Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002929

Physical Location & Seq

Genomic Coordinates Reverse (-)

11184964 .. 11190022

Gene Structure 5059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G187800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGGGTGAGAAATACGCTAAGGAGCTGGATGTGGCCGTCAGAGTCGTTCACATGGCGTGTTCTCTGTGTCAGAGACTGCAACAGGGGATTGTTTCAGCTGGCAGTGACCTGGTTAAGTCCAAGGAAGACGATTCTCCTGTGACTGTTGCCGATTGGAGTGTGCAAGCTACTGTTAGCTGGATACTGTCTGAATTCTTTGGGAGTCAAAATGTATCCATTATTGCTGAAGAGGATGTACAAACTCTCTCTAAGGCTGACTCAGCAAGTTTGCTAGAAGCTGTTGTGAACACTGTGAATGAATGCCTAGCTCGAGCATCCAAGTATGGTCTTAAAAGTCCACCAAAAGCCCTCAACACGTCTCAAGTTCTTGAGGCTATCAGCCGATGCAACTCAGTAGGAGGCCCCAAAGGAAGACATTGGGTACTTGATCCTGTTGATGGAACATTAGGGTTTGTTCGTGGGGATCAATATGCTGTAGCTCTAGCCTTGGTCGAGGATGGAAAAGTTGTTATTGGTGTACTAGGGTGCCCTAACTACCCAATGAAGAAGGAATTGCTCAGCTATCATTATCAGTACCATGAAACCATGTCAAGGTTATCTCCACCTTCTGATGATATGTGGGAAAGAGGTTGTGTCATGTATGCAAAAAGAGGCAGTGGTGAGGCATGGATGCAGCCACCAATCCCTGGAGATAAGAAGTTTGTGTGGCCAAATTCTGCAAGACTTGTTCGGGTTTCTTCCATTGATGACCCCAAACTGGCTACTTGTTGTGAACCTGTGGAGAAAGCAAACTCAGACCACTCCTTCACAGCAGGACTTGCTCACAGCGTAGGGCTTAGAAATCAGCCCCTACGTGTGTATAGCATGGTGAAATATGCTGCCATAGCTCGAGGAGATGCTGAGCTATTCATGAAGTTTGCAAGGACTGGGTACAAAGAGAAGATATGGGATCATGCTGCTGGTGTTGTCATTGTAGAAGAGGCTGGAGGTGTCGTAACTGATGCTGGAGGCCACCCCCTGGACTTTTCAAAGGGACCGTACTTAGAAGGACTTGATAGAGGCATAGTTGTTTGTTCTGGGGCCACACTGCATGAGAAAATCATTGATGCAGTGTATGCCAGCTGGGATTCTTCTAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008252 GO:0008441 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 ko01130 map00920 map01100 map01120 map01130

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

382

Amino Acids

41.37

Weight (kDa)

5.65

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54390
fragaria_vesca	FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g04430 FvH4_3g20770 FvH4_3g20770
malus_domestica	MD03G1221700.v1.1 MD05G1323300.v1.1 MD10G1301100.v1.1 MD11G1239100.v1.1
prunus_persica	Prupe.4G039300_v2.0.a1 Prupe.4G187800_v2.0.a1
pyrus_communis	pycom03g17050 pycom05g29760 pycom10g25400 pycom11g21080
rosa_chinensis	RchiOBHm_Chr5g0006821 RchiOBHm_Chr5g0035001
rosa_laevigata	RLG00000031431 RLG00000033591
rosa_multiflora	Rmu_sc0001044.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045390 Rroxscaffold_1G00069230
rosa_rugosa	Rorug04G0424700 Rorug05G0149400 Rorug05G0149500
rosa_samantha	Rh5AG052400 Rh5AG242500 Rh5BG051400 Rh5BG242100 Rh5CG060000 Rh5CG273500 Rh5DG050600 Rh5DG250600
rosa_wichuraiana	Rw5G005220 Rw5G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	2 cut(s)	689, 1021
AclWI	GGATC	3 cut(s)	425, 474, 960
AcoI	YGGCCR	2 cut(s)	36, 710
AcsI	RAATTY	2 cut(s)	194, 715
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	6 cut(s)	240, 426, 522, 578, 935, 1043
AfiI	CCNNNNNNNGG	5 cut(s)	440, 594, 689, 760, 1021
AflIII	ACRYGT	2 cut(s)	357, 856
AgsI	TTSAA	1 cut(s)	1032
AjiI	CACGTC	1 cut(s)	360
AjnI	CCWGG	3 cut(s)	111, 688, 1020
Alw26I	GTCTC	2 cut(s)	70, 366
AlwI	GGATC	3 cut(s)	425, 474, 960
AlwNI	CAGNNNCTG	1 cut(s)	79
Ama87I	CYCGRG	2 cut(s)	312, 891
AoxI	GGCC	5 cut(s)	36, 403, 710, 1012, 1083
ApeKI	GCWGC	3 cut(s)	676, 881, 959
ApoI	RAATTY	2 cut(s)	194, 715
AspS9I	GGNCC	3 cut(s)	404, 1037, 1083
AsuHPI	GGTGA	3 cut(s)	20, 674, 883
AvaI	CYCGRG	2 cut(s)	312, 891
AvaII	GGWCC	1 cut(s)	1037
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	712
BanI	GGYRCC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	222, 254
BbsI	GAAGAC	2 cut(s)	135, 421
BbvI	GCAGC	3 cut(s)	688, 868, 946
BccI	CCATC	2 cut(s)	434, 494
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	3 cut(s)	113, 690, 1022
BciVI	GTATCC	2 cut(s)	177, 226
BcoDI	GTCTC	2 cut(s)	70, 366
BfaI	CTAG	4 cut(s)	275, 308, 485, 524
BfmI	CTRYAG	1 cut(s)	477
BfuI	GTATCC	2 cut(s)	177, 226
BisI	GCNGC	3 cut(s)	677, 882, 960
BlpI	GCTNAGC	2 cut(s)	560, 903
BlsI	GCNGC	3 cut(s)	678, 883, 961
Bme1390I	CCNGG	3 cut(s)	113, 690, 1022
Bme18I	GGWCC	1 cut(s)	1037
BmeT110I	CYCGRG	2 cut(s)	312, 891
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	3 cut(s)	404, 1037, 1083
BmiI	GGNNCC	4 cut(s)	406, 530, 1038, 1084
BmrFI	CCNGG	3 cut(s)	113, 690, 1022
BmrI	ACTGGG	1 cut(s)	939
BmsI	GCATC	6 cut(s)	326, 377, 663, 889, 994, 1099
BmuI	ACTGGG	1 cut(s)	939
BpiI	GAAGAC	2 cut(s)	135, 421
BpmI	CTGGAG	3 cut(s)	711, 1008, 1029
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu1102I	GCTNAGC	2 cut(s)	560, 903
BpuEI	CTTGAG	2 cut(s)	348, 392
BsaAI	YACGTR	1 cut(s)	857
BsaJI	CCNNGG	4 cut(s)	123, 489, 688, 1020
BsaXI	ACNNNNNCTCC	2 cut(s)	981, 1011
Bsc4I	CCNNNNNNNGG	5 cut(s)	440, 594, 689, 760, 1021
Bse1I	ACTGG	2 cut(s)	765, 934
BseBI	CCWGG	3 cut(s)	113, 690, 1022
BseDI	CCNNGG	4 cut(s)	123, 489, 688, 1020
BseGI	GGATG	5 cut(s)	37, 241, 317, 505, 678
BseLI	CCNNNNNNNGG	5 cut(s)	440, 594, 689, 760, 1021
BseMII	CTCAG	5 cut(s)	276, 408, 574, 810, 894
BseNI	ACTGG	2 cut(s)	765, 934
BseRI	GAGGAG	1 cut(s)	909
BseSI	GKGCMC	1 cut(s)	533
BseXI	GCAGC	3 cut(s)	688, 868, 946
BseYI	CCCAGC	1 cut(s)	1125
BshFI	GGCC	5 cut(s)	38, 405, 712, 1014, 1085
BshNI	GGYRCC	1 cut(s)	528
BsiHKCI	CYCGRG	2 cut(s)	312, 891
BslFI	GGGAC	1 cut(s)	1050
BslI	CCNNNNNNNGG	5 cut(s)	440, 594, 689, 760, 1021
BsmAI	GTCTC	2 cut(s)	70, 366
BsmBI	CGTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	1050
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	5 cut(s)	38, 405, 712, 1014, 1085
BsoBI	CYCGRG	2 cut(s)	312, 891
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	430, 466, 952
Bsp1720I	GCTNAGC	2 cut(s)	560, 903
BspANI	GGCC	5 cut(s)	38, 405, 712, 1014, 1085
BspCNI	CTCAG	5 cut(s)	275, 407, 573, 809, 895
BspHI	TCATGA	1 cut(s)	912
BspLI	GGNNCC	4 cut(s)	406, 530, 1038, 1084
BspPI	GGATC	3 cut(s)	425, 474, 960
BspT107I	GGYRCC	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	765, 934
BssECI	CCNNGG	4 cut(s)	123, 489, 688, 1020
BssMI	GATC	3 cut(s)	430, 466, 952
BssT1I	CCWWGG	2 cut(s)	123, 489
Bst2UI	CCWGG	3 cut(s)	113, 690, 1022
Bst4CI	ACNGT	5 cut(s)	148, 175, 189, 295, 1041
Bst6I	CTCTTC	2 cut(s)	225, 975
BstAPI	GCANNNNNTGC	2 cut(s)	821, 1118
BstAUI	TGTACA	1 cut(s)	238
BstBAI	YACGTR	1 cut(s)	857
BstC8I	GCNNGC	3 cut(s)	103, 168, 1123
BstDEI	CTNAG	9 cut(s)	21, 252, 262, 394, 560, 796, 839, 903, 1045
BstF5I	GGATG	5 cut(s)	37, 241, 317, 505, 678
BstKTI	GATC	3 cut(s)	433, 469, 955
BstMAI	GTCTC	2 cut(s)	70, 366
BstMBI	GATC	3 cut(s)	430, 466, 952
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 821, 887, 1118
BstNI	CCWGG	3 cut(s)	113, 690, 1022
BstSCI	CCNGG	3 cut(s)	111, 688, 1020
BstSFI	CTRYAG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	533
BstV1I	GCAGC	3 cut(s)	688, 868, 946
BstV2I	GAAGAC	2 cut(s)	135, 421
BsuI	GTATCC	2 cut(s)	177, 226
BsuRI	GGCC	5 cut(s)	38, 405, 712, 1014, 1085
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	5 cut(s)	37, 241, 317, 505, 678
BtsI	GCAGTG	4 cut(s)	112, 664, 1088, 1119
BtsIMutI	CAGTG	5 cut(s)	112, 291, 664, 1088, 1119
Cac8I	GCNNGC	3 cut(s)	103, 168, 1123
CaiI	CAGNNNCTG	1 cut(s)	79
CciI	TCATGA	1 cut(s)	912
Cfr13I	GGNCC	3 cut(s)	404, 1037, 1083
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	6 cut(s)	239, 425, 521, 577, 934, 1042
CviAII	CATG	9 cut(s)	55, 581, 589, 640, 669, 868, 913, 956, 1094
CviQI	GTAC	6 cut(s)	239, 425, 521, 577, 934, 1042
DdeI	CTNAG	9 cut(s)	21, 252, 262, 394, 560, 796, 839, 903, 1045
DpnI	GATC	3 cut(s)	432, 468, 954
DpnII	GATC	3 cut(s)	430, 466, 952
EaeI	YGGCCR	2 cut(s)	36, 710
Eam1104I	CTCTTC	2 cut(s)	225, 975
EarI	CTCTTC	2 cut(s)	225, 975
Eco130I	CCWWGG	2 cut(s)	123, 489
Eco47I	GGWCC	1 cut(s)	1037
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	312, 891
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	3 cut(s)	111, 688, 1020
EcoT14I	CCWWGG	2 cut(s)	123, 489
ErhI	CCWWGG	2 cut(s)	123, 489
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	9 cut(s)	58, 584, 592, 643, 672, 871, 916, 959, 1097
FaqI	GGGAC	1 cut(s)	1050
FatI	CATG	9 cut(s)	54, 580, 588, 639, 668, 867, 912, 955, 1093
Fnu4HI	GCNGC	3 cut(s)	677, 882, 960
FokI	GGATG	5 cut(s)	44, 248, 304, 512, 685
Fsp4HI	GCNGC	3 cut(s)	677, 882, 960
FspBI	CTAG	4 cut(s)	275, 308, 485, 524
GluI	GCNGC	3 cut(s)	677, 882, 960
GsaI	CCCAGC	1 cut(s)	1129
GsuI	CTGGAG	3 cut(s)	711, 1008, 1029
HaeIII	GGCC	5 cut(s)	38, 405, 712, 1014, 1085
Hin1II	CATG	9 cut(s)	58, 584, 592, 643, 672, 871, 916, 959, 1097
HinfI	GANTC	5 cut(s)	45, 134, 205, 260, 1130
HphI	GGTGA	3 cut(s)	20, 674, 883
Hpy166II	GTNNAC	5 cut(s)	52, 289, 341, 521, 776
Hpy188I	TCNGA	5 cut(s)	44, 75, 193, 613, 799
Hpy188III	TCNNGA	2 cut(s)	371, 913
Hpy8I	GTNNAC	5 cut(s)	52, 289, 341, 521, 776
HpyAV	CCTTC	4 cut(s)	544, 618, 817, 1043
HpyCH4III	ACNGT	5 cut(s)	148, 175, 189, 295, 1041
HpyCH4IV	ACGT	2 cut(s)	359, 856
HpyCH4V	TGCA	9 cut(s)	82, 166, 390, 647, 676, 722, 923, 1093, 1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 821, 887, 1118
HpyF3I	CTNAG	9 cut(s)	21, 252, 262, 394, 560, 796, 839, 903, 1045
HpySE526I	ACGT	2 cut(s)	359, 856
Hsp92II	CATG	9 cut(s)	58, 584, 592, 643, 672, 871, 916, 959, 1097
Kzo9I	GATC	3 cut(s)	430, 466, 952
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	3 cut(s)	688, 868, 946
LweI	GCATC	6 cut(s)	326, 377, 663, 889, 994, 1099
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	4 cut(s)	275, 308, 485, 524
MaeII	ACGT	2 cut(s)	359, 856
MaeIII	GTNAC	3 cut(s)	107, 142, 997
MalI	GATC	3 cut(s)	432, 468, 954
MboI	GATC	3 cut(s)	430, 466, 952
MboII	GAAGA	8 cut(s)	140, 242, 426, 559, 732, 955, 992, 1125
MhlI	GDGCHC	1 cut(s)	533
MlsI	TGGCCA	1 cut(s)	712
MluCI	AATT	4 cut(s)	194, 554, 715, 1138
MluNI	TGGCCA	1 cut(s)	712
MlyI	GAGTC	3 cut(s)	54, 214, 254
Mox20I	TGGCCA	1 cut(s)	712
MscI	TGGCCA	1 cut(s)	712
MseI	TTAA	2 cut(s)	117, 333
Msp20I	TGGCCA	1 cut(s)	712
MspA1I	CMGCKG	2 cut(s)	101, 1125
MspR9I	CCNGG	3 cut(s)	113, 690, 1022
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	3 cut(s)	113, 690, 1022
MwoI	GCNNNNNNNGC	4 cut(s)	263, 821, 887, 1118
NdeII	GATC	3 cut(s)	430, 466, 952
NlaIII	CATG	9 cut(s)	58, 584, 592, 643, 672, 871, 916, 959, 1097
NlaIV	GGNNCC	4 cut(s)	406, 530, 1038, 1084
NmuCI	GTSAC	2 cut(s)	107, 142
PaeR7I	CTCGAG	2 cut(s)	312, 891
PagI	TCATGA	1 cut(s)	912
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	134, 1130
PflMI	CCANNNNNTGG	2 cut(s)	689, 1021
PkrI	GCNGC	3 cut(s)	678, 883, 961
PleI	GAGTC	3 cut(s)	53, 213, 254
PpsI	GAGTC	3 cut(s)	53, 213, 254
Ppu21I	YACGTR	1 cut(s)	857
Psp6I	CCWGG	3 cut(s)	111, 688, 1020
PspFI	CCCAGC	1 cut(s)	1125
PspGI	CCWGG	3 cut(s)	111, 688, 1020
PspN4I	GGNNCC	4 cut(s)	406, 530, 1038, 1084
PspPI	GGNCC	3 cut(s)	404, 1037, 1083
PspXI	VCTCGAGB	2 cut(s)	312, 891
PstNI	CAGNNNCTG	1 cut(s)	79
PvuII	CAGCTG	2 cut(s)	101, 1125
RsaI	GTAC	6 cut(s)	240, 426, 522, 578, 935, 1043
RsaNI	GTAC	6 cut(s)	239, 425, 521, 577, 934, 1042
SaqAI	TTAA	2 cut(s)	117, 333
SatI	GCNGC	3 cut(s)	677, 882, 960
Sau3AI	GATC	3 cut(s)	430, 466, 952
Sau96I	GGNCC	3 cut(s)	404, 1037, 1083
SchI	GAGTC	3 cut(s)	54, 214, 254
ScrFI	CCNGG	3 cut(s)	113, 690, 1022
SduI	GDGCHC	1 cut(s)	533
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	6 cut(s)	326, 377, 663, 889, 994, 1099
SfcI	CTRYAG	1 cut(s)	477
Sfr274I	CTCGAG	2 cut(s)	312, 891
SinI	GGWCC	1 cut(s)	1037
SlaI	CTCGAG	2 cut(s)	312, 891
SmlI	CTYRAG	4 cut(s)	312, 363, 371, 891
SmoI	CTYRAG	4 cut(s)	312, 363, 371, 891
Sse9I	AATT	4 cut(s)	194, 554, 715, 1138
SspMI	CTAG	4 cut(s)	275, 308, 485, 524
StyD4I	CCNGG	3 cut(s)	111, 688, 1020
StyI	CCWWGG	2 cut(s)	123, 489
TaaI	ACNGT	5 cut(s)	148, 175, 189, 295, 1041
TaiI	ACGT	2 cut(s)	362, 859
TaqI	TCGA	3 cut(s)	313, 495, 892
TasI	AATT	4 cut(s)	194, 554, 715, 1138
TatI	WGTACW	2 cut(s)	238, 520
TfiI	GAWTC	2 cut(s)	134, 1130
Tru1I	TTAA	2 cut(s)	117, 333
Tru9I	TTAA	2 cut(s)	117, 333
TscAI	CASTG	5 cut(s)	112, 298, 664, 1095, 1119
TseFI	GTSAC	2 cut(s)	107, 142
TseI	GCWGC	3 cut(s)	676, 881, 959
Tsp45I	GTSAC	2 cut(s)	107, 142
TspDTI	ATGAA	5 cut(s)	315, 560, 597, 901, 929
TspRI	CASTG	5 cut(s)	112, 298, 664, 1095, 1119
Van91I	CCANNNNNTGG	2 cut(s)	689, 1021
VpaK11BI	GGWCC	1 cut(s)	1037
XapI	RAATTY	2 cut(s)	194, 715
XhoI	CTCGAG	2 cut(s)	312, 891
XspI	CTAG	4 cut(s)	275, 308, 485, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.