Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002736

Physical Location & Seq

Genomic Coordinates Reverse (-)

78699226 .. 78705973

Gene Structure 6748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036304

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGTCTGCAGATGAAAAATTAAGGTTTCAGTTTAATAAGAAACTCAAAATAACAGTTGGAAATTCCAAGTTTTCAAATAGTGGAAGAAAGAAGGCTGAAAATAATGTCAATGAGAGTCAGAATGGTAAGAGAGAGAACCATAAATCAAGTGTAAGAGATAAGAAGTTTCATTCTGCTGAAGAACGGAGGCGGGGAGTTTTTGATAGAAGGAAGAGTATCTATGTTGATCCAGATGCAGCTTGGGAGGCTAACAGTAATGAGGAGGCACCTTATAGGAAGGTTTTATCTAAAAAAGGACAGAATCAATTGAATGCTTCTGAGACTAAACGGTTTTCTCCCACAGAGAGAAGTGCAAAAGTTTATAATAACTTCGGCAATGAAAAGAATAATAGTAGGTTTCCTTCTCGTCCCCGTTCTAAGTGGGGTTCTGATGGATTAGAGAATGCTTCTGGAACTAAACGTTTTTCTCCCAACGTTAGAAGTGCAAAAGTTTACAATGAAACAAAATTTAAGGAGGCTGATAATTTTGGTAATGAAAAGAGTAGCAGTAAATCTCCTTCGTGTCCTCGCTTTACATGGGGTTCTGATAACATTGCTTCTGAAACTAAACGTTTTTCTCCTAAGGTTAGAAGTGAGAAACGTTCCAATAAAACCAAAGTTAAGGATGATGATAAGATGGAATCCATTACAACTGATGATGGCCGGAGTGCTTCACTGAAGAAACATAACCAAATAAAACCAGACTTGCAAAAATCCCCAACTATATCTCTTCCAAATACTGTGAAGAAAAAAGCACAGAACAAGAATATCTCGGATGAAGTATCAGAGGTGCTAGATGGTCAGCTAAAGAAGAAGAAGCGAATGCGACTAGATCCATATGACATTTCAAATAAACGTCTTGATGAAAGTATTGCTACAAATGAAAACTTAAAAGGAAAGGAAAACGATGTTGAGGAAAACACTGAGATATCAAAGAATGCACAATTTCGTGCAATCCAACCAACTCCGTCAATCCTCTCCTATGTCGAAGATAATTTGTTGGGTCGTAGACGCTTGATTGAGCTGAGGAGGGCAGGCTACAACACTGAGCTCTCTGCACCATTGGATAATTCTCCTTTCTCTGTCAGCTCCAAAAGAGAGCGAATTGAGGAAAATCTATGTAATGCAAGTCTAGATAAACATAAACATCCTCATATATTTAGGAGTAAATTGACATTTTTTGCTGCTGCAAAAGTTTCATCATCATTTCCTCCTCTTGATCTTCCAGAGAATGCATTTATCGCCTTCTTCTTCAGCTCGTCGCTGGTGACCTCCTTCAATTCGTGGATTCTCGCAGCCTTCCTCTGCACCTTCTTCTCCAGCTCGTCGCTGGTGACCTCCTTCAATTCATGGATTCTCGTCACTGAAAGATGCTGGTGGATCCTCCTTATGTGGCCAGTGGTGCTGAAACTGCAGACCATACGGATGCGCCTAATGTTGCTCAAGCAACAGCAACAGGGTAGATACTTAGATTACTCAAAGATAGACAACGACGAGACATTGGATGATCACTGGCAGAGAGAAGCCAACCATGTCGCTGAAGAGAAGTACTTTGATGACATTATTGATGAGGACAAGACATTGGATGATCACCGGCAGATAGAAGTGAACCAAGACGCTCAAGAGAAGTACTTTGATGAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

562

Amino Acids

64.76

Weight (kDa)

9.4

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58370 AT5G58370 AT5G58370
fragaria_vesca	FvH4_3g40250 FvH4_3g40250
malus_domestica	MD03G1054800.v1.1
prunus_persica	Prupe.6G043400_v2.0.a1
pyrus_communis	pycom03g04350
rosa_chinensis	RchiOBHm_Chr5g0072471 RchiOBHm_Chr5g0072511 RchiOBHm_Chr5g0073721
rosa_laevigata	RLG00000036302 RLG00000036304 RLG00000036308
rosa_multiflora	Rmu_sc0004501.1_g000007 Rmu_sc0004594.1_g000018 Rmu_sc0008676.1_g000008 Rmu_sc0008676.1_g000023 Rmu_sc0009248.1_g000009
rosa_roxburghii	Rroxscaffold_1G00007580 Rroxscaffold_1G00008640 Rroxscaffold_1G00008730
rosa_rugosa	Rorug05G0418400 Rorug05G0430400
rosa_samantha	Rh5AG475000 Rh5AG483100 Rh5BG495000 Rh5BG495400 Rh5BG504100 Rh5CG518900 Rh5CG519200 Rh5CG527600 Rh5DG507100 Rh5DG507400 Rh5DG516200
rosa_wichuraiana	Rw5G044100 Rw5G044130 Rw5G044890 Rw5G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	1048
AciI	CCGC	1 cut(s)	190
AclI	AACGTT	4 cut(s)	460, 474, 610, 640
AclWI	GGATC	4 cut(s)	221, 866, 1414, 1427
AcoI	YGGCCR	2 cut(s)	700, 1433
AcsI	RAATTY	2 cut(s)	61, 506
AcuI	CTGAAG	4 cut(s)	198, 737, 1276, 1599
AfaI	GTAC	2 cut(s)	1589, 1670
AgsI	TTSAA	5 cut(s)	75, 310, 888, 1318, 1384
AluBI	AGCT	7 cut(s)	239, 844, 1063, 1090, 1128, 1296, 1362
AluI	AGCT	7 cut(s)	239, 844, 1063, 1090, 1128, 1296, 1362
Alw21I	GWGCWC	1 cut(s)	1092
Alw26I	GTCTC	2 cut(s)	314, 1529
AlwI	GGATC	4 cut(s)	221, 866, 1414, 1427
AoxI	GGCC	2 cut(s)	700, 1433
ApeKI	GCWGC	4 cut(s)	236, 1223, 1226, 1334
ApoI	RAATTY	2 cut(s)	61, 506
AspLEI	GCGC	1 cut(s)	1470
AsuHPI	GGTGA	3 cut(s)	1318, 1384, 1622
AxyI	CCTNAGG	1 cut(s)	621
BalI	TGGCCA	1 cut(s)	1435
BamHI	GGATCC	1 cut(s)	1419
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	1092
BarI	GAAGNNNNNNTAC	4 cut(s)	385, 417, 541, 573
Bbv12I	GWGCWC	1 cut(s)	1092
BbvCI	CCTCAGC	1 cut(s)	1064
BbvI	GCAGC	4 cut(s)	248, 1210, 1213, 1346
BccI	CCATC	4 cut(s)	425, 670, 692, 830
BclI	TGATCA	2 cut(s)	1546, 1627
BcoDI	GTCTC	2 cut(s)	314, 1529
BfaI	CTAG	3 cut(s)	833, 869, 1172
BfmI	CTRYAG	2 cut(s)	6, 1451
BisI	GCNGC	4 cut(s)	237, 1224, 1227, 1335
BlsI	GCNGC	4 cut(s)	238, 1225, 1228, 1336
BmcAI	AGTACT	2 cut(s)	1589, 1670
BmiI	GGNNCC	2 cut(s)	267, 1421
BmsI	GCATC	3 cut(s)	223, 1400, 1455
BpmI	CTGGAG	1 cut(s)	1342
Bpu10I	CCTNAGC	1 cut(s)	1064
BpuEI	CTTGAG	2 cut(s)	1466, 1644
Bse118I	RCCGGY	1 cut(s)	1632
Bse1I	ACTGG	2 cut(s)	1436, 1556
Bse21I	CCTNAGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	382, 591
BseGI	GGATG	6 cut(s)	670, 820, 1186, 1470, 1549, 1630
BseMI	GCAATG	2 cut(s)	382, 591
BseMII	CTCAG	4 cut(s)	309, 954, 1055, 1077
BseNI	ACTGG	2 cut(s)	1436, 1556
BseRI	GAGGAG	3 cut(s)	275, 1081, 1242
BseXI	GCAGC	4 cut(s)	248, 1210, 1213, 1346
BsgI	GTGCAG	2 cut(s)	1080, 1330
BshFI	GGCC	2 cut(s)	702, 1435
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	1092
BsiSI	CCGG	2 cut(s)	703, 1633
BslFI	GGGAC	1 cut(s)	393
BsmAI	GTCTC	2 cut(s)	314, 1529
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	5 cut(s)	316, 448, 867, 982, 1276
BsnI	GGCC	2 cut(s)	702, 1435
Bsp1286I	GDGCHC	1 cut(s)	1092
Bsp143I	GATC	6 cut(s)	226, 871, 1258, 1419, 1546, 1627
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	2 cut(s)	702, 1435
BspCNI	CTCAG	4 cut(s)	310, 955, 1056, 1078
BspLI	GGNNCC	2 cut(s)	267, 1421
BspMAI	CTGCAG	2 cut(s)	10, 1455
BspPI	GGATC	4 cut(s)	221, 866, 1414, 1427
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	382, 591
BsrFI	RCCGGY	1 cut(s)	1632
BsrI	ACTGG	2 cut(s)	1436, 1556
BssAI	RCCGGY	1 cut(s)	1632
BssMI	GATC	6 cut(s)	226, 871, 1258, 1419, 1546, 1627
Bst4CI	ACNGT	4 cut(s)	55, 254, 330, 781
Bst6I	CTCTTC	3 cut(s)	206, 774, 1575
BstC8I	GCNNGC	1 cut(s)	1075
BstDEI	CTNAG	7 cut(s)	318, 417, 621, 963, 1064, 1086, 1507
BstEII	GGTNACC	2 cut(s)	1306, 1372
BstF5I	GGATG	6 cut(s)	670, 820, 1186, 1470, 1549, 1630
BstHHI	GCGC	1 cut(s)	1470
BstKTI	GATC	6 cut(s)	229, 874, 1261, 1422, 1549, 1630
BstMAI	GTCTC	2 cut(s)	314, 1529
BstMBI	GATC	6 cut(s)	226, 871, 1258, 1419, 1546, 1627
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 1280, 1441, 1450
BstPI	GGTNACC	2 cut(s)	1306, 1372
BstSFI	CTRYAG	2 cut(s)	6, 1451
BstV1I	GCAGC	4 cut(s)	248, 1210, 1213, 1346
BstX2I	RGATCY	2 cut(s)	871, 1419
BstYI	RGATCY	2 cut(s)	871, 1419
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	702, 1435
BtsCI	GGATG	6 cut(s)	670, 820, 1186, 1470, 1549, 1630
BtsIMutI	CAGTG	6 cut(s)	713, 960, 1083, 1401, 1443, 1549
Cac8I	GCNNGC	1 cut(s)	1075
CfoI	GCGC	1 cut(s)	1470
Cfr10I	RCCGGY	1 cut(s)	1632
CseI	GACGC	2 cut(s)	1059, 1664
Csp6I	GTAC	2 cut(s)	1588, 1669
CviAII	CATG	3 cut(s)	576, 1389, 1571
CviQI	GTAC	2 cut(s)	1588, 1669
DdeI	CTNAG	7 cut(s)	318, 417, 621, 963, 1064, 1086, 1507
DpnI	GATC	6 cut(s)	228, 873, 1260, 1421, 1548, 1629
DpnII	GATC	6 cut(s)	226, 871, 1258, 1419, 1546, 1627
EaeI	YGGCCR	2 cut(s)	700, 1433
Eam1104I	CTCTTC	3 cut(s)	206, 774, 1575
EarI	CTCTTC	3 cut(s)	206, 774, 1575
Ecl136II	GAGCTC	1 cut(s)	1090
Eco24I	GRGCYC	1 cut(s)	1092
Eco32I	GATATC	1 cut(s)	969
Eco53kI	GAGCTC	1 cut(s)	1090
Eco57I	CTGAAG	4 cut(s)	198, 737, 1276, 1599
Eco81I	CCTNAGG	1 cut(s)	621
Eco91I	GGTNACC	2 cut(s)	1306, 1372
EcoICRI	GAGCTC	1 cut(s)	1090
EcoO65I	GGTNACC	2 cut(s)	1306, 1372
EcoRV	GATATC	1 cut(s)	969
EcoT22I	ATGCAT	1 cut(s)	1276
EcoT38I	GRGCYC	1 cut(s)	1092
FaeI	CATG	3 cut(s)	579, 1392, 1574
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	3 cut(s)	575, 1388, 1570
FauI	CCCGC	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	877
FbaI	TGATCA	2 cut(s)	1546, 1627
FblI	GTMKAC	1 cut(s)	1048
Fnu4HI	GCNGC	4 cut(s)	237, 1224, 1227, 1335
FokI	GGATG	6 cut(s)	677, 827, 1173, 1477, 1556, 1637
FriOI	GRGCYC	1 cut(s)	1092
Fsp4HI	GCNGC	4 cut(s)	237, 1224, 1227, 1335
FspBI	CTAG	3 cut(s)	833, 869, 1172
GlaI	GCGC	1 cut(s)	1469
GluI	GCNGC	4 cut(s)	237, 1224, 1227, 1335
GsuI	CTGGAG	1 cut(s)	1342
HaeIII	GGCC	2 cut(s)	702, 1435
HapII	CCGG	2 cut(s)	703, 1633
HgaI	GACGC	2 cut(s)	1059, 1664
HhaI	GCGC	1 cut(s)	1470
Hin1II	CATG	3 cut(s)	579, 1392, 1574
Hin6I	GCGC	1 cut(s)	1468
HinP1I	GCGC	1 cut(s)	1468
HinfI	GANTC	5 cut(s)	115, 301, 680, 1327, 1393
HpaII	CCGG	2 cut(s)	703, 1633
HphI	GGTGA	3 cut(s)	1318, 1384, 1622
Hpy166II	GTNNAC	3 cut(s)	493, 1049, 1648
Hpy188I	TCNGA	7 cut(s)	120, 319, 430, 586, 601, 814, 826
Hpy188III	TCNNGA	7 cut(s)	230, 450, 899, 1172, 1256, 1265, 1661
Hpy8I	GTNNAC	3 cut(s)	493, 1049, 1648
Hpy99I	CGWCG	3 cut(s)	1303, 1369, 1535
HpyCH4III	ACNGT	4 cut(s)	55, 254, 330, 781
HpyCH4IV	ACGT	5 cut(s)	460, 474, 610, 640, 895
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 1280, 1441, 1450
HpyF3I	CTNAG	7 cut(s)	318, 417, 621, 963, 1064, 1086, 1507
HpySE526I	ACGT	5 cut(s)	460, 474, 610, 640, 895
Hsp92II	CATG	3 cut(s)	579, 1392, 1574
HspAI	GCGC	1 cut(s)	1468
Ksp22I	TGATCA	2 cut(s)	1546, 1627
Kzo9I	GATC	6 cut(s)	226, 871, 1258, 1419, 1546, 1627
LmnI	GCTCC	1 cut(s)	1133
Lsp1109I	GCAGC	4 cut(s)	248, 1210, 1213, 1346
LweI	GCATC	3 cut(s)	223, 1400, 1455
MaeI	CTAG	3 cut(s)	833, 869, 1172
MaeII	ACGT	5 cut(s)	460, 474, 610, 640, 895
MaeIII	GTNAC	3 cut(s)	1306, 1372, 1399
MalI	GATC	6 cut(s)	228, 873, 1260, 1421, 1548, 1629
MboI	GATC	6 cut(s)	226, 871, 1258, 1419, 1546, 1627
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	2 cut(s)	871, 1419
MhlI	GDGCHC	1 cut(s)	1092
MlsI	TGGCCA	1 cut(s)	1435
MluNI	TGGCCA	1 cut(s)	1435
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	2 cut(s)	37, 1021
Mox20I	TGGCCA	1 cut(s)	1435
Mph1103I	ATGCAT	1 cut(s)	1276
MscI	TGGCCA	1 cut(s)	1435
MseI	TTAA	6 cut(s)	20, 33, 510, 660, 929, 1684
MslI	CAYNNNNRTG	1 cut(s)	1463
Msp20I	TGGCCA	1 cut(s)	1435
MspI	CCGG	2 cut(s)	703, 1633
MunI	CAATTG	1 cut(s)	305
Mva1269I	GAATGC	5 cut(s)	316, 448, 867, 982, 1276
MwoI	GCNNNNNNNGC	4 cut(s)	245, 1280, 1441, 1450
NdeI	CATATG	1 cut(s)	877
NdeII	GATC	6 cut(s)	226, 871, 1258, 1419, 1546, 1627
NlaIII	CATG	3 cut(s)	579, 1392, 1574
NlaIV	GGNNCC	2 cut(s)	267, 1421
NmuCI	GTSAC	3 cut(s)	1306, 1372, 1399
NsiI	ATGCAT	1 cut(s)	1276
PctI	GAATGC	5 cut(s)	316, 448, 867, 982, 1276
PfeI	GAWTC	4 cut(s)	301, 680, 1327, 1393
PkrI	GCNGC	4 cut(s)	238, 1225, 1228, 1336
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	1092
Psp1406I	AACGTT	4 cut(s)	460, 474, 610, 640
PspEI	GGTNACC	2 cut(s)	1306, 1372
PspN4I	GGNNCC	2 cut(s)	267, 1421
PstI	CTGCAG	2 cut(s)	10, 1455
PsuI	RGATCY	2 cut(s)	871, 1419
RsaI	GTAC	2 cut(s)	1589, 1670
RsaNI	GTAC	2 cut(s)	1588, 1669
RseI	CAYNNNNRTG	1 cut(s)	1463
SacI	GAGCTC	1 cut(s)	1092
SaqAI	TTAA	6 cut(s)	20, 33, 510, 660, 929, 1684
SatI	GCNGC	4 cut(s)	237, 1224, 1227, 1335
Sau3AI	GATC	6 cut(s)	226, 871, 1258, 1419, 1546, 1627
ScaI	AGTACT	2 cut(s)	1589, 1670
SchI	GAGTC	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	1092
SfaNI	GCATC	3 cut(s)	223, 1400, 1455
SfcI	CTRYAG	2 cut(s)	6, 1451
SmiMI	CAYNNNNRTG	1 cut(s)	1463
SmlI	CTYRAG	2 cut(s)	1481, 1659
SmoI	CTYRAG	2 cut(s)	1481, 1659
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	3 cut(s)	833, 869, 1172
SstI	GAGCTC	1 cut(s)	1092
TaaI	ACNGT	4 cut(s)	55, 254, 330, 781
TaiI	ACGT	5 cut(s)	463, 477, 613, 643, 898
TaqI	TCGA	1 cut(s)	1026
TatI	WGTACW	2 cut(s)	1587, 1668
TfiI	GAWTC	4 cut(s)	301, 680, 1327, 1393
Tru1I	TTAA	6 cut(s)	20, 33, 510, 660, 929, 1684
Tru9I	TTAA	6 cut(s)	20, 33, 510, 660, 929, 1684
TscAI	CASTG	6 cut(s)	720, 967, 1090, 1408, 1443, 1556
TseFI	GTSAC	3 cut(s)	1306, 1372, 1399
TseI	GCWGC	4 cut(s)	236, 1223, 1226, 1334
Tsp45I	GTSAC	3 cut(s)	1306, 1372, 1399
TspGWI	ACGGA	3 cut(s)	199, 996, 1477
TspRI	CASTG	6 cut(s)	720, 967, 1090, 1408, 1443, 1556
XapI	RAATTY	2 cut(s)	61, 506
XbaI	TCTAGA	1 cut(s)	1171
XcmI	CCANNNNNNNNNTGG	2 cut(s)	237, 1366
XmiI	GTMKAC	1 cut(s)	1048
XspI	CTAG	3 cut(s)	833, 869, 1172
ZrmI	AGTACT	2 cut(s)	1589, 1670
Zsp2I	ATGCAT	1 cut(s)	1276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.