Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002929

Physical Location & Seq

Genomic Coordinates Forward (+)

18177425 .. 18180408

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGGGCGGGAGATACGGCGAGGAGCTGGATGTGGCGGTGAGAGTGGTTCACATGGCGTGTGCTCTGTGTCAGAGGCTACAGGAGGGGTTGGTGTCAGGTGGCAGTGGCCTCGTTAAGTCCAAGGACGATGATTCTCCTGTGACTGTAGCAGATTGGAGTGTGCAAGCAACCGTTAGCTGGATACTGTCTCAGTTCTTTGGGAGTCAAAATGTATCCATTATTGCTGAAGAAGATGTACAAACGCTGTCTCAGGCTGAGTCAGCAGGTTTGCTGGAAGCTGTTGTAAACACTGTTAATGAATGCTTAGCTGGAGCACCCAAGTATGGTCTTAAAAGTCCACCAAAATCCCTCAACACCGCTCAAGTTCTTGAGGCTATCAGCCGATGCAACTCAGAGGGAGGCCCCAAAGGTAGACATTGGGTACTTGATCCTATTGACGGAACATTAGGGTTTGTACGTGGGGATCAATATGCTGTAGCTTTAGCATTGATAGAGGATGGAAAAGTTGTTATTGGAGTACTTGGGTGCCCAAATTACCCAATGAAGAAGGAATTGCTCAGTTATCATTATCAGTACCATGAAACCATGTCAAGGTTGTCTCCACCTTCTGAGGATATGTGGGAAAGAGGTTGTGTGATGTATGCGAGGAGAGGCAGTGGTGAGGCATGGATGCAGCCACCAATCCATGGGGATAAGAAGTTTGTGTGGCCGAATTCTGCAAGACTTGTTCGGGTTTCTTCCATCGATGACCCCGCACTGGCCACTTGTTGTGAACCTGTCGAGAAAGCAAATTCAGACCACTCCTTTACAGCAGGACTTGCTCACAGCGTAGGGTTTAGAAATCAACCCCTCCGTGTCTATAGCATGGTGAAATATGCAGCCATAGCTCGAGGAGATGCTGAGCTATTCATGAAGTTTGCAAGGACTGGATACAAGGAGAAGATATGGGATCACGCTGCTGGTGTTGTCATTGTAGAAGAGGCCGGAGGTGTTGTAACTGATGCTGGAGGGCGTCCCCTAGACTTTTCAAAAGGACCTTACTTAGAAGGACTTGACAGGGGCATAGTTGTTTGTTCTGGGGCAACACTGCATGAGAAAATCATTGATGCCGTGTATGCCAGCTGGGACTCTTCTAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

382

Amino Acids

41.24

Weight (kDa)

5.36

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54390
fragaria_vesca	FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g20770 FvH4_3g20770
malus_domestica	MD03G1221700.v1.1 MD05G1323300.v1.1 MD10G1301100.v1.1 MD11G1239100.v1.1
prunus_persica	Prupe.4G039300_v2.0.a1 Prupe.4G187800_v2.0.a1
pyrus_communis	pycom03g17050 pycom05g29760 pycom10g25400 pycom11g21080
rosa_chinensis	RchiOBHm_Chr5g0006821 RchiOBHm_Chr5g0035001
rosa_laevigata	RLG00000031431 RLG00000033591
rosa_multiflora	Rmu_sc0001044.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045390 Rroxscaffold_1G00069230
rosa_rugosa	Rorug04G0424700 Rorug05G0149400 Rorug05G0149500
rosa_samantha	Rh5AG052400 Rh5AG242500 Rh5BG051400 Rh5BG242100 Rh5CG060000 Rh5CG273500 Rh5DG050600 Rh5DG250600
rosa_wichuraiana	Rw5G005220 Rw5G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccBSI	CCGCTC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	4 cut(s)	9, 38, 360, 756
AclWI	GGATC	3 cut(s)	425, 474, 960
AcoI	YGGCCR	2 cut(s)	710, 762
AcsI	RAATTY	2 cut(s)	715, 793
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	1015
AfaI	GTAC	5 cut(s)	240, 426, 459, 522, 578
AfiI	CCNNNNNNNGG	6 cut(s)	180, 326, 440, 594, 689, 760
AgsI	TTSAA	1 cut(s)	1032
AluBI	AGCT	8 cut(s)	28, 180, 281, 311, 482, 890, 907, 1125
AluI	AGCT	8 cut(s)	28, 180, 281, 311, 482, 890, 907, 1125
Alw21I	GWGCWC	2 cut(s)	67, 319
Alw26I	GTCTC	3 cut(s)	195, 255, 606
AlwI	GGATC	3 cut(s)	425, 474, 960
Ama87I	CYCGRG	1 cut(s)	891
AoxI	GGCC	5 cut(s)	109, 403, 710, 762, 984
ApeKI	GCWGC	3 cut(s)	676, 881, 959
ApoI	RAATTY	2 cut(s)	715, 793
AspS9I	GGNCC	2 cut(s)	404, 1037
AsuHPI	GGTGA	3 cut(s)	52, 674, 883
AvaI	CYCGRG	1 cut(s)	891
AvaII	GGWCC	1 cut(s)	1037
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	222, 254
Bbv12I	GWGCWC	2 cut(s)	67, 319
BbvI	GCAGC	3 cut(s)	688, 893, 946
BccI	CCATC	2 cut(s)	494, 752
BceAI	ACGGC	2 cut(s)	34, 1097
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciVI	GTATCC	3 cut(s)	177, 226, 926
BcoDI	GTCTC	3 cut(s)	195, 255, 606
BfaI	CTAG	1 cut(s)	1022
BfmI	CTRYAG	4 cut(s)	80, 147, 477, 862
BfuAI	ACCTGC	1 cut(s)	257
BfuI	GTATCC	3 cut(s)	177, 226, 926
BisI	GCNGC	3 cut(s)	677, 882, 960
BlpI	GCTNAGC	2 cut(s)	307, 903
BlsI	GCNGC	3 cut(s)	678, 883, 961
BmcAI	AGTACT	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	1037
BmeT110I	CYCGRG	1 cut(s)	891
BmgT120I	GGNCC	2 cut(s)	404, 1037
BmiI	GGNNCC	2 cut(s)	406, 530
BmsI	GCATC	5 cut(s)	377, 663, 889, 994, 1099
BpmI	CTGGAG	2 cut(s)	333, 1029
Bpu1102I	GCTNAGC	2 cut(s)	307, 903
BpuEI	CTTGAG	2 cut(s)	348, 392
Bsa29I	ATCGAT	1 cut(s)	747
BsaAI	YACGTR	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	1015
BsaJI	CCNNGG	2 cut(s)	123, 688
BsaXI	ACNNNNNCTCC	4 cut(s)	643, 673, 981, 1011
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 326, 440, 594, 689, 760
Bse1I	ACTGG	2 cut(s)	765, 934
BseCI	ATCGAT	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	123, 688
BseGI	GGATG	3 cut(s)	37, 505, 678
BseLI	CCNNNNNNNGG	6 cut(s)	180, 326, 440, 594, 689, 760
BseMII	CTCAG	7 cut(s)	206, 249, 266, 408, 574, 603, 894
BseNI	ACTGG	2 cut(s)	765, 934
BseRI	GAGGAG	3 cut(s)	38, 664, 909
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	3 cut(s)	688, 893, 946
BseYI	CCCAGC	1 cut(s)	1125
BshFI	GGCC	5 cut(s)	111, 405, 712, 764, 986
BshNI	GGYRCC	1 cut(s)	528
BshVI	ATCGAT	1 cut(s)	747
BsiHKAI	GWGCWC	2 cut(s)	67, 319
BsiHKCI	CYCGRG	1 cut(s)	891
BsiSI	CCGG	1 cut(s)	987
BslFI	GGGAC	2 cut(s)	1002, 1142
BslI	CCNNNNNNNGG	6 cut(s)	180, 326, 440, 594, 689, 760
BsmAI	GTCTC	3 cut(s)	195, 255, 606
BsmFI	GGGAC	2 cut(s)	1002, 1142
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	5 cut(s)	111, 405, 712, 764, 986
BsoBI	CYCGRG	1 cut(s)	891
Bsp1286I	GDGCHC	3 cut(s)	67, 319, 533
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	430, 466, 952
Bsp1720I	GCTNAGC	2 cut(s)	307, 903
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	4 cut(s)	9, 38, 360, 756
BspANI	GGCC	5 cut(s)	111, 405, 712, 764, 986
BspCNI	CTCAG	7 cut(s)	205, 250, 265, 407, 573, 604, 895
BspDI	ATCGAT	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	2 cut(s)	406, 530
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	425, 474, 960
BspT107I	GGYRCC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	765, 934
BssECI	CCNNGG	2 cut(s)	123, 688
BssMI	GATC	3 cut(s)	430, 466, 952
BssNI	GRCGYC	1 cut(s)	1015
BssT1I	CCWWGG	2 cut(s)	123, 688
Bst4CI	ACNGT	4 cut(s)	148, 175, 189, 295
Bst6I	CTCTTC	2 cut(s)	975, 1138
BstACI	GRCGYC	1 cut(s)	1015
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstAUI	TGTACA	1 cut(s)	238
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	168, 1123
BstDEI	CTNAG	9 cut(s)	192, 252, 258, 307, 394, 560, 612, 903, 1045
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	3 cut(s)	37, 505, 678
BstKTI	GATC	3 cut(s)	433, 469, 955
BstMAI	GTCTC	3 cut(s)	195, 255, 606
BstMBI	GATC	3 cut(s)	430, 466, 952
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 821, 887, 1118
BstSFI	CTRYAG	4 cut(s)	80, 147, 477, 862
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	3 cut(s)	688, 893, 946
Bsu15I	ATCGAT	1 cut(s)	747
BsuI	GTATCC	3 cut(s)	177, 226, 926
BsuRI	GGCC	5 cut(s)	111, 405, 712, 764, 986
BsuTUI	ATCGAT	1 cut(s)	747
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	37, 505, 678
BtsI	GCAGTG	3 cut(s)	112, 664, 1088
BtsIMutI	CAGTG	5 cut(s)	112, 291, 664, 758, 1088
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	168, 1123
CciI	TCATGA	1 cut(s)	912
Cfr13I	GGNCC	2 cut(s)	404, 1037
ClaI	ATCGAT	1 cut(s)	747
CseI	GACGC	1 cut(s)	1004
Csp6I	GTAC	5 cut(s)	239, 425, 458, 521, 577
CviAII	CATG	8 cut(s)	55, 581, 589, 669, 689, 868, 913, 1094
CviQI	GTAC	5 cut(s)	239, 425, 458, 521, 577
DdeI	CTNAG	9 cut(s)	192, 252, 258, 307, 394, 560, 612, 903, 1045
DpnI	GATC	3 cut(s)	432, 468, 954
DpnII	GATC	3 cut(s)	430, 466, 952
EaeI	YGGCCR	2 cut(s)	710, 762
Eam1104I	CTCTTC	2 cut(s)	975, 1138
EarI	CTCTTC	2 cut(s)	975, 1138
Eco130I	CCWWGG	2 cut(s)	123, 688
Eco47I	GGWCC	1 cut(s)	1037
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	891
EcoO109I	RGGNCCY	2 cut(s)	404, 1037
EcoRI	GAATTC	1 cut(s)	715
EcoT14I	CCWWGG	2 cut(s)	123, 688
ErhI	CCWWGG	2 cut(s)	123, 688
FaeI	CATG	8 cut(s)	58, 584, 592, 672, 692, 871, 916, 1097
FaqI	GGGAC	2 cut(s)	1002, 1142
FatI	CATG	8 cut(s)	54, 580, 588, 668, 688, 867, 912, 1093
FauI	CCCGC	2 cut(s)	2, 763
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	677, 882, 960
FokI	GGATG	3 cut(s)	44, 512, 685
Fsp4HI	GCNGC	3 cut(s)	677, 882, 960
FspBI	CTAG	1 cut(s)	1022
GluI	GCNGC	3 cut(s)	677, 882, 960
GsaI	CCCAGC	1 cut(s)	1129
GsuI	CTGGAG	2 cut(s)	333, 1029
HaeIII	GGCC	5 cut(s)	111, 405, 712, 764, 986
HapII	CCGG	1 cut(s)	987
HgaI	GACGC	1 cut(s)	1004
Hin1I	GRCGYC	1 cut(s)	1015
Hin1II	CATG	8 cut(s)	58, 584, 592, 672, 692, 871, 916, 1097
HinfI	GANTC	4 cut(s)	134, 205, 260, 1130
HpaII	CCGG	1 cut(s)	987
HphI	GGTGA	3 cut(s)	52, 674, 883
Hpy166II	GTNNAC	5 cut(s)	52, 289, 341, 416, 776
Hpy188I	TCNGA	4 cut(s)	75, 397, 613, 799
Hpy188III	TCNNGA	3 cut(s)	371, 784, 913
Hpy8I	GTNNAC	5 cut(s)	52, 289, 341, 416, 776
HpyAV	CCTTC	3 cut(s)	544, 618, 1043
HpyCH4III	ACNGT	4 cut(s)	148, 175, 189, 295
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	7 cut(s)	166, 390, 676, 722, 881, 923, 1093
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 821, 887, 1118
HpyF3I	CTNAG	9 cut(s)	192, 252, 258, 307, 394, 560, 612, 903, 1045
HpySE526I	ACGT	1 cut(s)	460
Hsp92I	GRCGYC	1 cut(s)	1015
Hsp92II	CATG	8 cut(s)	58, 584, 592, 672, 692, 871, 916, 1097
Kzo9I	GATC	3 cut(s)	430, 466, 952
LmnI	GCTCC	2 cut(s)	25, 314
Lsp1109I	GCAGC	3 cut(s)	688, 893, 946
LweI	GCATC	5 cut(s)	377, 663, 889, 994, 1099
MaeI	CTAG	1 cut(s)	1022
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	2 cut(s)	142, 997
MalI	GATC	3 cut(s)	432, 468, 954
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	3 cut(s)	430, 466, 952
MboII	GAAGA	7 cut(s)	242, 245, 559, 732, 955, 992, 1125
MhlI	GDGCHC	3 cut(s)	67, 319, 533
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	5 cut(s)	535, 554, 715, 793, 1138
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	3 cut(s)	214, 269, 1124
Mox20I	TGGCCA	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	3 cut(s)	117, 297, 333
Msp20I	TGGCCA	1 cut(s)	764
MspA1I	CMGCKG	1 cut(s)	1125
MspI	CCGG	1 cut(s)	987
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	263, 821, 887, 1118
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	3 cut(s)	430, 466, 952
NlaIII	CATG	8 cut(s)	58, 584, 592, 672, 692, 871, 916, 1097
NlaIV	GGNNCC	2 cut(s)	406, 530
NmuCI	GTSAC	1 cut(s)	142
PaeR7I	CTCGAG	1 cut(s)	891
PagI	TCATGA	1 cut(s)	912
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	134
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	3 cut(s)	678, 883, 961
PleI	GAGTC	3 cut(s)	213, 268, 1124
PpsI	GAGTC	3 cut(s)	213, 268, 1124
Ppu21I	YACGTR	1 cut(s)	461
PpuMI	RGGWCCY	1 cut(s)	1037
Psp5II	RGGWCCY	1 cut(s)	1037
PspFI	CCCAGC	1 cut(s)	1125
PspN4I	GGNNCC	2 cut(s)	406, 530
PspPI	GGNCC	2 cut(s)	404, 1037
PspPPI	RGGWCCY	1 cut(s)	1037
PspXI	VCTCGAGB	1 cut(s)	891
PvuII	CAGCTG	1 cut(s)	1125
RsaI	GTAC	5 cut(s)	240, 426, 459, 522, 578
RsaNI	GTAC	5 cut(s)	239, 425, 458, 521, 577
SaqAI	TTAA	3 cut(s)	117, 297, 333
SatI	GCNGC	3 cut(s)	677, 882, 960
Sau3AI	GATC	3 cut(s)	430, 466, 952
Sau96I	GGNCC	2 cut(s)	404, 1037
ScaI	AGTACT	1 cut(s)	522
SchI	GAGTC	3 cut(s)	214, 269, 1124
SduI	GDGCHC	3 cut(s)	67, 319, 533
SfaNI	GCATC	5 cut(s)	377, 663, 889, 994, 1099
SfcI	CTRYAG	4 cut(s)	80, 147, 477, 862
Sfr274I	CTCGAG	1 cut(s)	891
SinI	GGWCC	1 cut(s)	1037
SlaI	CTCGAG	1 cut(s)	891
SmlI	CTYRAG	3 cut(s)	363, 371, 891
SmoI	CTYRAG	3 cut(s)	363, 371, 891
Sse9I	AATT	5 cut(s)	535, 554, 715, 793, 1138
SsiI	CCGC	4 cut(s)	9, 38, 360, 756
SspMI	CTAG	1 cut(s)	1022
StyI	CCWWGG	2 cut(s)	123, 688
TaaI	ACNGT	4 cut(s)	148, 175, 189, 295
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	3 cut(s)	747, 783, 892
TasI	AATT	5 cut(s)	535, 554, 715, 793, 1138
TatI	WGTACW	2 cut(s)	238, 520
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	3 cut(s)	117, 297, 333
Tru9I	TTAA	3 cut(s)	117, 297, 333
TscAI	CASTG	5 cut(s)	112, 298, 664, 765, 1095
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	676, 881, 959
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	5 cut(s)	315, 560, 597, 901, 929
TspGWI	ACGGA	2 cut(s)	456, 845
TspRI	CASTG	5 cut(s)	112, 298, 664, 765, 1095
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	1037
XapI	RAATTY	2 cut(s)	715, 793
XhoI	CTCGAG	1 cut(s)	891
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	1 cut(s)	1022
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.