Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001044.1

Orthogroup ID

OG0002929

Physical Location & Seq

Genomic Coordinates Reverse (-)

133011 .. 135750

Gene Structure 2740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001044.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggaggaaccaaaaagtttgagtctttcatccctacaatccatgaagcacacccaagaattggaaactgcagtcagagctgtgcaaatggcttgttcactctgccagaaagttcaggagagtttgatttccaagtccagcgctgtggttcaatccaaaggtgacaactctccagtcactgttgcagattggagtgtccaagcaactgtgagctggatactgtcggagtcttttgggagtagcaatgtgtccattgtagctgaagaagacattcaaaacctgtccaaggctaaggcaggtggagtattggaagcagtagtaaaaactgtaaatgattgtctagctgaagcacctcgttttggacttcaaggtccgaaaaaggcccttgggactacagaggttcttgaagccatcagtcggtgcaactcaaggggaggccctactgggagattttgggctcttgaccctgttgatggaacattgggttttgttcgaggggatcaatatgctatagctctggctctaatagaggatggagaagttgtgcttggagttcttggatgccctaattacccaatgagaaaagaatggctaaactatcatcaccggtatcatagaattatatccaaattgactccaccaacatcagaatcatgggacaaaggctgtgtaatatatgctagaagaggtagtggtgaggcttggatgcaacccttgctccatgtaaacaagaactttttgtggccaaactctgcaaaacctgtccaagtgtcctccatcgataatccatcattggcaaccttttgtgaacctgttgagaaggcaaattcaagtcattccttcacagcaggactagctcacagtgttggacttaggaagcaaccattaagagtatatagcatggtgaaatatgcagcaatagctcgtggggatgccgagatttttatgaagtttgcaagggctggttacaaagagaagatatgggatcatgcagctggtgttgtcatcatacaggaggctggtggtgtggtttcagacgccggggggtgtccactggacttttcaaagggtatatacttggaaggtcttgatcgaggtgtgatagctagtgccggagcaaacctacatgacaagatcatcagggctgttgatgctagctgggactcctctagtctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

392

Amino Acids

42.29

Weight (kDa)

6.76

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54390
fragaria_vesca	FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g20770 FvH4_3g20770
malus_domestica	MD03G1221700.v1.1 MD05G1323300.v1.1 MD10G1301100.v1.1 MD11G1239100.v1.1
prunus_persica	Prupe.4G039300_v2.0.a1 Prupe.4G187800_v2.0.a1
pyrus_communis	pycom03g17050 pycom05g29760 pycom10g25400 pycom11g21080
rosa_chinensis	RchiOBHm_Chr5g0006821 RchiOBHm_Chr5g0035001
rosa_laevigata	RLG00000031431 RLG00000033591
rosa_multiflora	Rmu_sc0001044.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045390 Rroxscaffold_1G00069230
rosa_rugosa	Rorug04G0424700 Rorug05G0149400 Rorug05G0149500
rosa_samantha	Rh5AG052400 Rh5AG242500 Rh5BG051400 Rh5BG242100 Rh5CG060000 Rh5CG273500 Rh5DG050600 Rh5DG250600
rosa_wichuraiana	Rw5G005220 Rw5G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	287
AasI	GACNNNNNNGTC	1 cut(s)	369
Acc36I	ACCTGC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	61
AclWI	GGATC	2 cut(s)	507, 993
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	2 cut(s)	282, 366
AcyI	GRCGYC	1 cut(s)	1038
AfeI	AGCGCT	1 cut(s)	142
AfiI	CCNNNNNNNGG	5 cut(s)	61, 286, 359, 417, 473
AgeI	ACCGGT	1 cut(s)	606
AgsI	TTSAA	6 cut(s)	152, 275, 368, 407, 831, 1065
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AlwI	GGATC	2 cut(s)	507, 993
AlwNI	CAGNNNCTG	1 cut(s)	179
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	3 cut(s)	381, 436, 743
ApeKI	GCWGC	2 cut(s)	914, 992
ApoI	RAATTY	1 cut(s)	826
AsiGI	ACCGGT	1 cut(s)	606
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	3 cut(s)	371, 382, 437
AsuC2I	CCSGG	1 cut(s)	1042
AsuHPI	GGTGA	4 cut(s)	173, 596, 707, 916
AsuNHI	GCTAGC	1 cut(s)	1154
AvaII	GGWCC	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	745
BanII	GRGCYC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	924
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	926, 1004
BccI	CCATC	5 cut(s)	419, 467, 527, 785, 796
BciVI	GTATCC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	1042
BfaI	CTAG	6 cut(s)	341, 681, 854, 1107, 1155, 1170
BfmI	CTRYAG	4 cut(s)	69, 393, 510, 1175
BfoI	RGCGCY	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	2 cut(s)	915, 993
BlsI	GCNGC	2 cut(s)	916, 994
Bme1390I	CCNGG	1 cut(s)	1042
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	371, 382, 437
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	1042
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	4 cut(s)	551, 696, 922, 1141
BmtI	GCTAGC	1 cut(s)	1158
BmuI	ACTGGG	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	1042
Bsa29I	ATCGAT	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	1038
BsaJI	CCNNGG	3 cut(s)	285, 385, 1041
BsaWI	WCCGGW	1 cut(s)	606
BsaXI	ACNNNNNCTCC	4 cut(s)	528, 558, 702, 732
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 286, 359, 417, 473
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	3 cut(s)	173, 448, 1059
Bse3DI	GCAATG	1 cut(s)	250
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	3 cut(s)	285, 385, 1041
BseGI	GGATG	5 cut(s)	29, 538, 566, 711, 937
BseLI	CCNNNNNNNGG	5 cut(s)	61, 286, 359, 417, 473
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	3 cut(s)	173, 448, 1059
BseRI	GAGGAG	1 cut(s)	1156
BseXI	GCAGC	2 cut(s)	926, 1004
BseYI	CCCAGC	1 cut(s)	1158
BshFI	GGCC	3 cut(s)	383, 438, 745
BshTI	ACCGGT	1 cut(s)	606
BshVI	ATCGAT	1 cut(s)	780
BsiSI	CCGG	3 cut(s)	607, 1041, 1113
BslFI	GGGAC	3 cut(s)	403, 671, 1175
BslI	CCNNNNNNNGG	5 cut(s)	61, 286, 359, 417, 473
BsmFI	GGGAC	3 cut(s)	403, 671, 1175
BsnI	GGCC	3 cut(s)	383, 438, 745
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	499, 985, 1090, 1134
BspANI	GGCC	3 cut(s)	383, 438, 745
BspDI	ATCGAT	1 cut(s)	780
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	287
BspOI	GCTAGC	1 cut(s)	1158
BspPI	GGATC	2 cut(s)	507, 993
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	3 cut(s)	173, 448, 1059
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	3 cut(s)	285, 385, 1041
BssMI	GATC	4 cut(s)	499, 985, 1090, 1134
BssNI	GRCGYC	1 cut(s)	1038
BssSI	CACGAG	1 cut(s)	924
BssT1I	CCWWGG	2 cut(s)	285, 385
Bst2BI	CACGAG	1 cut(s)	924
Bst4CI	ACNGT	5 cut(s)	181, 208, 222, 328, 863
Bst6I	CTCTTC	1 cut(s)	679
BstACI	GRCGYC	1 cut(s)	1038
BstAPI	GCANNNNNTGC	1 cut(s)	715
BstC8I	GCNNGC	1 cut(s)	1156
BstDEI	CTNAG	2 cut(s)	291, 872
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	5 cut(s)	29, 538, 566, 711, 937
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	4 cut(s)	502, 988, 1093, 1137
BstMBI	GATC	4 cut(s)	499, 985, 1090, 1134
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 715, 854, 920, 1151
BstSCI	CCNGG	1 cut(s)	1040
BstSFI	CTRYAG	4 cut(s)	69, 393, 510, 1175
BstV1I	GCAGC	2 cut(s)	926, 1004
BstV2I	GAAGAC	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	3 cut(s)	383, 438, 745
BsuTUI	ATCGAT	1 cut(s)	780
BtsCI	GGATG	5 cut(s)	29, 538, 566, 711, 937
BtsIMutI	CAGTG	3 cut(s)	177, 868, 1052
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	1156
CaiI	CAGNNNCTG	1 cut(s)	179
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	606
Cfr13I	GGNCC	3 cut(s)	371, 382, 437
ClaI	ATCGAT	1 cut(s)	780
CseI	GACGC	1 cut(s)	1046
CspAI	ACCGGT	1 cut(s)	606
CviAII	CATG	6 cut(s)	43, 654, 722, 901, 989, 1127
DdeI	CTNAG	2 cut(s)	291, 872
DpnI	GATC	4 cut(s)	501, 987, 1092, 1136
DpnII	GATC	4 cut(s)	499, 985, 1090, 1134
DrdI	GACNNNNNNGTC	1 cut(s)	369
DseDI	GACNNNNNNGTC	1 cut(s)	369
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	285, 385
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	282, 366
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoO109I	RGGNCCY	2 cut(s)	382, 437
EcoT14I	CCWWGG	2 cut(s)	285, 385
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	2 cut(s)	285, 385
FaeI	CATG	6 cut(s)	46, 657, 725, 904, 992, 1130
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	3 cut(s)	403, 671, 1175
FatI	CATG	6 cut(s)	42, 653, 721, 900, 988, 1126
Fnu4HI	GCNGC	2 cut(s)	915, 993
FokI	GGATG	5 cut(s)	16, 545, 573, 718, 944
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	915, 993
FspBI	CTAG	6 cut(s)	341, 681, 854, 1107, 1155, 1170
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	915, 993
GsaI	CCCAGC	1 cut(s)	1162
GsuI	CTGGAG	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	383, 438, 745
HapII	CCGG	3 cut(s)	607, 1041, 1113
HgaI	GACGC	1 cut(s)	1046
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	1038
Hin1II	CATG	6 cut(s)	46, 657, 725, 904, 992, 1130
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	5 cut(s)	22, 227, 634, 650, 1163
HpaII	CCGG	3 cut(s)	607, 1041, 1113
HphI	GGTGA	4 cut(s)	173, 596, 707, 916
Hpy166II	GTNNAC	4 cut(s)	98, 727, 809, 1052
Hpy188I	TCNGA	5 cut(s)	77, 226, 375, 649, 1036
Hpy188III	TCNNGA	4 cut(s)	116, 404, 461, 1088
Hpy8I	GTNNAC	4 cut(s)	98, 727, 809, 1052
HpyAV	CCTTC	3 cut(s)	814, 850, 1076
HpyCH4III	ACNGT	5 cut(s)	181, 208, 222, 328, 863
HpyCH4V	TGCA	9 cut(s)	71, 85, 185, 423, 709, 755, 914, 956, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 715, 854, 920, 1151
HpyF3I	CTNAG	2 cut(s)	291, 872
Hsp92I	GRCGYC	1 cut(s)	1038
Hsp92II	CATG	6 cut(s)	46, 657, 725, 904, 992, 1130
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	499, 985, 1090, 1134
LmnI	GCTCC	2 cut(s)	723, 1115
Lsp1109I	GCAGC	2 cut(s)	926, 1004
LweI	GCATC	4 cut(s)	551, 696, 922, 1141
MaeI	CTAG	6 cut(s)	341, 681, 854, 1107, 1155, 1170
MaeIII	GTNAC	3 cut(s)	161, 175, 965
MalI	GATC	4 cut(s)	501, 987, 1092, 1136
MboI	GATC	4 cut(s)	499, 985, 1090, 1134
MboII	GAAGA	4 cut(s)	275, 278, 696, 988
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	5 cut(s)	59, 568, 618, 629, 826
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	4 cut(s)	31, 236, 628, 1157
MmeI	TCCRAC	2 cut(s)	204, 847
Mox20I	TGGCCA	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	1 cut(s)	887
Msp20I	TGGCCA	1 cut(s)	745
MspA1I	CMGCKG	1 cut(s)	995
MspI	CCGG	3 cut(s)	607, 1041, 1113
MspR9I	CCNGG	1 cut(s)	1042
MwoI	GCNNNNNNNGC	5 cut(s)	77, 715, 854, 920, 1151
NciI	CCSGG	1 cut(s)	1042
NdeII	GATC	4 cut(s)	499, 985, 1090, 1134
NheI	GCTAGC	1 cut(s)	1154
NlaIII	CATG	6 cut(s)	46, 657, 725, 904, 992, 1130
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	961
NmuCI	GTSAC	2 cut(s)	161, 175
PaqCI	CACCTGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	650
PflMI	CCANNNNNTGG	1 cut(s)	61
PinAI	ACCGGT	1 cut(s)	606
PkrI	GCNGC	2 cut(s)	916, 994
PleI	GAGTC	4 cut(s)	30, 235, 628, 1157
PpsI	GAGTC	4 cut(s)	30, 235, 628, 1157
PspFI	CCCAGC	1 cut(s)	1158
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	3 cut(s)	371, 382, 437
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	995
SaqAI	TTAA	1 cut(s)	887
SatI	GCNGC	2 cut(s)	915, 993
Sau3AI	GATC	4 cut(s)	499, 985, 1090, 1134
Sau96I	GGNCC	3 cut(s)	371, 382, 437
SchI	GAGTC	4 cut(s)	31, 236, 628, 1157
ScrFI	CCNGG	1 cut(s)	1042
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	4 cut(s)	551, 696, 922, 1141
SfcI	CTRYAG	4 cut(s)	69, 393, 510, 1175
SinI	GGWCC	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	5 cut(s)	59, 568, 618, 629, 826
SspMI	CTAG	6 cut(s)	341, 681, 854, 1107, 1155, 1170
StyD4I	CCNGG	1 cut(s)	1040
StyI	CCWWGG	2 cut(s)	285, 385
TaaI	ACNGT	5 cut(s)	181, 208, 222, 328, 863
TaqI	TCGA	3 cut(s)	493, 780, 1093
TasI	AATT	5 cut(s)	59, 568, 618, 629, 826
TfiI	GAWTC	1 cut(s)	650
Tru1I	TTAA	1 cut(s)	887
Tru9I	TTAA	1 cut(s)	887
TscAI	CASTG	3 cut(s)	184, 868, 1059
TseFI	GTSAC	2 cut(s)	161, 175
TseI	GCWGC	2 cut(s)	914, 992
Tsp45I	GTSAC	2 cut(s)	161, 175
TspDTI	ATGAA	3 cut(s)	18, 59, 962
TspRI	CASTG	3 cut(s)	184, 868, 1059
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	826
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	6 cut(s)	341, 681, 854, 1107, 1155, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.