RLG00000031431

PAP-specific phosphatase HAL2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002929
Physical Location & Seq
Forward (+)
5093067 .. 5095761
2695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031431

Sequence Viewer

Length: 1347 bp
ATGGCTATAAAAGCCTCTCACAATTTAGGACTTGTGAAATTGAATAACAAGCGCAAGTTCATAATCAACCACGTAGGAGCAGTTAGCTTCTCTAAAACCCACCACCACAGAATCTCGAAACCCATTGGCTGCTTATCCAAGCTCAGCCAAACCCAATCCTTCACAGTAATGGAGGACCCAAAAAGGTTGAGTCTTTCATCCCTACAATCCATGAAGCACACCCAAGAATTGGAAACTGCAGTCAGAGCTGTGCAAATGGCTTGTTCACTCTGCCAGAAAGTTCAGGAGAGTTTGATTTCCAAGTCCAGCGCTGTGGTTCAATCCAAAGATGACCACTCTCCAGTCACTGTTGCAGATTGGAGTGTCCAAGCAACTGTGAGCTGGATACTGTCGGAGTCTTTTGGGAGTAGCAATGTGTCCATTGTAGCTGAAGAAGACATTCAAAACCTGTCCAAGGCTAAGGCAGGTGGAGTATTGGAAGCAGTAGTAAAAACTGTAAATGATTGTCTAGCTGAAGCACCTCGTTTTGGACTTCAAGGTCCGAAAAAGGCCCTTGGGACTACAGAGGTTCTTGAAGCCATCAGTCGGTGCAACTCAAGGGGAGGCTCTACTGGGAGATTTTGGGCTCTTGACCCTGTTGATGGAACATTGGGTTTTGTACGAGGGGATCAATATGCTATAGCTCTGGCTCTAATAGAGGATGGAGAAGTTGTGCTTGGAGTTCTTGGATGCCCTAATTACCCAATGAGAAAAGAATGGCTAAACTATCATCACCGGTATCATAGAATTATATCCAAATTGACTCCACCAACATCAGAATCATGGGACAAAGGCTGTGTAATATATGCTAGAAGAGGTAGTGGTGAGGCTTGGATGCAACCCTTGCTCCATGTAAACAAGAACTTTTTGTGGCCAAACTCTGCAAAACCTGTCCGAGTGTCCTCCATCGATAATCCATCATTGGCAACCTTTTGTGAACCTGTTGAGAAGGCAAATTCAAGTCATTCCTTCACAGCAGGACTAGCTCACAGTGTTGGACTTAGGAAGCAACCATTAAGAGTATATAGCATGGTGAAATATGCAGCTATAGCTCGTGGGGATGCCGAGATTTTTATGAAGTTTGCAAGGGCTGGTTACAAAGAGAAGATATGGGATCATGCAGCTGGTGTTGTCATCATACAGGAGGCTGGTGGTGTGGTTTCAGACGCCGGGGGGTGTCCACTGGACTTTTCAAAGGGTATATACTTGGAAGGTCTTGATCGAGGTGTGATAGCTAGTGCCGGAGCAAACCTACATGACAAGATCATCAGGGCTGTTGATGCTAGCTGGGACTCCTCTAGTCTGTAG

Protein Analysis

449

Amino Acids

48.65

Weight (kDa)

9.0

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 112 - 442 1.7e-44 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 455
AasI GACNNNNNNGTC 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 229
AclWI GGATC 2 cut(s) 675, 1161
AcoI YGGCCR 1 cut(s) 911
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 2 cut(s) 450, 534
AcyI GRCGYC 1 cut(s) 1206
AfaI GTAC 1 cut(s) 660
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 5 cut(s) 229, 454, 527, 585, 641
AgeI ACCGGT 1 cut(s) 774
AgsI TTSAA 7 cut(s) 43, 320, 443, 536, 575, 999, 1233
AjuI GAANNNNNNNTTGG 2 cut(s) 699, 731
AlwI GGATC 2 cut(s) 675, 1161
AlwNI CAGNNNCTG 1 cut(s) 347
Aor51HI AGCGCT 1 cut(s) 310
AoxI GGCC 2 cut(s) 549, 911
ApeKI GCWGC 3 cut(s) 129, 1082, 1160
ApoI RAATTY 1 cut(s) 994
AsiGI ACCGGT 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 2 cut(s) 54, 311
AspS9I GGNCC 3 cut(s) 175, 539, 550
AsuC2I CCSGG 1 cut(s) 1210
AsuHPI GGTGA 3 cut(s) 764, 875, 1084
AsuNHI GCTAGC 1 cut(s) 1322
AvaII GGWCC 2 cut(s) 175, 539
BalI TGGCCA 1 cut(s) 913
BanII GRGCYC 1 cut(s) 628
BauI CACGAG 1 cut(s) 1092
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 116, 1094, 1172
BccI CCATC 5 cut(s) 587, 635, 695, 953, 964
BciVI GTATCC 1 cut(s) 378
BcnI CCSGG 1 cut(s) 1210
BfaI CTAG 6 cut(s) 509, 849, 1022, 1275, 1323, 1338
BfmI CTRYAG 5 cut(s) 237, 561, 678, 1086, 1343
BfoI RGCGCY 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 455
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 3 cut(s) 130, 1083, 1161
BlpI GCTNAGC 1 cut(s) 143
BlsI GCNGC 3 cut(s) 131, 1084, 1162
Bme1390I CCNGG 1 cut(s) 1210
Bme18I GGWCC 2 cut(s) 175, 539
BmgT120I GGNCC 3 cut(s) 175, 539, 550
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 1210
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 4 cut(s) 719, 864, 1090, 1309
BmtI GCTAGC 1 cut(s) 1326
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 459
Bpu1102I GCTNAGC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 580
BpuMI CCSGG 1 cut(s) 1210
Bsa29I ATCGAT 1 cut(s) 948
BsaAI YACGTR 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 1206
BsaJI CCNNGG 3 cut(s) 453, 553, 1209
BsaWI WCCGGW 1 cut(s) 774
BsaXI ACNNNNNCTCC 4 cut(s) 696, 726, 870, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 454, 527, 585, 641
Bse118I RCCGGY 1 cut(s) 774
Bse1I ACTGG 3 cut(s) 341, 616, 1227
Bse3DI GCAATG 1 cut(s) 418
BseCI ATCGAT 1 cut(s) 948
BseDI CCNNGG 3 cut(s) 453, 553, 1209
BseGI GGATG 5 cut(s) 197, 706, 734, 879, 1105
BseLI CCNNNNNNNGG 5 cut(s) 229, 454, 527, 585, 641
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 157
BseNI ACTGG 3 cut(s) 341, 616, 1227
BseRI GAGGAG 1 cut(s) 1324
BseXI GCAGC 3 cut(s) 116, 1094, 1172
BseYI CCCAGC 1 cut(s) 1326
BshFI GGCC 2 cut(s) 551, 913
BshTI ACCGGT 1 cut(s) 774
BshVI ATCGAT 1 cut(s) 948
BsiSI CCGG 3 cut(s) 775, 1209, 1281
BslFI GGGAC 3 cut(s) 571, 839, 1343
BslI CCNNNNNNNGG 5 cut(s) 229, 454, 527, 585, 641
BsmFI GGGAC 3 cut(s) 571, 839, 1343
BsnI GGCC 2 cut(s) 551, 913
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 4 cut(s) 667, 1153, 1258, 1302
Bsp1720I GCTNAGC 1 cut(s) 143
BspANI GGCC 2 cut(s) 551, 913
BspCNI CTCAG 1 cut(s) 156
BspDI ATCGAT 1 cut(s) 948
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 455
BspOI GCTAGC 1 cut(s) 1326
BspPI GGATC 2 cut(s) 675, 1161
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 774
BsrI ACTGG 3 cut(s) 341, 616, 1227
BssAI RCCGGY 1 cut(s) 774
BssECI CCNNGG 3 cut(s) 453, 553, 1209
BssMI GATC 4 cut(s) 667, 1153, 1258, 1302
BssNI GRCGYC 1 cut(s) 1206
BssSI CACGAG 1 cut(s) 1092
BssT1I CCWWGG 2 cut(s) 453, 553
Bst2BI CACGAG 1 cut(s) 1092
Bst4CI ACNGT 6 cut(s) 166, 349, 376, 390, 496, 1031
Bst6I CTCTTC 1 cut(s) 847
BstACI GRCGYC 1 cut(s) 1206
BstAPI GCANNNNNTGC 1 cut(s) 883
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 1324
BstDEI CTNAG 3 cut(s) 143, 459, 1040
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 5 cut(s) 197, 706, 734, 879, 1105
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 2 cut(s) 54, 311
BstKTI GATC 4 cut(s) 670, 1156, 1261, 1305
BstMBI GATC 4 cut(s) 667, 1153, 1258, 1302
BstMWI GCNNNNNNNGC 6 cut(s) 11, 245, 883, 1022, 1088, 1319
BstSCI CCNGG 1 cut(s) 1208
BstSFI CTRYAG 5 cut(s) 237, 561, 678, 1086, 1343
BstV1I GCAGC 3 cut(s) 116, 1094, 1172
BstV2I GAAGAC 1 cut(s) 441
BstXI CCANNNNNNTGG 1 cut(s) 313
Bsu15I ATCGAT 1 cut(s) 948
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 2 cut(s) 551, 913
BsuTUI ATCGAT 1 cut(s) 948
BtsCI GGATG 5 cut(s) 197, 706, 734, 879, 1105
BtsIMutI CAGTG 3 cut(s) 345, 1036, 1220
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 1324
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 2 cut(s) 54, 311
Cfr10I RCCGGY 1 cut(s) 774
Cfr13I GGNCC 3 cut(s) 175, 539, 550
ClaI ATCGAT 1 cut(s) 948
CseI GACGC 1 cut(s) 1214
Csp6I GTAC 1 cut(s) 659
CspAI ACCGGT 1 cut(s) 774
CviAII CATG 6 cut(s) 211, 822, 890, 1069, 1157, 1295
CviQI GTAC 1 cut(s) 659
DdeI CTNAG 3 cut(s) 143, 459, 1040
DpnI GATC 4 cut(s) 669, 1155, 1260, 1304
DpnII GATC 4 cut(s) 667, 1153, 1258, 1302
DrdI GACNNNNNNGTC 1 cut(s) 537
DseDI GACNNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 1 cut(s) 847
EarI CTCTTC 1 cut(s) 847
Eco130I CCWWGG 2 cut(s) 453, 553
Eco24I GRGCYC 1 cut(s) 628
Eco47I GGWCC 2 cut(s) 175, 539
Eco47III AGCGCT 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 450, 534
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoO109I RGGNCCY 2 cut(s) 175, 550
EcoT14I CCWWGG 2 cut(s) 453, 553
EcoT38I GRGCYC 1 cut(s) 628
ErhI CCWWGG 2 cut(s) 453, 553
FaeI CATG 6 cut(s) 214, 825, 893, 1072, 1160, 1298
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FaqI GGGAC 3 cut(s) 571, 839, 1343
FatI CATG 6 cut(s) 210, 821, 889, 1068, 1156, 1294
Fnu4HI GCNGC 3 cut(s) 130, 1083, 1161
FokI GGATG 5 cut(s) 184, 713, 741, 886, 1112
FriOI GRGCYC 1 cut(s) 628
Fsp4HI GCNGC 3 cut(s) 130, 1083, 1161
FspBI CTAG 6 cut(s) 509, 849, 1022, 1275, 1323, 1338
GlaI GCGC 2 cut(s) 53, 310
GluI GCNGC 3 cut(s) 130, 1083, 1161
GsaI CCCAGC 1 cut(s) 1330
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 2 cut(s) 551, 913
HapII CCGG 3 cut(s) 775, 1209, 1281
HgaI GACGC 1 cut(s) 1214
HhaI GCGC 2 cut(s) 54, 311
Hin1I GRCGYC 1 cut(s) 1206
Hin1II CATG 6 cut(s) 214, 825, 893, 1072, 1160, 1298
Hin6I GCGC 2 cut(s) 52, 309
HinP1I GCGC 2 cut(s) 52, 309
HinfI GANTC 6 cut(s) 111, 190, 395, 802, 818, 1331
HpaII CCGG 3 cut(s) 775, 1209, 1281
HphI GGTGA 3 cut(s) 764, 875, 1084
Hpy166II GTNNAC 4 cut(s) 266, 895, 977, 1220
Hpy188I TCNGA 6 cut(s) 245, 394, 543, 817, 935, 1204
Hpy188III TCNNGA 5 cut(s) 115, 284, 572, 629, 1256
Hpy8I GTNNAC 4 cut(s) 266, 895, 977, 1220
HpyAV CCTTC 4 cut(s) 169, 982, 1018, 1244
HpyCH4III ACNGT 6 cut(s) 166, 349, 376, 390, 496, 1031
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 9 cut(s) 239, 253, 353, 591, 877, 923, 1082, 1124, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 245, 883, 1022, 1088, 1319
HpyF3I CTNAG 3 cut(s) 143, 459, 1040
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 1206
Hsp92II CATG 6 cut(s) 214, 825, 893, 1072, 1160, 1298
HspAI GCGC 2 cut(s) 52, 309
Kzo9I GATC 4 cut(s) 667, 1153, 1258, 1302
LmnI GCTCC 3 cut(s) 77, 891, 1283
Lsp1109I GCAGC 3 cut(s) 116, 1094, 1172
LweI GCATC 4 cut(s) 719, 864, 1090, 1309
MaeI CTAG 6 cut(s) 509, 849, 1022, 1275, 1323, 1338
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 343, 1133
MalI GATC 4 cut(s) 669, 1155, 1260, 1304
MboI GATC 4 cut(s) 667, 1153, 1258, 1302
MboII GAAGA 4 cut(s) 443, 446, 864, 1156
MhlI GDGCHC 1 cut(s) 628
MlsI TGGCCA 1 cut(s) 913
MluCI AATT 7 cut(s) 22, 38, 227, 736, 786, 797, 994
MluNI TGGCCA 1 cut(s) 913
MlyI GAGTC 4 cut(s) 199, 404, 796, 1325
MmeI TCCRAC 2 cut(s) 372, 1015
Mox20I TGGCCA 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 913
MseI TTAA 1 cut(s) 1055
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 913
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 3 cut(s) 775, 1209, 1281
MspR9I CCNGG 1 cut(s) 1210
MwoI GCNNNNNNNGC 6 cut(s) 11, 245, 883, 1022, 1088, 1319
NciI CCSGG 1 cut(s) 1210
NdeII GATC 4 cut(s) 667, 1153, 1258, 1302
NheI GCTAGC 1 cut(s) 1322
NlaIII CATG 6 cut(s) 214, 825, 893, 1072, 1160, 1298
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 1129
NmuCI GTSAC 1 cut(s) 343
PaqCI CACCTGC 1 cut(s) 455
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 2 cut(s) 111, 818
PflMI CCANNNNNTGG 1 cut(s) 229
PinAI ACCGGT 1 cut(s) 774
PkrI GCNGC 3 cut(s) 131, 1084, 1162
PleI GAGTC 4 cut(s) 198, 403, 796, 1325
PpsI GAGTC 4 cut(s) 198, 403, 796, 1325
Ppu21I YACGTR 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 1326
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 3 cut(s) 175, 539, 550
PspPPI RGGWCCY 1 cut(s) 175
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 1163
RsaI GTAC 1 cut(s) 660
RsaNI GTAC 1 cut(s) 659
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 1055
SatI GCNGC 3 cut(s) 130, 1083, 1161
Sau3AI GATC 4 cut(s) 667, 1153, 1258, 1302
Sau96I GGNCC 3 cut(s) 175, 539, 550
SchI GAGTC 4 cut(s) 199, 404, 796, 1325
ScrFI CCNGG 1 cut(s) 1210
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 4 cut(s) 719, 864, 1090, 1309
SfcI CTRYAG 5 cut(s) 237, 561, 678, 1086, 1343
SinI GGWCC 2 cut(s) 175, 539
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
Sse9I AATT 7 cut(s) 22, 38, 227, 736, 786, 797, 994
SspMI CTAG 6 cut(s) 509, 849, 1022, 1275, 1323, 1338
StyD4I CCNGG 1 cut(s) 1208
StyI CCWWGG 2 cut(s) 453, 553
TaaI ACNGT 6 cut(s) 166, 349, 376, 390, 496, 1031
TaiI ACGT 1 cut(s) 75
TaqI TCGA 3 cut(s) 116, 948, 1261
TasI AATT 7 cut(s) 22, 38, 227, 736, 786, 797, 994
TfiI GAWTC 2 cut(s) 111, 818
Tru1I TTAA 1 cut(s) 1055
Tru9I TTAA 1 cut(s) 1055
TscAI CASTG 3 cut(s) 352, 1036, 1227
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 3 cut(s) 129, 1082, 1160
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 4 cut(s) 49, 186, 227, 1130
TspRI CASTG 3 cut(s) 352, 1036, 1227
Van91I CCANNNNNTGG 1 cut(s) 229
VpaK11BI GGWCC 2 cut(s) 175, 539
XagI CCTNNNNNAGG 1 cut(s) 452
XapI RAATTY 1 cut(s) 994
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 6 cut(s) 509, 849, 1022, 1275, 1323, 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.