AT5G58370

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002736
Physical Location & Seq
Forward (+)
23593059 .. 23596238
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58370.3

Sequence Viewer

Length: 1341 bp
ATGTCTTTAGATACTTCTTTAGGTCTTAAGCTCAAGAAAAGGCTGAAGCTTTCATCGTTTAGCTCCAATTCTTCTTATAAAGGAAAGAGTAGATCCATTACTCAACGCAGTGATGATGACACTAACTCTCGGAAGACTACGGTTTCGTCTATGAAGAAGAAGAGGGTCTACCCCAATAAGGCTAAGCATAATAACCATGTGAATGAAATCCCTCGCACGATGTGGGTTGCTTCAAAGAGAAACCAAGGGTCTACTTCTAGTTTTAAGACCGCTAATGATGCTGCAACTAGTGTGTTTAAAACAAAGTCACGGAGTGGGGTTGATGTTACTCGAAAGAGCTACAGGAAGAGAGATGAATTGGATAGTAATGTAGATGTGAGTCCCAGGGAAAGTTCTGATGTGCCGTCTTTTAAGGCTAGAAAACAGGTGTTTTCAGAGAAGAGAGTTGTGGGAGATGGTTCAGATGTTCAGGAGGATAAACCAAGGAAGAGAAAGAGGATACGACTTGATCCTTATGATACCTCAAATAAAAGAATTGTTGATGATGTCCTTCTTGATGATGGCCTTAGAGTAAAGAACATAAAAGATGCAGTTAAAAGTGTAGAAATGTCGAAAAATGCACAGTTTCGTGCAATTCAGCCTAGTCATTCGATCCTCTCCTATGTGGAAGAAAATCTGTTGGGGCGTAGACGTTTAATTGAGCTAAAGAGGGCCGGCTATAACACAGAGCTTCCTGCTCCATTAGATAATATTCCTCAGTCAACCAGCACAGAGAGAGAACGTATAGAAGAAAGTGTATTTAGGAATAAATTGGAATTCTTTGCTGCTGCAAATGTTTCATCTTCATTTCCACCTCCTGATGTACCTGAGATTGCATTTGCAGGAAGGTCAAATGTTGGCAAATCGTCTCTGCTAAATGCTCTTACCAGACAGTGGGGTGTTGTAAGAACATCTGACAAACCAGGACTGACCCAGACCATCAATTTCTTTGGTCTTGGTCCGAAGGTTCGCCTTGTTGATTTGCCAGGCTACGGCTTTGCCTTTGCAAAAGATGAAGTTAAGGAAGCATGGGAAGATCTTGTAAAGGAATATGTCTCGACAAGAACCAGTCTTAAACGGGTATGCCTCCTTGTTGACACCAAATGGGGTATGAAGCCAAGAGACCAGGAACTGATTAATCTGATGGAGAGATCGAATACAAAGTATCAGATAGTCTTAACCAAGACGGATGTGGTTTTCCCAATTGATGTGGCACGTCGAGCAATGCAAATCGAAGAGAAGTTGAAGGCAAACAGATCAATTGTCCAGCCTCTGTGGTTAACGTTAAATGATTGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

446

Amino Acids

50.64

Weight (kDa)

9.98

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 290 - 408 1.4e-20 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 933
AccI GTMKAC 3 cut(s) 168, 251, 688
AciI CCGC 1 cut(s) 270
AclI AACGTT 1 cut(s) 1322
AclWI GGATC 3 cut(s) 87, 503, 646
AcsI RAATTY 1 cut(s) 815
AcuI CTGAAG 1 cut(s) 65
AdeI CACNNNGTG 2 cut(s) 222, 314
AfaI GTAC 1 cut(s) 864
AfiI CCNNNNNNNGG 3 cut(s) 178, 933, 1031
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 234, 1285
AhlI ACTAGT 1 cut(s) 287
AjiI CACGTC 1 cut(s) 1256
AjnI CCWGG 4 cut(s) 383, 961, 1024, 1164
AluBI AGCT 6 cut(s) 31, 49, 63, 339, 703, 730
AluI AGCT 6 cut(s) 31, 49, 63, 339, 703, 730
Alw26I GTCTC 3 cut(s) 912, 1099, 1155
AlwI GGATC 3 cut(s) 87, 503, 646
AlwNI CAGNNNCTG 2 cut(s) 1171, 1312
AoxI GGCC 2 cut(s) 562, 711
ApeKI GCWGC 3 cut(s) 281, 824, 827
ApoI RAATTY 1 cut(s) 815
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AseI ATTAAT 1 cut(s) 1176
AspS9I GGNCC 2 cut(s) 711, 998
AvaII GGWCC 1 cut(s) 998
BarI GAAGNNNNNNTAC 2 cut(s) 152, 184
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 3 cut(s) 268, 811, 814
BccI CCATC 4 cut(s) 449, 554, 986, 1177
BceAI ACGGC 2 cut(s) 388, 1048
BciT130I CCWGG 4 cut(s) 385, 963, 1026, 1166
BciVI GTATCC 1 cut(s) 492
BcoDI GTCTC 3 cut(s) 912, 1099, 1155
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 4 cut(s) 258, 288, 417, 642
BfmI CTRYAG 1 cut(s) 340
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 492
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 3 cut(s) 282, 825, 828
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 3 cut(s) 283, 826, 829
Bme1390I CCNGG 4 cut(s) 385, 963, 1026, 1166
Bme18I GGWCC 1 cut(s) 998
BmgBI CACGTC 1 cut(s) 1256
BmgT120I GGNCC 2 cut(s) 711, 998
BmrFI CCNGG 4 cut(s) 385, 963, 1026, 1166
BmsI GCATC 2 cut(s) 268, 577
BpiI GAAGAC 1 cut(s) 140
Bpu1102I GCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 1155
BsaJI CCNNGG 4 cut(s) 244, 383, 384, 482
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 933, 1031
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 1 cut(s) 1107
Bse3DI GCAATG 1 cut(s) 1269
BseBI CCWGG 4 cut(s) 385, 963, 1026, 1166
BseDI CCNNGG 4 cut(s) 244, 383, 384, 482
BseGI GGATG 1 cut(s) 1234
BseLI CCNNNNNNNGG 3 cut(s) 178, 933, 1031
BseMI GCAATG 1 cut(s) 1269
BseMII CTCAG 2 cut(s) 770, 858
BseNI ACTGG 1 cut(s) 1107
BseXI GCAGC 3 cut(s) 268, 811, 814
BshFI GGCC 2 cut(s) 564, 713
BsiSI CCGG 1 cut(s) 714
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 3 cut(s) 178, 933, 1031
BsmAI GTCTC 3 cut(s) 912, 1099, 1155
BsmBI CGTCTC 1 cut(s) 912
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 2 cut(s) 564, 713
Bso31I GGTCTC 1 cut(s) 1155
Bsp143I GATC 6 cut(s) 92, 508, 651, 1075, 1190, 1295
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 1 cut(s) 270
BspANI GGCC 2 cut(s) 564, 713
BspCNI CTCAG 2 cut(s) 769, 859
BspPI GGATC 3 cut(s) 87, 503, 646
BspTI CTTAAG 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 1155
BsrDI GCAATG 1 cut(s) 1269
BsrFI RCCGGY 1 cut(s) 713
BsrI ACTGG 1 cut(s) 1107
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 4 cut(s) 244, 383, 384, 482
BssMI GATC 6 cut(s) 92, 508, 651, 1075, 1190, 1295
BssT1I CCWWGG 2 cut(s) 244, 482
Bst2UI CCWGG 4 cut(s) 385, 963, 1026, 1166
Bst4CI ACNGT 3 cut(s) 142, 624, 933
Bst6I CTCTTC 5 cut(s) 155, 341, 434, 482, 1269
BstAFI CTTAAG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 4 cut(s) 183, 566, 756, 867
BstF5I GGATG 1 cut(s) 1234
BstKTI GATC 6 cut(s) 95, 511, 654, 1078, 1193, 1298
BstMAI GTCTC 3 cut(s) 912, 1099, 1155
BstMBI GATC 6 cut(s) 92, 508, 651, 1075, 1190, 1295
BstMWI GCNNNNNNNGC 2 cut(s) 278, 1259
BstNI CCWGG 4 cut(s) 385, 963, 1026, 1166
BstSCI CCNGG 4 cut(s) 383, 961, 1024, 1164
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 268, 811, 814
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 2 cut(s) 92, 1075
BstYI RGATCY 2 cut(s) 92, 1075
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 2 cut(s) 564, 713
BtrI CACGTC 1 cut(s) 1256
BtsCI GGATG 1 cut(s) 1234
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 115, 938
Cac8I GCNNGC 1 cut(s) 715
CaiI CAGNNNCTG 2 cut(s) 1171, 1312
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 2 cut(s) 711, 998
Csp6I GTAC 1 cut(s) 863
CspCI CAANNNNNGTGG 2 cut(s) 1230, 1265
CviAII CATG 2 cut(s) 197, 1068
CviQI GTAC 1 cut(s) 863
DdeI CTNAG 4 cut(s) 183, 566, 756, 867
DpnI GATC 6 cut(s) 94, 510, 653, 1077, 1192, 1297
DpnII GATC 6 cut(s) 92, 508, 651, 1075, 1190, 1295
DraI TTTAAA 1 cut(s) 298
DraIII CACNNNGTG 2 cut(s) 222, 314
Eam1104I CTCTTC 5 cut(s) 155, 341, 434, 482, 1269
EarI CTCTTC 5 cut(s) 155, 341, 434, 482, 1269
Eco130I CCWWGG 2 cut(s) 244, 482
Eco31I GGTCTC 1 cut(s) 1155
Eco47I GGWCC 1 cut(s) 998
Eco57I CTGAAG 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 815
EcoRII CCWGG 4 cut(s) 383, 961, 1024, 1164
EcoT14I CCWWGG 2 cut(s) 244, 482
ErhI CCWWGG 2 cut(s) 244, 482
Esp3I CGTCTC 1 cut(s) 912
FaeI CATG 2 cut(s) 200, 1071
FaqI GGGAC 1 cut(s) 366
FatI CATG 2 cut(s) 196, 1067
FblI GTMKAC 3 cut(s) 168, 251, 688
Fnu4HI GCNGC 3 cut(s) 282, 825, 828
FokI GGATG 1 cut(s) 1241
Fsp4HI GCNGC 3 cut(s) 282, 825, 828
FspBI CTAG 4 cut(s) 258, 288, 417, 642
GluI GCNGC 3 cut(s) 282, 825, 828
HaeIII GGCC 2 cut(s) 564, 713
HapII CCGG 1 cut(s) 714
Hin1II CATG 2 cut(s) 200, 1071
HincII GTYRAC 3 cut(s) 762, 1135, 1320
HindII GTYRAC 3 cut(s) 762, 1135, 1320
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 379
HpaI GTTAAC 1 cut(s) 1320
HpaII CCGG 1 cut(s) 714
Hpy166II GTNNAC 6 cut(s) 169, 252, 689, 762, 1135, 1320
Hpy188I TCNGA 8 cut(s) 132, 397, 436, 463, 955, 1002, 1182, 1209
Hpy188III TCNNGA 5 cut(s) 34, 470, 554, 857, 1096
Hpy8I GTNNAC 6 cut(s) 169, 252, 689, 762, 1135, 1320
Hpy99I CGWCG 1 cut(s) 1260
HpyAV CCTTC 4 cut(s) 560, 879, 997, 1279
HpyCH4III ACNGT 3 cut(s) 142, 624, 933
HpyCH4IV ACGT 4 cut(s) 691, 781, 1255, 1322
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 1259
HpyF3I CTNAG 4 cut(s) 183, 566, 756, 867
HpySE526I ACGT 4 cut(s) 691, 781, 1255, 1322
Hsp92II CATG 2 cut(s) 200, 1071
KroI GCCGGC 1 cut(s) 713
KroNI GCCGGC 1 cut(s) 715
KspAI GTTAAC 1 cut(s) 1320
Kzo9I GATC 6 cut(s) 92, 508, 651, 1075, 1190, 1295
LmnI GCTCC 2 cut(s) 68, 742
Lsp1109I GCAGC 3 cut(s) 268, 811, 814
LweI GCATC 2 cut(s) 268, 577
MaeI CTAG 4 cut(s) 258, 288, 417, 642
MaeII ACGT 4 cut(s) 691, 781, 1255, 1322
MaeIII GTNAC 2 cut(s) 306, 325
MalI GATC 6 cut(s) 94, 510, 653, 1077, 1192, 1297
MboI GATC 6 cut(s) 92, 508, 651, 1075, 1190, 1295
MfeI CAATTG 2 cut(s) 1242, 1299
MflI RGATCY 2 cut(s) 92, 1075
MlyI GAGTC 1 cut(s) 388
MroNI GCCGGC 1 cut(s) 713
MslI CAYNNNNRTG 1 cut(s) 201
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 1 cut(s) 714
MspR9I CCNGG 4 cut(s) 385, 963, 1026, 1166
MunI CAATTG 2 cut(s) 1242, 1299
MvaI CCWGG 4 cut(s) 385, 963, 1026, 1166
MwoI GCNNNNNNNGC 2 cut(s) 278, 1259
NaeI GCCGGC 1 cut(s) 715
NdeII GATC 6 cut(s) 92, 508, 651, 1075, 1190, 1295
NgoMIV GCCGGC 1 cut(s) 713
NlaIII CATG 2 cut(s) 200, 1071
NmuCI GTSAC 1 cut(s) 306
PasI CCCWGGG 1 cut(s) 384
PdiI GCCGGC 1 cut(s) 715
PflMI CCANNNNNTGG 1 cut(s) 933
PkrI GCNGC 3 cut(s) 283, 826, 829
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PshBI ATTAAT 1 cut(s) 1176
PsiI TTATAA 1 cut(s) 78
Psp1406I AACGTT 1 cut(s) 1322
Psp6I CCWGG 4 cut(s) 383, 961, 1024, 1164
PspGI CCWGG 4 cut(s) 383, 961, 1024, 1164
PspPI GGNCC 2 cut(s) 711, 998
PstNI CAGNNNCTG 2 cut(s) 1171, 1312
PsuI RGATCY 2 cut(s) 92, 1075
RsaI GTAC 1 cut(s) 864
RsaNI GTAC 1 cut(s) 863
RseI CAYNNNNRTG 1 cut(s) 201
SatI GCNGC 3 cut(s) 282, 825, 828
Sau3AI GATC 6 cut(s) 92, 508, 651, 1075, 1190, 1295
Sau96I GGNCC 2 cut(s) 711, 998
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 4 cut(s) 385, 963, 1026, 1166
SfaNI GCATC 2 cut(s) 268, 577
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 1 cut(s) 998
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 26, 32
SmoI CTYRAG 2 cut(s) 26, 32
SpeI ACTAGT 1 cut(s) 287
SsiI CCGC 1 cut(s) 270
SspI AATATT 1 cut(s) 751
SspMI CTAG 4 cut(s) 258, 288, 417, 642
StyD4I CCNGG 4 cut(s) 383, 961, 1024, 1164
StyI CCWWGG 2 cut(s) 244, 482
TaaI ACNGT 3 cut(s) 142, 624, 933
TaiI ACGT 4 cut(s) 694, 784, 1258, 1325
TaqI TCGA 7 cut(s) 331, 611, 650, 1097, 1193, 1258, 1272
TscAI CASTG 2 cut(s) 115, 938
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 3 cut(s) 281, 824, 827
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 8 cut(s) 42, 167, 219, 369, 828, 834, 1068, 1166
TspGWI ACGGA 2 cut(s) 325, 1241
TspRI CASTG 2 cut(s) 115, 938
Van91I CCANNNNNTGG 1 cut(s) 933
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 998
VspI ATTAAT 1 cut(s) 1176
XapI RAATTY 1 cut(s) 815
XcmI CCANNNNNNNNNTGG 1 cut(s) 1228
XmiI GTMKAC 3 cut(s) 168, 251, 688
XspI CTAG 4 cut(s) 258, 288, 417, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.