Rw5G044910

Ferrous iron transport protein B

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002736
Physical Location & Seq
Forward (+)
78656366 .. 78660929
4564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044910.1

Sequence Viewer

Length: 1866 bp
ATGTCTGCAGAGGAAAAATTAAGGTTTAAGTTCAATAAGAAACTCAAAATAGCAGTTGGAAATTCTAAGTTTTCAAATAGTGGGAGAAAGAAGGCTGAAGATAATGTCAATGAGAGTGAGAATGGTAAGAGAGAGAACTATAAATCGAGTGTAAGAGATAAGAAGTTTCATACTGCTGAAGAGGGGAGTCAGGGAGTTTTTGATAGAAGGAAGAGAATCTATGTTGATCGAGATGCAGCTTGGGAGGCTAACAGTAATGAGGAGGCACCTTATAGGAAGGTTTTATCTAAAAAAGGACAGAATCAATTGAAGTATGGTTATATTAATGAGAAGAACTACAGTAGATCTCCTTCACGTCCTCGTTACAAGTGGGGTTCTAATGAGAGTGCTTCTGAAACTAAACGGTTTTCTCCCAAGGAGAGAAGTGCAAAAGTTTATAATAACTTCGGCAATGAAAAGAATAATAGTAGATTTCCTACTTGTCCCCGTTCGAAGTGGGATTCTGATGGATTAGAGAATGCTTCTGAAACTAAACGTTTTTCTCCCAAGGTTAGAAGTGCAAAAGTTTACAATGAAACAAAAGGTAGGGACGCTGATAATTTTGGTAATGAAAAGAGTAGCAGCAGATCTCCTTCGCGTCCTCGCTCTACATGGGGTTCTGATATCACTGCTTCTGAAACTAAACGTTTTTCTCCTAAGGTTAGAAGTGAGAAACGTTCCAATAAAACCAAAGTTAAGGATGTTGATAAGATGGAATCTATTACAACTGATGGTGGACGGAGTGCTTCACTGAAGAAACATAACCAAATAAAACCAGCCTTGCAAAAATTCCCAAATATATCTCTTCCAAATACTGTGAAGAAAAAAGCATGGGAAAAGAATATCTCGGATGAAGGATCAGATGTGCTAGATGGTCAGCGAAAGAAGAAGCGAATGCGACCAGATCCATATGACATTTCAAATAAACGACTTGATGATAGTATTGCTAAAATTGAAAACTTAAAGGAGAAGGAAAAAGATGTTGAGGAAAAAGCTGAGATATCAAAGAATGCACAATTTCGTGCAATCCAACCAAGTCCATCAATCCTTTCCTATGTCGAAGATAATTTGTTGGGTCGTAGACGCTTGATTGAGCTGAGGAGGGCAGGGTACAACACTGAGCTTTCTGCACCATTGGATGATACTCCTTTCTCTACCAGCTCAGAAAGAGAGCGGATTGAGGAAAATATATTTAGGAGTAAATTGACATTTTTTGCTGCTGCAAAAGTTTCATCATCATTTCCACCTCCTGATCTTCCGGAGATTGCATTTGCAGGAAGGTCAAATGTTGGGAAATCATCACTACTTAATGCACTTACCAGAAATTGGGGTGTTGCACGAACATCAGATAAGCCTGGTCTTACTCAGAGTATTAATTTCTTCAATCTTGGATCAAAGCTCTGTTTGGTTGATTTGCCTGGATATGGCTTTGCTTATGCCAAAGAAGAGATTAAGGATGCTTGGGAGGAGCTTGTGAAGGAGTATGTTTCCACAAGAGTTGGTCTAAAACGAGTGTGCTTACTTATTGATACCAAATGGGGAATGAAGCCTAGGGATCGTGAACTCATTGACCTGATGGAAAGATCTCAAACCAAGTATCAGATCTTATTAACGAAATCGGATGCGGTTTTCCCGATTGATGTAGCACGCCGTGCAATGCAAATTGAAGAGAGCCTCAAGGCAAATAAGTCTCTGGTCCAACCTGTGGTATCATTTTCATATTCCTCTCATTGGTTTCTACTAAATTTCTTTCATCAGTTAAATCATCAAGAATCAAGTTGTACTCGCGAGGGTAATTTGTATGATAAGCAACATGAACATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

621

Amino Acids

71.16

Weight (kDa)

9.72

Isoelectric Point (pI)

57.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MMR_HSR1 PF01926 434 - 552 1.6e-19 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 2 cut(s) 1365, 1744
AccBSI CCGCTC 1 cut(s) 1213
AccI GTMKAC 1 cut(s) 1120
AccII CGCG 2 cut(s) 637, 1827
AccIII TCCGGA 1 cut(s) 1297
AciI CCGC 2 cut(s) 1213, 1664
AclI AACGTT 3 cut(s) 535, 685, 715
AclWI GGATC 4 cut(s) 904, 938, 1438, 1602
AcsI RAATTY 3 cut(s) 61, 827, 1783
AcuI CTGAAG 3 cut(s) 117, 198, 812
AdeI CACNNNGTG 1 cut(s) 1691
AfaI GTAC 2 cut(s) 1151, 1822
AfiI CCNNNNNNNGG 4 cut(s) 1365, 1463, 1744, 1770
AgsI TTSAA 7 cut(s) 34, 75, 310, 960, 995, 1423, 1706
AjiI CACGTC 1 cut(s) 356
AjnI CCWGG 2 cut(s) 1393, 1456
AluBI AGCT 7 cut(s) 239, 1034, 1135, 1162, 1200, 1438, 1510
AluI AGCT 7 cut(s) 239, 1034, 1135, 1162, 1200, 1438, 1510
Alw26I GTCTC 1 cut(s) 1734
AlwI GGATC 4 cut(s) 904, 938, 1438, 1602
Aor13HI TCCGGA 1 cut(s) 1297
ApeKI GCWGC 4 cut(s) 236, 621, 1256, 1259
ApoI RAATTY 3 cut(s) 61, 827, 1783
AseI ATTAAT 2 cut(s) 324, 1413
AspA2I CCTAGG 1 cut(s) 1589
AspS9I GGNCC 1 cut(s) 1735
AsuII TTCGAA 1 cut(s) 491
AvaII GGWCC 1 cut(s) 1735
AvrII CCTAGG 1 cut(s) 1589
AxyI CCTNAGG 1 cut(s) 696
BanI GGYRCC 1 cut(s) 265
BarI GAAGNNNNNNTAC 2 cut(s) 334, 366
BbvCI CCTCAGC 1 cut(s) 1136
BbvI GCAGC 4 cut(s) 248, 633, 1243, 1246
BccI CCATC 6 cut(s) 500, 745, 764, 905, 1087, 1609
BceAI ACGGC 1 cut(s) 1674
BciT130I CCWGG 2 cut(s) 1395, 1458
BcoDI GTCTC 1 cut(s) 1734
BfaI CTAG 2 cut(s) 908, 1590
BfmI CTRYAG 2 cut(s) 6, 337
BglII AGATCT 4 cut(s) 344, 626, 1622, 1641
BisI GCNGC 4 cut(s) 237, 622, 1257, 1260
BlnI CCTAGG 1 cut(s) 1589
BlsI GCNGC 4 cut(s) 238, 623, 1258, 1261
Bme1390I CCNGG 2 cut(s) 1395, 1458
Bme18I GGWCC 1 cut(s) 1735
BmgBI CACGTC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 1735
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 1395, 1458
BmsI GCATC 3 cut(s) 223, 1486, 1651
Bpu10I CCTNAGC 1 cut(s) 1136
Bpu14I TTCGAA 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 1700
BsaJI CCNNGG 3 cut(s) 414, 546, 1589
BsaWI WCCGGW 1 cut(s) 1297
Bsc4I CCNNNNNNNGG 4 cut(s) 1365, 1463, 1744, 1770
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 2 cut(s) 457, 1701
BseAI TCCGGA 1 cut(s) 1297
BseBI CCWGG 2 cut(s) 1395, 1458
BseDI CCNNGG 3 cut(s) 414, 546, 1589
BseGI GGATG 5 cut(s) 745, 895, 1183, 1501, 1666
BseLI CCNNNNNNNGG 4 cut(s) 1365, 1463, 1744, 1770
BseMI GCAATG 2 cut(s) 457, 1701
BseMII CTCAG 5 cut(s) 1026, 1127, 1149, 1215, 1418
BseRI GAGGAG 3 cut(s) 275, 1153, 1520
BseXI GCAGC 4 cut(s) 248, 633, 1243, 1246
BsgI GTGCAG 1 cut(s) 1152
Bsh1236I CGCG 2 cut(s) 637, 1827
BshNI GGYRCC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 1298
BslFI GGGAC 2 cut(s) 468, 602
BslI CCNNNNNNNGG 4 cut(s) 1365, 1463, 1744, 1770
BsmAI GTCTC 1 cut(s) 1734
BsmFI GGGAC 2 cut(s) 468, 602
BsmI GAATGC 3 cut(s) 523, 939, 1054
Bsp119I TTCGAA 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 1297
Bsp68I TCGCGA 1 cut(s) 1827
BspACI CCGC 2 cut(s) 1213, 1664
BspCNI CTCAG 5 cut(s) 1027, 1128, 1150, 1214, 1417
BspEI TCCGGA 1 cut(s) 1297
BspFNI CGCG 2 cut(s) 637, 1827
BspLI GGNNCC 1 cut(s) 267
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 4 cut(s) 904, 938, 1438, 1602
BspT104I TTCGAA 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 1213
BsrDI GCAATG 2 cut(s) 457, 1701
BssECI CCNNGG 3 cut(s) 414, 546, 1589
BssT1I CCWWGG 3 cut(s) 414, 546, 1589
Bst2UI CCWGG 2 cut(s) 1395, 1458
Bst4CI ACNGT 4 cut(s) 254, 341, 405, 856
Bst6I CTCTTC 5 cut(s) 174, 206, 849, 1479, 1701
BstAPI GCANNNNNTGC 1 cut(s) 1691
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 1687
BstDEI CTNAG 7 cut(s) 66, 696, 1035, 1136, 1158, 1201, 1404
BstF5I GGATG 5 cut(s) 745, 895, 1183, 1501, 1666
BstFNI CGCG 2 cut(s) 637, 1827
BstMAI GTCTC 1 cut(s) 1734
BstMWI GCNNNNNNNGC 2 cut(s) 245, 1691
BstNI CCWGG 2 cut(s) 1395, 1458
BstSCI CCNGG 2 cut(s) 1393, 1456
BstSFI CTRYAG 2 cut(s) 6, 337
BstUI CGCG 2 cut(s) 637, 1827
BstV1I GCAGC 4 cut(s) 248, 633, 1243, 1246
BstX2I RGATCY 5 cut(s) 344, 626, 943, 1622, 1641
BstYI RGATCY 5 cut(s) 344, 626, 943, 1622, 1641
Bsu36I CCTNAGG 1 cut(s) 696
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 5 cut(s) 745, 895, 1183, 1501, 1666
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 3 cut(s) 666, 788, 1155
BtuMI TCGCGA 1 cut(s) 1827
Cac8I GCNNGC 1 cut(s) 1687
Cfr13I GGNCC 1 cut(s) 1735
CseI GACGC 3 cut(s) 599, 626, 1131
Csp6I GTAC 2 cut(s) 1150, 1821
CspCI CAANNNNNGTGG 2 cut(s) 1519, 1554
CviAII CATG 3 cut(s) 651, 870, 1853
CviQI GTAC 2 cut(s) 1150, 1821
DdeI CTNAG 7 cut(s) 66, 696, 1035, 1136, 1158, 1201, 1404
DraIII CACNNNGTG 1 cut(s) 1691
Eam1104I CTCTTC 5 cut(s) 174, 206, 849, 1479, 1701
EarI CTCTTC 5 cut(s) 174, 206, 849, 1479, 1701
Eco130I CCWWGG 3 cut(s) 414, 546, 1589
Eco32I GATATC 2 cut(s) 664, 1041
Eco47I GGWCC 1 cut(s) 1735
Eco57I CTGAAG 3 cut(s) 117, 198, 812
Eco81I CCTNAGG 1 cut(s) 696
EcoRII CCWGG 2 cut(s) 1393, 1456
EcoRV GATATC 2 cut(s) 664, 1041
EcoT14I CCWWGG 3 cut(s) 414, 546, 1589
ErhI CCWWGG 3 cut(s) 414, 546, 1589
FaeI CATG 3 cut(s) 654, 873, 1856
FaqI GGGAC 2 cut(s) 468, 602
FatI CATG 3 cut(s) 650, 869, 1852
FauNDI CATATG 1 cut(s) 949
FblI GTMKAC 1 cut(s) 1120
Fnu4HI GCNGC 4 cut(s) 237, 622, 1257, 1260
FokI GGATG 5 cut(s) 752, 902, 1190, 1508, 1673
Fsp4HI GCNGC 4 cut(s) 237, 622, 1257, 1260
FspBI CTAG 2 cut(s) 908, 1590
GluI GCNGC 4 cut(s) 237, 622, 1257, 1260
HapII CCGG 1 cut(s) 1298
HgaI GACGC 3 cut(s) 599, 626, 1131
Hin1II CATG 3 cut(s) 654, 873, 1856
HinfI GANTC 6 cut(s) 187, 216, 301, 500, 755, 1811
HpaII CCGG 1 cut(s) 1298
Hpy166II GTNNAC 4 cut(s) 568, 776, 1121, 1601
Hpy188III TCNNGA 7 cut(s) 230, 1289, 1298, 1598, 1672, 1808, 1826
Hpy8I GTNNAC 4 cut(s) 568, 776, 1121, 1601
HpyAV CCTTC 9 cut(s) 85, 201, 271, 360, 642, 887, 1003, 1311, 1510
HpyCH4III ACNGT 4 cut(s) 254, 341, 405, 856
HpyCH4IV ACGT 4 cut(s) 355, 535, 685, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 1691
HpyF3I CTNAG 7 cut(s) 66, 696, 1035, 1136, 1158, 1201, 1404
HpySE526I ACGT 4 cut(s) 355, 535, 685, 715
Hsp92II CATG 3 cut(s) 654, 873, 1856
Kpn2I TCCGGA 1 cut(s) 1297
LmnI GCTCC 1 cut(s) 1507
Lsp1109I GCAGC 4 cut(s) 248, 633, 1243, 1246
LweI GCATC 3 cut(s) 223, 1486, 1651
MaeI CTAG 2 cut(s) 908, 1590
MaeII ACGT 4 cut(s) 355, 535, 685, 715
MaeIII GTNAC 1 cut(s) 362
MbiI CCGCTC 1 cut(s) 1213
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 5 cut(s) 344, 626, 943, 1622, 1641
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 3 cut(s) 37, 1093, 1762
MroI TCCGGA 1 cut(s) 1297
MspI CCGG 1 cut(s) 1298
MspR9I CCNGG 2 cut(s) 1395, 1458
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 3 cut(s) 523, 939, 1054
MvaI CCWGG 2 cut(s) 1395, 1458
MvnI CGCG 2 cut(s) 637, 1827
MwoI GCNNNNNNNGC 2 cut(s) 245, 1691
NdeI CATATG 1 cut(s) 949
NlaIII CATG 3 cut(s) 654, 873, 1856
NlaIV GGNNCC 1 cut(s) 267
NruI TCGCGA 1 cut(s) 1827
NspV TTCGAA 1 cut(s) 491
PctI GAATGC 3 cut(s) 523, 939, 1054
PfeI GAWTC 5 cut(s) 216, 301, 500, 755, 1811
PflMI CCANNNNNTGG 2 cut(s) 1365, 1744
PkrI GCNGC 4 cut(s) 238, 623, 1258, 1261
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PshBI ATTAAT 2 cut(s) 324, 1413
PsiI TTATAA 1 cut(s) 438
Psp1406I AACGTT 3 cut(s) 535, 685, 715
Psp6I CCWGG 2 cut(s) 1393, 1456
PspGI CCWGG 2 cut(s) 1393, 1456
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 1735
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 5 cut(s) 344, 626, 943, 1622, 1641
RruI TCGCGA 1 cut(s) 1827
RsaI GTAC 2 cut(s) 1151, 1822
RsaNI GTAC 2 cut(s) 1150, 1821
SatI GCNGC 4 cut(s) 237, 622, 1257, 1260
Sau96I GGNCC 1 cut(s) 1735
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 1395, 1458
SfaNI GCATC 3 cut(s) 223, 1486, 1651
SfcI CTRYAG 2 cut(s) 6, 337
SfuI TTCGAA 1 cut(s) 491
SinI GGWCC 1 cut(s) 1735
SmlI CTYRAG 1 cut(s) 1715
SmoI CTYRAG 1 cut(s) 1715
SsiI CCGC 2 cut(s) 1213, 1664
SspMI CTAG 2 cut(s) 908, 1590
StyD4I CCNGG 2 cut(s) 1393, 1456
StyI CCWWGG 3 cut(s) 414, 546, 1589
TaaI ACNGT 4 cut(s) 254, 341, 405, 856
TaiI ACGT 4 cut(s) 358, 538, 688, 718
TaqI TCGA 4 cut(s) 146, 229, 491, 1098
TatI WGTACW 1 cut(s) 1820
TfiI GAWTC 5 cut(s) 216, 301, 500, 755, 1811
TscAI CASTG 3 cut(s) 673, 795, 1162
TseI GCWGC 4 cut(s) 236, 621, 1256, 1259
TspDTI ATGAA 9 cut(s) 158, 468, 588, 624, 906, 1260, 1598, 1746, 1781
TspGWI ACGGA 1 cut(s) 793
TspRI CASTG 3 cut(s) 673, 795, 1162
Van91I CCANNNNNTGG 2 cut(s) 1365, 1744
VpaK11BI GGWCC 1 cut(s) 1735
VspI ATTAAT 2 cut(s) 324, 1413
XapI RAATTY 3 cut(s) 61, 827, 1783
XmaJI CCTAGG 1 cut(s) 1589
XmiI GTMKAC 1 cut(s) 1120
XspI CTAG 2 cut(s) 908, 1590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.