	1 cut(s)	887
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	3 cut(s)	477, 862, 960
BstSLI	GKGCMC	2 cut(s)	54, 533
BstV1I	GCAGC	5 cut(s)	261, 688, 893, 946, 974
BsuI	GTATCC	2 cut(s)	177, 226
BsuRI	GGCC	3 cut(s)	38, 405, 712
BtgI	CCRYGG	1 cut(s)	688
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	505, 678, 684
BtsIMutI	CAGTG	4 cut(s)	105, 418, 664, 758
Cac8I	GCNNGC	5 cut(s)	103, 279, 822, 1081, 1085
CciI	TCATGA	1 cut(s)	912
CfoI	GCGC	1 cut(s)	1079
Cfr13I	GGNCC	2 cut(s)	338, 404
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	7 cut(s)	16, 239, 425, 521, 577, 934, 996
CviQI	GTAC	7 cut(s)	16, 239, 425, 521, 577, 934, 996
DdeI	CTNAG	9 cut(s)	21, 252, 262, 307, 321, 394, 839, 903, 1058
DpnI	GATC	3 cut(s)	432, 468, 954
DpnII	GATC	3 cut(s)	430, 466, 952
EaeI	YGGCCR	2 cut(s)	36, 710
Eam1104I	CTCTTC	2 cut(s)	810, 978
EarI	CTCTTC	2 cut(s)	810, 978
Eco130I	CCWWGG	1 cut(s)	688
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	891
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	606
FaqI	GGGAC	1 cut(s)	982
Fnu4HI	GCNGC	5 cut(s)	275, 677, 882, 960, 963
FokI	GGATG	3 cut(s)	512, 671, 685
Fsp4HI	GCNGC	5 cut(s)	275, 677, 882, 960, 963
FspBI	CTAG	3 cut(s)	102, 485, 524
GlaI	GCGC	1 cut(s)	1078
GluI	GCNGC	5 cut(s)	275, 677, 882, 960, 963
GsaI	CCCAGC	2 cut(s)	758, 969
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	1080
HaeIII	GGCC	3 cut(s)	38, 405, 712
HhaI	GCGC	1 cut(s)	1079
Hin6I	GCGC	1 cut(s)	1077
HinP1I	GCGC	1 cut(s)	1077
HinfI	GANTC	5 cut(s)	134, 205, 260, 970, 1066
HphI	GGTGA	3 cut(s)	127, 883, 1051
Hpy166II	GTNNAC	2 cut(s)	52, 776
Hpy188I	TCNGA	2 cut(s)	75, 193
Hpy188III	TCNNGA	6 cut(s)	83, 355, 371, 614, 913, 1070
Hpy8I	GTNNAC	2 cut(s)	52, 776
HpyAV	CCTTC	4 cut(s)	408, 618, 817, 1056
HpyCH4III	ACNGT	3 cut(s)	175, 295, 659
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	887
HpyF3I	CTNAG	9 cut(s)	21, 252, 262, 307, 321, 394, 839, 903, 1058
HpySE526I	ACGT	1 cut(s)	33
HspAI	GCGC	1 cut(s)	1077
Kzo9I	GATC	3 cut(s)	430, 466, 952
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	5 cut(s)	261, 688, 893, 946, 974
LweI	GCATC	3 cut(s)	377, 663, 889
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	3 cut(s)	102, 485, 524
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	3 cut(s)	432, 468, 954
MboI	GATC	3 cut(s)	430, 466, 952
MboII	GAAGA	6 cut(s)	242, 245, 732, 827, 955, 965
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	4 cut(s)	54, 67, 319, 533
MlsI	TGGCCA	1 cut(s)	712
MluNI	TGGCCA	1 cut(s)	712
MlyI	GAGTC	3 cut(s)	214, 254, 964
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	9 cut(s)	79, 362, 367, 395, 490, 623, 658, 979, 1035
Mox20I	TGGCCA	1 cut(s)	712
MscI	TGGCCA	1 cut(s)	712
MseI	TTAA	2 cut(s)	333, 561
Msp20I	TGGCCA	1 cut(s)	712
MspA1I	CMGCKG	1 cut(s)	965
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	147
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	887
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	3 cut(s)	430, 466, 952
NheI	GCTAGC	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	406, 530
PagI	TCATGA	1 cut(s)	912
PciSI	GCTCTTC	1 cut(s)	810
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	134, 1066
PkrI	GCNGC	5 cut(s)	276, 678, 883, 961, 964
PleI	GAGTC	3 cut(s)	213, 254, 964
PpsI	GAGTC	3 cut(s)	213, 254, 964
Psp6I	CCWGG	1 cut(s)	111
PspFI	CCCAGC	2 cut(s)	754, 965
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	406, 530
PspPI	GGNCC	2 cut(s)	338, 404
PstI	CTGCAG	1 cut(s)	964
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	7 cut(s)	17, 240, 426, 522, 578, 935, 997
RsaNI	GTAC	7 cut(s)	16, 239, 425, 521, 577, 934, 996
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	333, 561
SatI	GCNGC	5 cut(s)	275, 677, 882, 960, 963
Sau3AI	GATC	3 cut(s)	430, 466, 952
Sau96I	GGNCC	2 cut(s)	338, 404
SchI	GAGTC	3 cut(s)	214, 254, 964
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	4 cut(s)	54, 67, 319, 533
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	3 cut(s)	377, 663, 889
SfcI	CTRYAG	3 cut(s)	477, 862, 960
SinI	GGWCC	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SspMI	CTAG	3 cut(s)	102, 485, 524
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	3 cut(s)	175, 295, 659
TaiI	ACGT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	134, 1066
Tru1I	TTAA	2 cut(s)	333, 561
Tru9I	TTAA	2 cut(s)	333, 561
TscAI	CASTG	4 cut(s)	112, 425, 664, 765
TseI	GCWGC	5 cut(s)	274, 676, 881, 959, 962
TspDTI	ATGAA	5 cut(s)	315, 560, 597, 901, 929
TspRI	CASTG	4 cut(s)	112, 425, 664, 765
VneI	GTGCAC	1 cut(s)	50
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	5 cut(s)	194, 366, 715, 793, 1025
XspI	CTAG	3 cut(s)	102, 485, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.